-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
3
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
4
-
-
0000555927
-
Sorbitol versus sucrose as photosynthesis and translocation products in developing apricot leaves
-
Bieleski RL, Redgwell RJ (1985) Sorbitol versus sucrose as photosynthesis and translocation products in developing apricot leaves. Aust J Plant Physiol 12: 657-668.
-
(1985)
Aust J Plant Physiol
, vol.12
, pp. 657-668
-
-
Bieleski, R.L.1
Redgwell, R.J.2
-
6
-
-
0000485714
-
A possible role of hydroxyproline-containing proteins in the cessation of cell elongation
-
Cleland R, Karlsnes AM (1967) A possible role of hydroxyproline-containing proteins in the cessation of cell elongation. Plant Physiol 42: 669-671.
-
(1967)
Plant Physiol
, vol.42
, pp. 669-671
-
-
Cleland, R.1
Karlsnes, A.M.2
-
7
-
-
70449559872
-
Qvalue: Q-value estimation for false discovery rate control
-
Dabney A, Storey JD and Warnes GR (2008) qvalue: Q-value estimation for false discovery rate control. R package version 1. 16. 0. http://bioconductor. org/packages/2. 4/bioc/html/qvalue. html.
-
(2008)
R package version 1. 16. 0.
-
-
Dabney, A.1
Storey, J.D.2
Warnes, G.R.3
-
8
-
-
0036141267
-
The importance of apple rootstocks on tree growth, yield, fruit quality, leaf nutrition, and photosynthesis with an emphasis on 'Fuji
-
Fallahi E, Colt WM, Fallahi B, Chun IJ (2002) The importance of apple rootstocks on tree growth, yield, fruit quality, leaf nutrition, and photosynthesis with an emphasis on 'Fuji'. Hort Technology 12: 38-44.
-
(2002)
Hort Technology
, vol.12
, pp. 38-44
-
-
Fallahi, E.1
Colt, W.M.2
Fallahi, B.3
Chun, I.J.4
-
9
-
-
18944378997
-
RNA extraction from different apple tissues rich in polyphenols and polysaccharides for cDNA library construction
-
Gasic K, Hernandez A, Korban SS (2004) RNA extraction from different apple tissues rich in polyphenols and polysaccharides for cDNA library construction. Plant Mol Biol Rep 22: 437-438.
-
(2004)
Plant Mol Biol Rep
, vol.22
, pp. 437-438
-
-
Gasic, K.1
Hernandez, A.2
Korban, S.S.3
-
10
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge YC, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang JH (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: 16.
-
(2004)
Genome Biol
, vol.5
, pp. 16
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautier, L.8
Ge, Y.C.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.H.24
Zhang, J.H.25
more..
-
11
-
-
34247098814
-
A BAC-based physical map of the apple genome
-
Han Y, Gasic K, Marron B, Beever JE, Korban SS (2007) A BAC-based physical map of the apple genome. Genomics 89: 630-637.
-
(2007)
Genomics
, vol.89
, pp. 630-637
-
-
Han, Y.1
Gasic, K.2
Marron, B.3
Beever, J.E.4
Korban, S.S.5
-
12
-
-
0029103636
-
Effect of rootstock and cultivar on the growth and precocity of young apple trees
-
Hirst PM, Ferree DC (1995) Effect of rootstock and cultivar on the growth and precocity of young apple trees. Fruit Var J 49: 34-41.
-
(1995)
Fruit Var J
, vol.49
, pp. 34-41
-
-
Hirst, P.M.1
Ferree, D.C.2
-
13
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hoobs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostat 4: 249-264.
-
(2003)
Biostat
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hoobs, B.2
Collin, F.3
Beazer-barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
14
-
-
1542790520
-
Rootstock effects on gene expression patterns in apple tree scions
-
Jensen PJ, Rytter J, Detwiler EA, Travis JW, McNellis TW (2003) Rootstock effects on gene expression patterns in apple tree scions. Plant Mol Biol 53: 493-511.
-
(2003)
Plant Mol Biol
, vol.53
, pp. 493-511
-
-
Jensen, P.J.1
Rytter, J.2
Detwiler, E.A.3
Travis, J.W.4
McNellis, T.W.5
-
15
-
-
0030868380
-
Polar transport of [H-3]-IAA in apical shoot segments of different apple rootstocks
-
Kamboj JS, Browning G, Quinlan JD, Blake PS, Baker DA (1997) Polar transport of [H-3]-IAA in apical shoot segments of different apple rootstocks. J Hortic Sci 72: 773-780.
