-
1
-
-
0037021409
-
Protein names and how to find them
-
10.1016/S1386-5056(02)00052-7, 12460631
-
Franzen K, Eriksson G, Olsson F, Asker L, Liden P, Coster J. Protein names and how to find them. International Journal of Medical Informatics 2002, 67(1-3):49-61. 10.1016/S1386-5056(02)00052-7, 12460631.
-
(2002)
International Journal of Medical Informatics
, vol.67
, Issue.1-3
, pp. 49-61
-
-
Franzen, K.1
Eriksson, G.2
Olsson, F.3
Asker, L.4
Liden, P.5
Coster, J.6
-
2
-
-
33947359082
-
BioCreAtIvE Task 1A: gene mention finding evaluation
-
10.1186/1471-2105-6-S1-S2, 1869012, 15960832
-
Yeh A, Morgan A, Colosimo M, Hirschman L. BioCreAtIvE Task 1A: gene mention finding evaluation. BMC Bioinformatics 2005, 6(Suppl 1):S2. 10.1186/1471-2105-6-S1-S2, 1869012, 15960832.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Yeh, A.1
Morgan, A.2
Colosimo, M.3
Hirschman, L.4
-
3
-
-
31144432293
-
Literature mining for the biologist: from information retrieval to biological discovery
-
10.1038/nrg1768, 16418747
-
Jensen LJ, Saric J, Bork P. Literature mining for the biologist: from information retrieval to biological discovery. Nature Reviews Genetics 2006, 7(2):119-129. 10.1038/nrg1768, 16418747.
-
(2006)
Nature Reviews Genetics
, vol.7
, Issue.2
, pp. 119-129
-
-
Jensen, L.J.1
Saric, J.2
Bork, P.3
-
5
-
-
8444226720
-
Term identification in the biomedical literature
-
10.1016/j.jbi.2004.08.004, 15542023
-
Krauthammer M, Nenadic G. Term identification in the biomedical literature. J Biomed Inform 2004, 37(6):512-526. 10.1016/j.jbi.2004.08.004, 15542023.
-
(2004)
J Biomed Inform
, vol.37
, Issue.6
, pp. 512-526
-
-
Krauthammer, M.1
Nenadic, G.2
-
6
-
-
0002353623
-
Detecting Gene Symbols and Names in Biological Texts: A First Step toward Pertinent Information Extraction
-
11072323
-
Proux D, Rechenmann F, Julliard L, Pillet V, Jacq B. Detecting Gene Symbols and Names in Biological Texts: A First Step toward Pertinent Information Extraction. Genome Inform Ser Workshop Genome Inform 1998, 9:72-80. 11072323.
-
(1998)
Genome Inform Ser Workshop Genome Inform
, vol.9
, pp. 72-80
-
-
Proux, D.1
Rechenmann, F.2
Julliard, L.3
Pillet, V.4
Jacq, B.5
-
7
-
-
8444234745
-
Mining Biomedical Abstracts: What is in a Term?
-
Nenadic G, Spasic I, Ananiadou S. Mining Biomedical Abstracts: What is in a Term?. Proceedings of International Joint Conference on NLP, Sanya, China 2004, 247-254.
-
(2004)
Proceedings of International Joint Conference on NLP, Sanya, China
, pp. 247-254
-
-
Nenadic, G.1
Spasic, I.2
Ananiadou, S.3
-
8
-
-
17244380380
-
A survey of current work in biomedical text mining
-
10.1093/bib/6.1.57, 15826357
-
Cohen AM, Hersh WR. A survey of current work in biomedical text mining. Briefings in Bioinformatics 2005, 6:57-71. 10.1093/bib/6.1.57, 15826357.
-
(2005)
Briefings in Bioinformatics
, vol.6
, pp. 57-71
-
-
Cohen, A.M.1
Hersh, W.R.2
-
10
-
-
1042269470
-
GAPSCORE: finding gene and protein names one word at a time
-
10.1093/bioinformatics/btg393, 14734313
-
Chang JT, Schütze H, Altman RB. GAPSCORE: finding gene and protein names one word at a time. Bioinformatics 2004, 20(2):216-225. 10.1093/bioinformatics/btg393, 14734313.
