Validation of a single nucleotide polymorphism (SNP) typing assay with 49 SNPs for forensic genetic testing in a laboratory accredited according to the ISO 17025 standard

Forensic Science International: Genetics

Volumn 4, Issue 1, 2009, Pages 34-42

  Børsting, Claus ^a   Rockenbauer, Eszter ^a   Morling, Niels ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

Accreditation; Forensic genetics; ISO 17025 standard; Multiplex; Single nucleotide polymorphism

Indexed keywords

ACCREDITATION; ALLELE; ARTICLE; CAPILLARY ELECTROPHORESIS; CHILD; DNA DETERMINATION; FEMALE; FORENSIC GENETICS; GENOTYPE; HETEROZYGOTE; HOMOZYGOTE; HUMAN; MALE; NUCLEIC ACID ANALYSIS; POLYMERASE CHAIN REACTION; POLYMORPHIC LOCUS; PRIORITY JOURNAL; SHORT TANDEM REPEAT; SIGNAL NOISE RATIO; SINGLE BASE EXTENSION; SINGLE NUCLEOTIDE POLYMORPHISM;

ACCREDITATION; ALLELES; DNA FINGERPRINTING; HUMANS; LABORATORIES; LIKELIHOOD FUNCTIONS; MALE; PATERNITY; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; TANDEM REPEAT SEQUENCES;

EID: 70649114756     PISSN: 18724973     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fsigen.2009.04.004     Document Type: Article

References (26)