-
(1997)
J Hortic Sci.
, vol.72
, pp. 773-780
-
-
Kamboj, J.S.1
Browning, G.2
Quinlan, J.D.3
Blake, P.S.4
Baker, D.A.5
-
16
-
-
0032859243
-
Identification and quantitation by GC-MS of zeatin and zeatin riboside in xylem sap from rootstock and scion of grafted apple trees
-
Kamboj JS, Blake PS, Quinlan JD, Baker DA (1999) Identification and quantitation by GC-MS of zeatin and zeatin riboside in xylem sap from rootstock and scion of grafted apple trees. Plant Growth Regul 28: 199-205.
-
(1999)
Plant Growth Regul
, vol.28
, pp. 199-205
-
-
Kamboj, J.S.1
Blake, P.S.2
Quinlan, J.D.3
Baker, D.A.4
-
17
-
-
4444335600
-
Coordinated genetic regulation of growth and lignin revealed by quantitative trait locus analysis of cDNA microarray data in an interspecific backcross of eucalyptus
-
Kirst M, Myburg AA, De Leon JPG, Kirst ME, Scott J, Sederoff R (2004) Coordinated genetic regulation of growth and lignin revealed by quantitative trait locus analysis of cDNA microarray data in an interspecific backcross of eucalyptus. Plant Physiol 135: 2368-2378.
-
(2004)
Plant Physiol
, vol.135
, pp. 2368-2378
-
-
Kirst, M.1
Myburg, A.A.2
de Leon, J.P.G.3
Kirst, M.E.4
Scott, J.5
Sederoff, R.6
-
18
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(-Delta Delta C) method
-
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(-Delta Delta C) method. Methods 25: 402-408.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
19
-
-
0000168368
-
Physiology and metabolism of sugar alcohols in higher plants
-
Loescher WH (1987) Physiology and metabolism of sugar alcohols in higher plants. Physiol Plant 70: 553-557.
-
(1987)
Physiol Plant
, vol.70
, pp. 553-557
-
-
Loescher, W.H.1
-
20
-
-
0035059330
-
Silk road apples-collection, evaluation, and utilization of Malus sieversii from Central Asia
-
Luby J, Forsline P, Aldwinckle H, Bus V, Geibel M (2001) Silk road apples-collection, evaluation, and utilization of Malus sieversii from Central Asia. HortScience 36: 225-231.
-
(2001)
HortScience
, vol.36
, pp. 225-231
-
-
Luby, J.1
Forsline, P.2
Aldwinckle, H.3
Bus, V.4
Geibel, M.5
-
21
-
-
71049175674
-
A booke of the arte and manner how to plant and graffe all sorts of trees: How to sette stones and sovv pipins, to make wild trees to graffe on, as also remedies and medicines: With divers other new practises
-
Wight, London
-
Mascall L (1569) A booke of the arte and manner how to plant and graffe all sorts of trees: how to sette stones and sovv pipins, to make wild trees to graffe on, as also remedies and medicines: with divers other new practises. H. Bynnemann for J. Wight, London.
-
(1569)
H. Bynnemann for J.
-
-
Mascall, L.1
-
22
-
-
0036069831
-
Indole-3-acetic acid level in wood, bark and cambial sap of apple rootstocks differing in growth vigour
-
Michalczuk L (2002) Indole-3-acetic acid level in wood, bark and cambial sap of apple rootstocks differing in growth vigour. Acta Physiol Plant 24: 131-136.
-
(2002)
Acta Physiol Plant
, vol.24
, pp. 131-136
-
-
Michalczuk, L.1
-
23
-
-
33845624887
-
Microarray validation: Factors influencing correlation between oligonucleotide microarrays and real-time PCR
-
Morey JS, Ryan JC, van Dolah FM (2006) Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR. Biol Proced Online 8: 175-193.
-
(2006)
Biol Proced Online
, vol.8
, pp. 175-193
-
-
Morey, J.S.1
Ryan, J.C.2
van Dolah, F.M.3
-
24
-
-
0003111888
-
Detection and characterization of sorbitol dehydrogenase from apple callus tissue
-
Negm FB, Loescher WH (1979) Detection and characterization of sorbitol dehydrogenase from apple callus tissue. Plant Physiol 64: 69-73.
