Development and characterization of SSR markers and their use to assess genetic relationships smong alfalfa germplasms

Crop Science

Volumn 49, Issue 6, 2009, Pages 2176-2186

  He, C ^a,b   Xia, Z L ^a   Campbell, T A ^a   Bauchan, G R ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b DOW AGROSCIENCES LLC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EUKARYOTA; MEDICAGO SATIVA; MOAPA;

EID: 70749083883     PISSN: 0011183X     EISSN: None     Source Type: Journal    
DOI: 10.2135/cropsci2007.04.0456     Document Type: Article

References (58)

1. Akkaya, M.S., A.A. Bhagwat, and P.B. Cregan. 1992. Length polymorphism of simple sequence repeat DNA in soybean. Genetics 132:1131-1139.
2. Barcaccia, G., E. Albertini, S. Tavoletti, M. Falcinelli, and F. Veronesi. 1999. AFLP fingerprinting in Medicago spp.: Its development and application in linkage mapping. Plant Breed. 118:335-340.
3. Barnes, D.K., E.T. Bingham, R.P. Murphy, O.J. Hunt, D.F. Beard, W.H. Skrdla, and L.R. Teuber. 1977. Alfalfa germplasm in the United States: Genetic vulnerability, use, improvement, and maintenance. USDA Tech. Bull. 1571. U.S. Government Printing Office, Washington, DC.
4. Barnes, D.K., B.P. Goplen, and J.E. Baylor. 1988. Highlights in the USA and Canada. p. 1-24. In A.A. Hanson et al. (ed.) Alfalfa and alfalfa improvement. Agron. Monogr. 29. ASA, CSSA, SSSA, Madison, WI.
5. Bauchan, G.R., T.A. Campbell, and M.A. Hossain. 2003. Comparative chromosome banding studies of non dormant alfalfa germplasm. Crop Sci. 43:2037-2042.
6. Bingham, E.T. 1993. Registration of Wisfal germplasm line. Crop Sci. 33:217.
7. Brouwer, D.J., and T.C. Osborn. 1999. A molecular marker linkage map of tetraploid alfalfa (Medicago sativa L.). Theor. Appl. Genet. 99:1194-1200.
8. Brummer, E.C., J.H. Bouton, and G. Kochert. 1993. Development of an RFLP map in diploid alfalfa. Theor. Appl. Genet. 86:329-332.
9. Brummer, E.C., J.H. Bouton, and G. Kochert. 1995. Analysis of annual Medicago species using RAPD markers. Genome 38:362-367.
10. Campbell, T.A. 2000. Molecular analysis of genetic variation among alfalfa (Medicago sativa L.) and Medicago ruthenica clones. Can. J. Plant Sci. 80:773-779.
11. Choi, H.-K., D. Kim, T. Uhm, E. Limpens, H. Lim, J.-H. Mun, P. Kalo, R.V. Penmetsa, A. Seres, O. Kulikova, B.A. Roe, T. Bissling, G.B. Kiss, and D.R. Cook. 2004a. A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa. Genetics 166:1463-1502.
12. Choi, H.-K., J.-H. Mun, D.-J. Kim, H. Zhu, J.-M. Baek, J. Mudge, B. Roe, N. Ellis, J. Doyle, G.B. Kiss, N.D. Young, and D.R. Cook. 2004b. Estimated genome conservation between crop and model legume species. Proc. Natl. Acad. Sci. USA 101:15289-15294.
13. Cregan, P.B., T. Jarvik, A.L. Bush, R.C. Shoemaker, K.G. Lark, A.L. Kahler, N. Kaya, T.T. VanToai, D.G. Lohnes, J. Chung, and J.E. Specht. 1999. An integrated genetic map of the soybean genome. Crop Sci. 39:1464-1490.
14. Davierwala, A.P., W. Ramakrishna, P.K. Rajeka, and V.S. Gupta. 2000. Sequence variation at a complex microsatellite locus in rice and its conservation in cereals. Theor. Appl. Genet. 101:1291-1298.
15. Diwan, N., A.A. Bhagwat, G.B. Bauchan, and P.B. Cregan. 1997. Simple sequence repeat DNA markers in alfalfa and perennial and annual Medicago species. Genome 40:887-895.
16. Diwan, N., J.H. Bouton, G. Kochert, and P.B. Cregan. 2000. Mapping of simple sequence repeat (SSR) DNA markers in diploid and tetraploid alfalfa. Theor. Appl. Genet. 101:165-172.
17. Doyle, T.T., and J.L. Doyle. 1989. Isolation of plant DNA from fresh tissue. Focus 12:13-15.
