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Volumn , Issue , 2009, Pages 501-506

Compute pairwise Manhattan distance and Pearson correlation coefficient of data points with GPU

Author keywords

Hierarchical clustering; Parallel and distributed computation; Similarity and dissimilarity metrics

Indexed keywords

CENTRAL PROCESSING UNITS; COMPUTATIONAL DEVICES; DATA ANALYSIS; DATA POINTS; DISTRIBUTED COMPUTATIONS; DNA MICROARRAY TECHNOLOGY; FUNDAMENTAL OPERATIONS; GENERAL-PURPOSE COMPUTING; GPU PROGRAMMING; GRAPHICS PROCESSING UNITS; HIER-ARCHICAL CLUSTERING; HIGH THROUGHPUT; IF THERE ARE; IN-CELL; MANHATTAN DISTANCE; PAIRWISE DISTANCES; PEARSON CORRELATION COEFFICIENTS; REAL TIME GRAPHICS; SPEED-UPS;

EID: 71249093935     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/SNPD.2009.34     Document Type: Conference Paper
Times cited : (61)

References (13)
  • 2
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    • (1999) Nat Genet , vol.21 , pp. 33-37
    • Brown, P.1    Botstein, D.2
  • 8
    • 43349092363 scopus 로고    scopus 로고
    • CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
    • Manavski SA, Valle G. CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment. BMC Bioinformatics 2008, 9(Suppl 2):S10.
    • (2008) BMC Bioinformatics , vol.9 , Issue.SUPPL. 2
    • Manavski, S.A.1    Valle, G.2
  • 9
    • 70350247232 scopus 로고    scopus 로고
    • June 7
    • Nvidia Corporation, NVIDIA CUDA Programming Guide, Version 2.0 June 7, 2008. http://developer.download.nvidia.com/compute/cuda/2.0-Beta2/docs/ Programming Guide 2.0beta2.pdf
    • (2008) NVIDIA CUDA Programming Guide, Version 2.0
  • 10
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush J. Microarray data normalization and transformation. Nat Genet 2002, 32 Suppl:496-501.
    • (2002) Nat Genet , vol.32 , Issue.SUPPL. , pp. 496-501
    • Quackenbush, J.1
  • 13
    • 32844470387 scopus 로고    scopus 로고
    • Hierarchical clustering of gene expression profiles with graphics hardware acceleration
    • Zhang Q, Zhang Y. Hierarchical clustering of gene expression profiles with graphics hardware acceleration. Pattern Recognition Letters 2006, 27:676-81.
    • (2006) Pattern Recognition Letters , vol.27 , pp. 676-681
    • Zhang, Q.1    Zhang, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.