-
(2004)
Bioinformatics
, vol.20
, Issue.2
, pp. 216-225
-
-
Chang, J.T.1
Schütze, H.2
Altman, R.B.3
-
11
-
-
25144520247
-
ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text
-
10.1093/bioinformatics/bti475, 15860559
-
Settles B. ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text. Bioinformatics 2005, 21(14):3191-3192. 10.1093/bioinformatics/bti475, 15860559.
-
(2005)
Bioinformatics
, vol.21
, Issue.14
, pp. 3191-3192
-
-
Settles, B.1
-
12
-
-
0035224502
-
Disambiguating proteins, genes, and RNA in text: a machine learning approach
-
Hatzivassiloglou V, Duboue PA, Rzhetsky A. Disambiguating proteins, genes, and RNA in text: a machine learning approach. Bioinformatics 2001, 17(Suppl 1):S97-106.
-
(2001)
Bioinformatics
, vol.17
, Issue.SUPPL. 1
-
-
Hatzivassiloglou, V.1
Duboue, P.A.2
Rzhetsky, A.3
-
13
-
-
8444241489
-
Enhancing performance of protein and gene name recognizers with filtering and integration strategies
-
10.1016/j.jbi.2004.08.006, 15542018
-
Hou WJ, Chen HH. Enhancing performance of protein and gene name recognizers with filtering and integration strategies. J Biomed Inform 2004, 37(6):448-460. 10.1016/j.jbi.2004.08.006, 15542018.
-
(2004)
J Biomed Inform
, vol.37
, Issue.6
, pp. 448-460
-
-
Hou, W.J.1
Chen, H.H.2
-
14
-
-
0037433048
-
Identification of key concepts in biomedical literature using a modified Markov heuristic
-
10.1093/bioinformatics/btg010, 12584127
-
Majoros WH, Subramanian GM, Yandell MD. Identification of key concepts in biomedical literature using a modified Markov heuristic. Bioinformatics 2003, 19(3):402-407. 10.1093/bioinformatics/btg010, 12584127.
-
(2003)
Bioinformatics
, vol.19
, Issue.3
, pp. 402-407
-
-
Majoros, W.H.1
Subramanian, G.M.2
Yandell, M.D.3
-
15
-
-
33947317767
-
Exploring the Boundaries: Gene and Protein Identification in Biomedical Text
-
10.1186/1471-2105-6-S1-S5, 1869019, 15960839
-
Finkel J, Dingare S, Manning C, Nissim M, Alex B. Exploring the Boundaries: Gene and Protein Identification in Biomedical Text. BMC Bioinformatics 2005, 6:S5. 10.1186/1471-2105-6-S1-S5, 1869019, 15960839.
-
(2005)
BMC Bioinformatics
, vol.6
-
-
Finkel, J.1
Dingare, S.2
Manning, C.3
Nissim, M.4
Alex, B.5
-
16
-
-
46249123634
-
Integrating high dimensional bi-directional parsing models for gene mention tagging
-
10.1093/bioinformatics/btn183, 2718659, 18586726
-
Hsu CN, Chang YM, Kuo CJ, Lin YS, Huang HS, Chung IF. Integrating high dimensional bi-directional parsing models for gene mention tagging. Bioinformatics 2008, 24(13):i286-i294. 10.1093/bioinformatics/btn183, 2718659, 18586726.
-
(2008)
Bioinformatics
, vol.24
, Issue.13
-
-
Hsu, C.N.1
Chang, Y.M.2
Kuo, C.J.3
Lin, Y.S.4
Huang, H.S.5
Chung, I.F.6
-
17
-
-
13244269875
-
Tools for loading MEDLINE into a local relational database
-
10.1186/1471-2105-5-146, 524480, 15471541
-
Hearst MA, Altman RB, Schwartz AS, Bhalotia G, Oliver DE. Tools for loading MEDLINE into a local relational database. BMC Bioinformatics 2004, 5:146+. 10.1186/1471-2105-5-146, 524480, 15471541.
-
(2004)
BMC Bioinformatics
, vol.5
-
-
Hearst, M.A.1
Altman, R.B.2
Schwartz, A.S.3
Bhalotia, G.4
Oliver, D.E.5
-
19
-
-
0035042776
-
A literature network of human genes for high-throughput analysis of gene expression
-
10.1038/88213, 11326270
-
Jenssen TK, Laegreid A, Komorowski J, Hovig E. A literature network of human genes for high-throughput analysis of gene expression. Nat Genet 2001, 28:21-28. 10.1038/88213, 11326270.