1. Reeder D.J. Impact of DNA typing on standards and practice in the forensic community. Arch. Pathol. Lab. Med. 123 (1999) 1063-1065
2. Schneider P.M. Scientific standards for studies in forensic genetics. Forensic Sci. Int. 165 (2007) 238-243
3. Morling N., Allen R.W., Carrecedo A., Geada H., Guidet F., Hallenberg C., Martin W., Mayr W.R., Olaisen B., Pascali V.L., and Schneider P.M. Paternity testing commission of the International Society of Forensic Genetics: recommendation on genetic investigation in paternity cases. Forensic Sci. Int. 129 (2002) 148-157
4. ENFSI standing committee for quality and competence, Standards for accreditation, www.enfsi.org/documents/policy documents/QCC-ACC-001.pdf.
5. Malkoc E., and Neuteboom W. The current status of forensic science laboratory accreditation in Europe. Forensic Sci. Int. 167 (2007) 121-126
6. Saks M.J., and Koehler J.J. The coming paradigm shift in forensic identification science. Science 309 (2005) 892-895
7. Opar A. Crime and punishment. Nature Med. 12 (2006) 1110-1112
8. Whittall H. The forensic use of DNA: scientific success story, ethical minefield. Biotechnol. J. 3 (2008) 303-305
9. Krawczak M. Informativity assessment for biallelic single nucleotide polymorphisms. Electrophoresis 20 (1999) 1676-1681
10. Gill P. An assessment of the utility of single nucleotide polymorphisms (SNPs) for forensic purposes. Int. J. Legal Med. 114 (2001) 204-210
11. Ayres K.L. The expected performance of single nucleotide polymorphism loci in paternity testing. Forensic Sci. Int. 154 (2005) 167-172
12. Inagaki S., Yamamoto Y., Doi Y., Takata T., Ishikawa T., Imabayashi K., Yoshitome K., Miyaishi S., and Ishizu H. A new 39-plex analysis method for SNPs including 15 blood group loci. Forensic Sci. Int. 144 (2004) 45-57
13. Petkovski E., Keyser-Tracqui C., Hienne R., and Ludes B. SNPs and MALDI-TOF MS: tools for DNA typing in forensic paternity testing and anthropology. J. Forensic. Sci. 50 (2005) 1-7
14. Lee H.Y., Park M.J., Yoo J., Chung U., Han G., and Shin K. Selection of twenty-four highly informative SNP markers for human identification and paternity analysis in Koreans. Forensic Sci. Int. 148 (2005) 107-112
15. Dixon L.A., Murray C.M., Archer E.J., Dobbins A.E., Koumi P., and Gill P. Validation of a 21-locus autosomal SNP multiplex for forensic identification purposes. Forensic Sci. Int. 154 (2005) 62-77
16. Sanchez J.J., Phillips C., Børsting C., Balogh K., Bogus M., Fondevila M., Harrison C.D., Musgrave-Brown E., Salas A., Syndercombe-Court D., Schneider P.M., Carracedo A., and Morling N. A multiplex assay with 52 single nucleotide polymorphisms for human identification. Electrophoresis 27 (2006) 1713-1724
17. Li L., Li C., Li R., Liu Y., Lin Y., Que T., Sun M., and Li Y. SNP genotyping by multiplex amplification and microarrays assay for forensic identification. Forensic Sci. Int. 162 (2006) 74-79
18. Pakstis A.J., Speed W.C., Kidd J.R., and Kidd K.K. Candidate SNPs for a universal individual identification panel. Hum. Genet. 121 (2007) 305-317
19. Børsting C., Sanchez J.J., Hansen H.E., Hansen A.J., Bruun H.Q., and Morling N. Performance of the SNPforID 52 SNP-plex assay in paternity testing. Forensic Sci. Int. Genet. 2 (2008) 292-300
20. Musgrave-Brown E., Ballard D., Balogh K., Bender K., Berger B., Bogus M., Børsting C., Brion M., Fondevila M., Harrison C., Oguzturun C., Parson W., Phillips C., Proff C., Ramos-Luis E., Sanchez J.J., Diz P.S., Rey B., Stradmann-Bellinghausen B., Thacker C., Carracedo A., Morling N., Scheithauer R., Schneider P.M., and Court D.S. Forensic validation of the SNPforID 52-plex assay. Forensic Sci. Int. Genet. 1 (2007) 186-190
21. Sanchez J.J., Børsting C., Balogh K., Berger B., Bogus M., Butler J., Carracedo A., Syndercombe Court D., Dixon L.A., Filipović B., Fondevila M., Gill P., Harrison C.D., Hohoff C., Huel R., Ludes B., Parson W., Parsons T.J., Phillips C., Schmitter H., Schneider P.M., Vallone P.M., and Morling N. Forensic typing of autosomal SNPs with a 29 SNP-multiplex-results of a collaborative EDNAP exercise. Forensic Sci. Int. Genet. 2 (2008) 176-183
22. A.J. Hansen, B.T. Simonsen, C. Børsting, C. Hallenberg, N. Morling, Semi-automatic preparation of biological database samples for STR and SNP typing, Prog. For. Genet. 11, International Congress Series 1288 (2006) 663-665.
23. Hu G. DNA polymerase-catalyzed addition of nontemplated extra nucleotides to the 3' end of a DNA fragment. DNA Cell Biol. 12 (1993) 763-770
24. Magnuson V.L., Ally D.S., Nylund S.J., Karanjawala Z.E., Rayman J.B., Knapp J.I., Lowe A.L., Ghosh S., and Collins F.S. Substrate nucleotide-determined non-templated addition of adenine by Taq DNA polymerase: implications for PCR-based genotyping and cloning. Biotechniques 21 (1996) 700-709
25. Kong A., Gudbjartsson D.F., Sainz J., Jonsdottir G.M., Gudjonsson S.A., Richardsson B., Sigurdardottir S., Barnard J., Hallbeck B., Masson G., Shlien A., Palsson S.T., Frigge M.L., Thorgeirsson T.E., Gulcher J.R., and Stefansson K. A high-resolution recombination map of the human genome. Nat. Genet. 31 (2002) 241-247
26. Sun F., Oliver-Bonet M., Liehr T., Starke H., Ko E., Rademaker A., Navarro J., Benet J., and Martin R.H. Human male recombination maps for individual chromosomes. Am. J. Hum. Genet. 74 (2004) 521-531