18. Echt, C.S., K.K. Kidwell, S.J. Knapp, T.C. Osborn, and T.J. McCoy. 1993. Linkage mapping in diploid alfalfa (Medicago sativa). Genome 37:61-71.
19. Elgin, J.H., Jr. 1982. Registration of W10 alfalfa germplasm. Crop Sci. 22:163.
20. Eujayl, I., M.K. Sledge, L. Wang, G.D. May, K. Chekhovskiy, J.C. Zwonitzer, and M.A.R. Mian. 2004. Medicago truncatula ESTSSRs reveal cross-species genetic markers for Medicago spp. Theor. Appl. Genet. 108:414-422.
21. Eujayl, I., M. Sorrells, M. Baum, P. Wolters, and W. Powell. 2001. Assessment of genotypic variation among cultivated durum wheat based on EST-SSRs and genomic SSRs. Euphytica 119:39-43.
22. Gaitán-Solís, E., M.C. Duque, K.J. Edwards, and J. Tohme. 2002. Microsatellite repeats in common bean (Phaseolus vulgaris): Isolation, characterization, and cross-species amplification in Phaseolus spp. Crop Sci. 42:2128-2136.
23. Gur-Arie, R., C.J. Cohen, Y. Eitan, L. Shelef, E.M. Hallerman, and Y. Kashi. 2000. Simple sequence repeats in Escherichia coli: Abundance, distribution, composition and poly-morphism. Genome Res. 10:62-71.
24. He, C., V. Poysa, and K. Yu. 2003. Development and characterization of simple sequence repeat (SSR) markers and their use in determining relationships among Lycopersicon esculentum cultivars. Theor. Appl. Genet. 106:363-373.
25. Hospital, F., and A. Charcosset. 1997. Marker-assisted introgression of quantitative trait loci. Genetics 147:1469-1485.
26. Ivanov, A.I. 1977. History, origin and evolution of the genus Medicago, subgenus Falcago. Bull. Appl. Bot. Genet. Select. 59:3-40.
27. Julier, B., S. Flajoulot, P. Barre, G. Cardinet, S. Santoni, T. Huguet, and C. Huyghe. 2003. Construction of two genetic linkage maps in cultivated tetraploid alfalfa (M. sativa) using microsatellite and AFLP markers. BMC Plant Biol. 3:9.
28. Kaló, P., G. Endre, L. Zimányi, and G. Csanádi. 2000. Construction of an improved linkage map of diploid alfalfa (Medicago sativa). Theor. Appl. Genet. 100:641-657.
29. Kidwell, K.K., D.F. Austin, and T.C. Osborn. 1994. RFLP evaluation of nine Medicago accessions representing the original germplasm sources for North American alfalfa cultivars. Crop Sci. 34:230-236.
30. Li, W.-H. 1997. Molecular evolution. Sinauer Associates, Sunderland, MA.
31. Luo, Z.W., R. Thompson, and J.A. Woolliams. 1997. A population genetics model of marker-assisted selection. Genetics 146:1173-1183.
32. Kiss, G.B., G. Csanádi, K. Kálmán, P. Kaló, and L. Ökrész. 1993. Construction of a basic genetic map for alfalfa using RFLP, RAPD, isozyme and morphological markers. Mol. Gen. Genet. 238:129-137.
33. Melton, B., C. Currier, and J. Kimmell. 1990. Registration of alfalfa germplasm representing eight diversity groups and a very fall dormant population. Crop Sci. 30:753-754.
34. Mengoni, A., A. Gori, and M. Bazzicalupo. 2000. Use of RAPD and microsatellite (SSR) variation to assess genetic relationships among populations of tetraploid alfalfa, Medicago sativa. Plant Breed. 119:311-317.
35. Michaud, R., W.F. Lehman, and M.D. Rumbaugh. 1988. World distribution and historical development. p. 25-91. In A.A. Hanson et al. (ed.) Alfalfa and alfalfa improvement. Agron. Monogr. 29. ASA, CSSA, SSSA, Madison, WI.
36. Nei, M., and W.H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76:5269-5273.
37. Nunome, T., K. Suwabe, H. Iketani, and M. Hirai. 2003a. Identification and characterization of microsatellites in eggplant. Plant Breed. 122:256-262.
38. Nunome, T., K. Suwabe, A. Ohyama, and H. Fukuoka. 2003b. Characterization of trinucleotide microsatellites in eggplant. Breed. Sci. 53:77-83.