-
(1979)
Plant Physiol
, vol.64
, pp. 69-73
-
-
Negm, F.B.1
Loescher, W.H.2
-
25
-
-
33745433580
-
Analyses of expressed sequence tags from apple
-
Newcomb RD, Crowhurst RN, Gleave AP, Rikkerink EHA, Allan AC, Beuning LL, Bowen JH, Gera E, Jamieson KR, Janssen BJ, Laing WA, McArtney S, Nain B, Ross GS, Snowden KC, Souleyre EJF, Walton EF, Yauk YK (2006) Analyses of expressed sequence tags from apple. Plant Physiol 141: 147-166.
-
(2006)
Plant Physiol
, vol.141
, pp. 147-166
-
-
Newcomb, R.D.1
Crowhurst, R.N.2
Gleave, A.P.3
Rikkerink, E.H.A.4
Allan, A.C.5
Beuning, L.L.6
Bowen, J.H.7
Gera, E.8
Jamieson, K.R.9
Janssen, B.J.10
Laing, W.A.11
McArtney, S.12
Nain, B.13
Ross, G.S.14
Snowden, K.C.15
Souleyre, E.J.F.16
Walton, E.F.17
Yauk, Y.K.18
-
26
-
-
3142668945
-
Sorbitol dehydrogenase expression and activity during apple fruit set and early development
-
Nosarszewski M, Clements AM, Downie AB, Archbold DD (2004) Sorbitol dehydrogenase expression and activity during apple fruit set and early development. Physiol Plant 121: 391-398.
-
(2004)
Physiol Plant
, vol.121
, pp. 391-398
-
-
Nosarszewski, M.1
Clements, A.M.2
Downie, A.B.3
Archbold, D.D.4
-
27
-
-
0036115190
-
Molecular cloning and characterization of four cDNAs encoding the isoforms of NAD-dependent sorbitol dehydrogenase from the Fuji apple
-
Park SW, Song KJ, Kim MY, Hwang JH, Shin YU, Kim WC, Chung WI (2002) Molecular cloning and characterization of four cDNAs encoding the isoforms of NAD-dependent sorbitol dehydrogenase from the Fuji apple. Plant Sci 162: 513-519.
-
(2002)
Plant Sci.
, vol.162
, pp. 513-519
-
-
Park, S.W.1
Song, K.J.2
Kim, M.Y.3
Hwang, J.H.4
Shin, Y.U.5
Kim, W.C.6
Chung, W.I.7
-
28
-
-
0037460985
-
TIGR Gene Indices clustering tools (TGICL): A software system for fast clustering of large EST datasets
-
Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, Tsai J, Quackenbush J (2003) TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19: 651-652.
-
(2003)
Bioinformatics
, vol.19
, pp. 651-652
-
-
Pertea, G.1
Huang, X.2
Liang, F.3
Antonescu, V.4
Sultana, R.5
Karamycheva, S.6
Lee, Y.7
White, J.8
Cheung, F.9
Parvizi, B.10
Tsai, J.11
Quackenbush, J.12
-
29
-
-
34548202675
-
Relative developmental, environmental, and tree-to-tree variability in buds from field-grown apple trees
-
Pichler FB, Walton EF, Davy M, Triggs C, Janssen B, Wunsche JN, Putterill J, Schaffer RJ (2007) Relative developmental, environmental, and tree-to-tree variability in buds from field-grown apple trees. Tree Genet Genomes 3: 329-339.
-
(2007)
Tree Genet Genomes
, vol.3
, pp. 329-339
-
-
Pichler, F.B.1
Walton, E.F.2
Davy, M.3
Triggs, C.4
Janssen, B.5
Wunsche, J.N.6
Putterill, J.7
Schaffer, R.J.8
-
30
-
-
33748491517
-
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
Shi LM, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, Collins PJ, de Longueville F, Kawasaki ES, Lee KY, Luo YL, Sun YMA, Willey JC, Setterquist RA, Fischer GM et al (2006) The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nat Biotechnol 24: 1151-1161.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1151-1161
-
-
Shi, L.M.1
Reid, L.H.2
Jones, W.D.3
Shippy, R.4
Warrington, J.A.5
Baker, S.C.6
Collins, P.J.7
de Longueville, F.8
Kawasaki, E.S.9
Lee, K.Y.10
Luo, Y.L.11
Sun, Y.M.A.12
Willey, J.C.13
Setterquist, R.A.14
Fischer, G.M.15
-
31
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Smyth, GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article 3.