-
(2001)
Nat Genet
, vol.28
, pp. 21-28
-
-
Jenssen, T.K.1
Laegreid, A.2
Komorowski, J.3
Hovig, E.4
-
20
-
-
51049088875
-
Overview of the protein-protein interaction annotation extraction task of BioCreative II
-
2559988, 18834495, 10.1186/gb-2008-9-s2-s4
-
Krallinger M, Leitner F, Penagos CR, Valencia A. Overview of the protein-protein interaction annotation extraction task of BioCreative II. Genome Biol 2008, 9(Suppl 2):S4. 2559988, 18834495, 10.1186/gb-2008-9-s2-s4.
-
(2008)
Genome Biol
, vol.9
, Issue.SUPPL. 2
-
-
Krallinger, M.1
Leitner, F.2
Penagos, C.R.3
Valencia, A.4
-
21
-
-
44649134672
-
Identification of transcription factor contexts in literature using machine learning approaches
-
10.1186/1471-2105-9-S3-S11, 18426546, 2352869
-
Yang H, Nenadic G, Keane JA. Identification of transcription factor contexts in literature using machine learning approaches. BMC Bioinformatics 2008, 9(Suppl 3):S11. 10.1186/1471-2105-9-S3-S11, 18426546, 2352869.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.SUPPL. 3
-
-
Yang, H.1
Nenadic, G.2
Keane, J.A.3
-
22
-
-
33947307025
-
Recognition of protein/gene names from text using an ensemble of classifiers
-
10.1186/1471-2105-6-S1-S7, 1869021, 15960841
-
Zhou G, Shen D, Zhang J, Su J, Tan S. Recognition of protein/gene names from text using an ensemble of classifiers. BMC Bioinformatics 2005, 6(Suppl 1):S7. 10.1186/1471-2105-6-S1-S7, 1869021, 15960841.
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.SUPPL. 1
-
-
Zhou, G.1
Shen, D.2
Zhang, J.3
Su, J.4
Tan, S.5
-
23
-
-
0036830301
-
Creating an online dictionary of abbreviations from MEDLINE
-
10.1197/jamia.M1139, 349378, 12386112
-
Chang JT, Schütze H, Altman RB. Creating an online dictionary of abbreviations from MEDLINE. J Am Med Inform Assoc 2002, 9(6):612-620. 10.1197/jamia.M1139, 349378, 12386112.
-
(2002)
J Am Med Inform Assoc
, vol.9
, Issue.6
, pp. 612-620
-
-
Chang, J.T.1
Schütze, H.2
Altman, R.B.3
-
24
-
-
9444280764
-
Using machine learning to extract drug and gene relationships from text
-
[Adviser-Russ Altman]
-
Chang JT. Using machine learning to extract drug and gene relationships from text. PhD thesis, Stanford, CA, USA 2004, [Adviser-Russ Altman].
-
(2004)
PhD thesis, Stanford, CA, USA
-
-
Chang, J.T.1
-
25
-
-
0036579940
-
Mapping Abbreviations to Full Forms in Biomedical Articles
-
10.1197/jamia.M0913, 344586, 11971887
-
Yu H, Hripcsak G, Friedman C. Mapping Abbreviations to Full Forms in Biomedical Articles. J Am Med Inform Assoc 2002, 9(3):262-272. 10.1197/jamia.M0913, 344586, 11971887.
-
(2002)
J Am Med Inform Assoc
, vol.9
, Issue.3
, pp. 262-272
-
-
Yu, H.1
Hripcsak, G.2
Friedman, C.3
-
27
-
-
1542505235
-
SaRAD: a Simple and Robust Abbreviation Dictionary
-
10.1093/bioinformatics/btg439, 14990448
-
Adar E. SaRAD: a Simple and Robust Abbreviation Dictionary. Bioinformatics 2004, 20(7):527-533. 10.1093/bioinformatics/btg439, 14990448.