39. Obert, D.E., D.Z. Skinner, and D.L. Stuteville. 2000. Association of AFLP markers with downy mildew resistance in autotetraploid alfalfa. Mol. Breed. 6:287-294.
40. Powell, W., M. Morgante, C. Andre, M. Hanafey, J. Vogel, S. Tingey, and A. Rafalski. 1996. The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germ-plasm analysis. Mol. Breed. 2:225-238.
41. Pupilli, F., P. Labombarda, C. Scotti, and S. Arcioni. 2000. RFLP analysis allows for the identification of alfalfa ecotypes. Plant Breed. 119:271-276.
42. Robins, J.G., D. Luth, T.A. Campbell, G.R. Bauchan, C. He, D. Viands, J.L. Hansen, and E.C. Brummer. 2007a. Genetic mapping of biomass production in tetraploid alfalfa, (Medicago sativa L.). Crop Sci. 47:1-10.
43. Robins, J.G., G.R. Bauchan, and E.C. Brummer. 2007b. Genetic mapping of forage yield, plant height, and regrowth at multiple harvests in tetraploid alfalfa (Medicago sativa L.). Crop Sci. 47:11-18.
44. Saal, B., and G. Wricke. 1999. Development of simple sequence repeats in rye (Secale cereale L.). Genome 42:964-972.
45. Saha, S., M. Karaca, J.N. Jenkins, A.E. Zipf, O.U.K. Reddy, and R.V. Kantety. 2003. Simple sequence repeats as useful resources to study transcribed genes of cotton. Euphytica. 130:355-364.
46. Sambrook, J., E.F. Fritsch, and T. Maniatis. 1989. Molecular cloning: A laboratory manual. 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY. SAS Institute. 2000. SAS/STAT guide for personal computers, Version 8.0. SAS Inst., Cary, NC.
47. Segovia-Lerma, A., R.G. Cantrell, J.M. Conway, and I.M. Ray. 2003. AFLP-based assessment of genetic diversity among nine alfalfa germplasms using bulk DNA templates. Genome 46:51-58.
48. Shete, S., H. Tiwari, and R.C. Elston. 2000. On estimating the heterozygosity and polymorphism information content value. Theor. Popul. Biol. 57:265-271.
49. Sledge, M.K., I.M. Ray, and G. Jiang. 2005. An expressed sequence tag SSR map of tetraploid alfalfa (Medicago sativa L.). Theor. Appl. Genet. 111:980-992.
50. Smith, S.E., A. Al-Doss, and M. Warburton. 1991. Morphological and agronomic variation in North African and Arabian alfalfas. Crop Sci. 31:1159-1163.
51. Smulders, M.J.M., G. Bredemeijer, W. Rus-Kortekaas, P. Arens, and B. Vosman. 1997. Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species. Theor. Appl. Genet. 97:264-272.
52. Song, Q.J., E.W. Fickus, and P.B. Cregan. 2002. Characterization of trinucleotide SSR motifs in wheat. Theor. Appl. Genet. 104:286-293.
53. Taggard, K.L., L.R. Teuber, and L.K. Gibbs. 2000. Notice of release of alfalfa germplasm selected under field conditions for fall growth. Agronomy Progress Report, University of California, Davis. 268:1-3.
54. Tavoletti, S., F. Veronesi, and T.C. Osborn. 1996. RFLP linkage map of an alfalfa meiotic mutant based on an F1 population. J. Hered. 87:167-170.
55. Yan, L., A. Loukoianov, G. Tranquilli, M. Helguera, T. Fahima, and J. Dubcovsky. 2003. Positional cloning of the wheat vernalization gene VRN1. Proc. Natl. Acad. Sci. USA 100:6263-6268.
56. Yu, K., and K.P. Pauls. 1993. Identification of a RAPD marker associated with somatic embryogenesis in alfalfa. Plant Mol. Biol. 22:269-277.
57. Zhang, X.Y., C.W. Li, L.F. Wang, H.M. Wang, G.X. You, and Y.S. Dong. 2002. An estimation of the minimum number of SSR alleles needed to reveal genetic relationships in wheat varieties. I. Information from large-scale planted varieties and cornerstone breeding parents in Chinese wheat improvement and production. Theor. Appl. Genet. 106:112-117.
58. Zhu, H., H.-K. Choi, D.R. Cook, and R.C. Shoemaker. 2005. Bridging model and crop legumes through comparative genomics. Plant Physiol. 137:1189-1196.