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RNA structure ana lysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE)
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Introduces the SHAPE method
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Merino EJ, Wilkinson KA, Coughlan JL, Weeks KM: RNA structure ana lysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J. Am. Chem. Soc. 127, 4223-4231 (2005). □ Introduces the SHAPE method.
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A comparative method for finding and folding RNA secondary structures within protein-coding regions
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Description of the RNA-decoder method used to predict evolutionarily conserved secondary-structure elements
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Pedersen JS, Meyer IM, Forsberg R, Simmonds P, Hein J: A comparative method for finding and folding RNA secondary structures within protein-coding regions. Nucleic Acids Res. 32, 4925-4936 (2004). □ Description of the RNA-decoder method used to predict evolutionarily conserved secondary-structure elements.
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68449092202
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Architecture and secondary structure of an entire HIV-1 RNA genome
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Premature termination and processing of human immunodeficiency virus type 1-promoted transcripts
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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
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The previous SHAPE HIV-1 structure showing the first 973 nucleotide
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Wilkinson KA, Gorelick RJ, Vasa SM et al.: High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. PLoS Biol. 6(4), e96 (2008). □ The previous SHAPE HIV-1 structure showing the first 973 nucleotide.
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In Vitro evidence for a long range pseudoknot in the 5′- untranslated and matrix coding regions of HIV-1 genomic RNA
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Paillart J, Skripkin E, Ehresman B, Ehresman C, Marquet R: In vitro evidence for a long range pseudoknot in the 5′-untranslated and matrix coding regions of HIV-1 genomic RNA. J. Biol. Chem. 277(8), 5995-6004 (2002). (Pubitemid 34968382)
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