-
(2004)
Bioinformatics
, vol.20
, Issue.7
, pp. 527-533
-
-
Adar, E.1
-
28
-
-
55249111767
-
Abbreviation Definition Identification Based On Automatic Precision Estimates
-
10.1186/1471-2105-9-402, 2576267, 18817555
-
Sohn S, Comeau DC, Kim W, Wilbur JW. Abbreviation Definition Identification Based On Automatic Precision Estimates. BMC Bioinformatics 2008, 9:402+. 10.1186/1471-2105-9-402, 2576267, 18817555.
-
(2008)
BMC Bioinformatics
, vol.9
-
-
Sohn, S.1
Comeau, D.C.2
Kim, W.3
Wilbur, J.W.4
-
30
-
-
63849165516
-
Automatic extraction of acronym-meaning pairs from MEDLINE databases
-
Pustejovsky J, Castaño J, Cochran B, Kotecki M, Morrell M. Automatic extraction of acronym-meaning pairs from MEDLINE databases. Medinfo 2001, 10(Pt 1):371-375., http://view.ncbi.nlm.nih.gov/pubmed/11604766
-
(2001)
Medinfo
, vol.10
, Issue.PART 1
, pp. 371-375
-
-
Pustejovsky, J.1
Castaño, J.2
Cochran, B.3
Kotecki, M.4
Morrell, M.5
-
31
-
-
38449110656
-
A comparison study on algorithms of detecting long forms for short forms in biomedical text
-
10.1186/1471-2105-8-S9-S5, 2217663, 18047706
-
Torii M, Hu ZZ, Song M, Wu CH, Liu H. A comparison study on algorithms of detecting long forms for short forms in biomedical text. BMC Bioinformatics 2007, 8(Suppl 9):S5. 10.1186/1471-2105-8-S9-S5, 2217663, 18047706.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 9
-
-
Torii, M.1
Hu, Z.Z.2
Song, M.3
Wu, C.H.4
Liu, H.5
-
32
-
-
41349103793
-
Overview of BioCreative II gene normalization
-
10.1186/gb-2008-9-s2-s3, 18834494, 2559987
-
Morgan A, Lu Z, Wang X, Cohen A, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, Sun C, Liu HH, Torres R, Krauthammer M, Lau W, Liu H, Hsu CN, Schuemie M, Cohen BK, Hirschman L. Overview of BioCreative II gene normalization. Genome Biol 2008, 9(Suppl 2):S3. 10.1186/gb-2008-9-s2-s3, 18834494, 2559987.
-
(2008)
Genome Biol
, vol.9
, Issue.SUPPL. 2
-
-
Morgan, A.1
Lu, Z.2
Wang, X.3
Cohen, A.4
Fluck, J.5
Ruch, P.6
Divoli, A.7
Fundel, K.8
Leaman, R.9
Hakenberg, J.10
Sun, C.11
Liu, H.H.12
Torres, R.13
Krauthammer, M.14
Lau, W.15
Liu, H.16
Hsu, C.N.17
Schuemie, M.18
Cohen, B.K.19
Hirschman, L.20
more..
-
34
-
-
35748966977
-
Learning string similarity measures for gene/protein name dictionary look-up using logistic regression
-
10.1093/bioinformatics/btm393, 17698493
-
Tsuruoka Y, McNaught J, Tsujii J, Ananiadou S. Learning string similarity measures for gene/protein name dictionary look-up using logistic regression. Bioinformatics 2007, 23(20):2768-2774. 10.1093/bioinformatics/btm393, 17698493.
-
(2007)
Bioinformatics
, vol.23
, Issue.20
, pp. 2768-2774
-
-
Tsuruoka, Y.1
McNaught, J.2
Tsujii, J.3
Ananiadou, S.4
-
36
-
-
1542370010
-
MALLET: A Machine Learning for Language Toolkit
-
Mccallum AK. MALLET: A Machine Learning for Language Toolkit. 2002,
-
(2002)
-
-
Mccallum, A.K.1
-
38
-
-
0038745227
-
Extraction and Disambiguation of Acronym-Meaning Pairs in Medline
-
Pustejovsky J, Castao J, Cochran B, Kotecki M, Morrell M, Rumshisky A. Extraction and Disambiguation of Acronym-Meaning Pairs in Medline. 2001, , http://citeseer.ist.psu.edu/article/pustejovsky01extraction.html
-
(2001)
-
-
Pustejovsky, J.1
Castao, J.2
Cochran, B.3
Kotecki, M.4
Morrell, M.5
Rumshisky, A.6
|