-
(2004)
Stat Appl Genet Mol Biol 3: Article 3
-
-
Smyth, G.K.1
-
32
-
-
33644872577
-
LIMMA: Linear models for microarray data
-
R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, and W. Huber (Eds.), New York: Springer
-
Smyth GK (2005) LIMMA: linear models for microarray data. In: Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W (eds) Bioinformatics and computational biology solutions using R and bioconductor. Springer, New York, pp 397-420.
-
(2005)
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
33
-
-
0028051161
-
Auxin transport capacity in relation to the dwarfing effect of apple rootstocks
-
Soumelidou K, Morris DA, Battey NH, Barnett JR, John P (1994a) Auxin transport capacity in relation to the dwarfing effect of apple rootstocks. J Hortic Sci 69: 719-725.
-
(1994)
J Hortic Sci
, vol.69
, pp. 719-725
-
-
Soumelidou, K.1
Morris, D.A.2
Battey, N.H.3
Barnett, J.R.4
John, P.5
-
34
-
-
0028321071
-
The anatomy of the developing bud union and its relationship to dwarfing in apple
-
Soumelidou K, Battey NH, John P, Barnett JR (1994b) The anatomy of the developing bud union and its relationship to dwarfing in apple. Ann Bot 74: 605-611.
-
(1994)
Ann Bot
, vol.74
, pp. 605-611
-
-
Soumelidou, K.1
Battey, N.H.2
John, P.3
Barnett, J.R.4
-
35
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100: 9440-9445.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
36
-
-
0033214409
-
The sucrose-cleaving enzymes of plants are crucial for development, growth and carbon partitioning
-
Sturm A, Tang GQ (1999) The sucrose-cleaving enzymes of plants are crucial for development, growth and carbon partitioning. Trends Plant Sci 4: 401-407.
-
(1999)
Trends Plant Sci.
, vol.4
, pp. 401-407
-
-
Sturm, A.1
Tang, G.Q.2
-
37
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van't Veer LJ, Dai HY, van de Vijver MJ, He YDD, Hart AAM, Mao M, Peterse HL, van der Kooy K, Marton MJ, Witteveen AT, Schreiber GJ, Kerkhoven RM, Roberts C, Linsley PS, Bernards R, Friend SH (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature 415: 530-536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
van't Veer, L.J.1
Dai, H.Y.2
van de Vijver, M.J.3
He, Y.D.D.4
Hart, A.A.M.5
Mao, M.6
Peterse, H.L.7
van der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
Schreiber, G.J.11
Kerkhoven, R.M.12
Roberts, C.13
Linsley, P.S.14
Bernards, R.15
Friend, S.H.16
-
38
-
-
0027435006
-
The amino-acid sequence of Ole eI, the major allergen from olive tree (Olea europaea) pollen
-
Villalba M, Batanero E, Lopezotin C, Sanchez LM, Monsalve RI, Delapena MAG, Lahoz C, Rodriguez R (1993) The amino-acid sequence of Ole eI, the major allergen from olive tree (Olea europaea) pollen. Eur J Biochem 216: 863-869.
-
(1993)
Eur J Biochem
, vol.216
, pp. 863-869
-
-
Villalba, M.1
Batanero, E.2
Lopezotin, C.3
Sanchez, L.M.4
Monsalve, R.I.5
Delapena, M.A.G.6
Lahoz, C.7
Rodriguez, R.8
-
39
-
-
33846614286
-
Apple rootstocks
-
D. C. Ferree and I. J. Warrington (Eds.), Cambridge: CABI Publishing
-
Webster AD, Wertheim SJ (2003) Apple rootstocks. In: Ferree DC, Warrington IJ (eds) Apples botany, production and uses. CABI Publishing, Cambridge, pp 91-124.
-
(2003)
Apples Botany, Production and Uses
, pp. 91-124
-
-
Webster, A.D.1
Werthein, S.J.2
-
40
-
-
0142099141
-
-
Fruit Research Station, Wilhelminadorp, The Netherlands
-
Wertheim SJ (1998) Rootstock guide: apple, pear, cherry, European plum. Fruit Research Station, Wilhelminadorp, The Netherlands.
-
(1998)
Rootstock Guide: Apple, Pear, Cherry, European Plum
-
-
Wertheim, S.J.1
|