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Volumn 128, Issue 6, 2009, Pages 551-558

Association mapping of straighthead disorder induced by arsenic in Oryza sativa

Author keywords

Genetic diversity; Linkage disequilibrium; Oryza; Population structure; Principal component; Straighthead disorder; Unified mixedmodel

Indexed keywords

ORYZA; ORYZA SATIVA;

EID: 70649097461     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2009.01631.x     Document Type: Article
Times cited : (26)

References (47)
  • 1
    • 41149156547 scopus 로고    scopus 로고
    • Molecular diversity and genome-wide linkage disequilibrium patterns in a worldwide collection of Oryza sativa and its wild relatives
    • Agrama, H. A., and G. C Eizenga, 2008: Molecular diversity and genome-wide linkage disequilibrium patterns in a worldwide collection of Oryza sativa and its wild relatives. Euphytica 160, 339-355.
    • (2008) Euphytica , vol.160 , pp. 339-355
    • Agrama, H.A.1    Eizenga, G.C.2
  • 2
    • 33947323124 scopus 로고    scopus 로고
    • Association mapping of yield and its components in rice cultivars
    • Agrama, H. A., G. C Eizenga, and W. Yan, 2007: Association mapping of yield and its components in rice cultivars. Mol. Breed. 19, 341-356.
    • (2007) Mol. Breed. , vol.19 , pp. 341-356
    • Agrama, H.A.1    Eizenga, G.C.2    Yan, W.3
  • 6
    • 33644781694 scopus 로고    scopus 로고
    • Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars
    • Breseghello, F., and M. E. Sorrells, 2006a: Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172, 1165-1177.
    • (2006) Genetics , vol.172 , pp. 1165-1177
    • Breseghello, F.1    Sorrells, M.E.2
  • 7
    • 33646455729 scopus 로고    scopus 로고
    • Association analysis as a strategy for improvement of quantitative traits in plants
    • Breseghello, F., and M. E. Sorrells, 2006b: Association analysis as a strategy for improvement of quantitative traits in plants. Crop Sci. 46, 1323-1330.
    • (2006) Crop Sci. , vol.46 , pp. 1323-1330
    • Breseghello, F.1    Sorrells, M.E.2
  • 9
    • 34547110840 scopus 로고    scopus 로고
    • A Markov Chain Monte Carlo approach for joint inference of population structure and inbreeding rates from multilocus genotype data
    • Gao, H., S. Williamson, and C D. Bustamante, 2007: A Markov Chain Monte Carlo approach for joint inference of population structure and inbreeding rates from multilocus genotype data. Genetics 176, 1635-1651.
    • (2007) Genetics , vol.176 , pp. 1635-1651
    • Gao, H.1    Williamson, S.2    Bustamante, C.D.3
  • 10
    • 0242286593 scopus 로고    scopus 로고
    • Population structure and its effect on haplotype diversity and linkage disequilibrium, surrounding the xa5 locus of rice (Oryza sativa L.)
    • Garris, A. J., S. R. McCouch, and S. Kresovich, 2003: Population structure and its effect on haplotype diversity and linkage disequilibrium, surrounding the xa5 locus of rice (Oryza sativa L.). Genetics 165, 759-769.
    • (2003) Genetics , vol.165 , pp. 759-769
    • Garris, A.J.1    McCouch, S.R.2    Kresovich, S.3
  • 12
    • 0036899010 scopus 로고    scopus 로고
    • SPAGeDi: A versatile computer program to analyse spatial genetic structure at the individual or population levels
    • Hardy, O., and X. Vekemans, 2002: SPAGeDi: A versatile computer program to analyse spatial genetic structure at the individual or population levels. Mol. Ecol. Notes 2, 618-620.
    • (2002) Mol. Ecol. Notes , vol.2 , pp. 618-620
    • Hardy, O.1    Vekemans, X.2
  • 13
    • 0000781653 scopus 로고
    • Arsenic content of soil and crops following use of methanearsenate herbicides
    • Johnson, L. R., and A. E. Hiltbold, 1969: Arsenic content of soil and crops following use of methanearsenate herbicides. Soil. Sci. Soc. Am. Proc. 33, 279-282.
    • (1969) Soil. Sci. Soc. Am. Proc. , vol.33 , pp. 279-282
    • Johnson, L.R.1    Hiltbold, A.E.2
  • 15
    • 5144221069 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars
    • Kraakman, A. T. W., E. Niks, P. M. van den Berg, P. Stam. and F. A. van Eeuwijk, 2004: Linkage disequilibrium mapping of yield and yield stability in modern spring barley cultivars. Genetics 168, 435-446.
    • (2004) Genetics , vol.168 , pp. 435-446
    • Kraakman, A.T.W.1    Niks, E.2    Van Den Berg, P.M.3    Stam, P.4    Van Eeuwijk, F.A.5
  • 16
    • 33644519375 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping of morphological, resistance, and other agronomically relevant traits in modern spring barley cultivars
    • Kraakman, A. T. W., F. Martinez, B. Mussiraliev, F. A. van Eeuwijk, and R. E. Niks, 2006: Linkage disequilibrium mapping of morphological, resistance, and other agronomically relevant traits in modern spring barley cultivars. Mol. Breed. 17, 41-58.
    • (2006) Mol. Breed. , vol.17 , pp. 41-58
    • Kraakman, A.T.W.1    Martinez, F.2    Mussiraliev, B.3    Van Eeuwijk, F.A.4    Niks, R.E.5
  • 17
    • 0028090414 scopus 로고
    • Genetic dissection of complex traits
    • Lander, E., and N. Schork, 1994: Genetic dissection of complex traits. Science 265, 2037-2048.
    • (1994) Science , vol.265 , pp. 2037-2048
    • Lander, E.1    Schork, N.2
  • 18
    • 34249834088 scopus 로고
    • The influence of chemical form, and concentration of arsenic on rice growth and tissue arsenic concentration
    • Martin, A. R., P. H. Masscheleyn, and. W. H. Jr. Patrick, 1992: The influence of chemical form, and concentration of arsenic on rice growth and tissue arsenic concentration. Plant Soil. 139, 175-183.
    • (1992) Plant Soil. , vol.139 , pp. 175-183
    • Martin, A.R.1    Masscheleyn, P.H.2    Patrick Jr., W.H.3
  • 21
    • 3042714186 scopus 로고    scopus 로고
    • Long range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep
    • Palaisa, K., M. Morgante, S. Tingey, and A. Rafalski, 2004: Long range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. Proc. Natl Acad. Sci. USA 101, 9885-9890.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 9885-9890
    • Palaisa, K.1    Morgante, M.2    Tingey, S.3    Rafalski, A.4
  • 22
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and Eigenanalysis
    • doi:10.1371/journal.pgen.0020190.
    • Patterson, N., A, L. Price, and D. Reich, 2006: Population structure and Eigenanalysis. PLoS Genet. 2, el90. doi:10.1371/journal.pgen.0020190.
    • (2006) PLoS Genet. , vol.2
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 23
    • 33644871292 scopus 로고    scopus 로고
    • GENALEX 6: Genetic analysis in Excel Population genetic software for teaching and research
    • Peakall, R., and P. E. Smouse, 2006: GENALEX 6: genetic analysis in Excel Population genetic software for teaching and research. Mol. Ecol. Notes 6, 288-295.
    • (2006) Mol. Ecol. Notes , vol.6 , pp. 288-295
    • Peakall, R.1    Smouse, P.E.2
  • 24
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price, A. L., N. J. Patterson, R. M. Plenge, M. E. Weinblatt, N. A. Shadick, and D. Reich, 2006: Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38, 904-909.
    • (2006) Nat. Genet. , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5    Reich, D.6
  • 27
    • 42649088044 scopus 로고    scopus 로고
    • Principal component analysis of genetic data
    • Reich, D., A, L. Price, and N. Patterson, 2008: Principal component analysis of genetic data. Nat. Genet. 40, 491-492.
    • (2008) Nat. Genet. , vol.40 , pp. 491-492
    • Reich, D.1    Price, A.L.2    Patterson, N.3
  • 29
    • 0029872999 scopus 로고    scopus 로고
    • Estimators for pairwise relatedness and inbreeding coefficients
    • Ritland, K., 1996: Estimators for pairwise relatedness and inbreeding coefficients. Genet. Res. 67, 175-186.
    • (1996) Genet. Res. , vol.67 , pp. 175-186
    • Ritland, K.1
  • 31
    • 33750437374 scopus 로고    scopus 로고
    • Clines, clusters, and the effect of study design on the inference of human population structure
    • Rosenberg, N. A., S. Mahajan, S. Ramachandran, C. Zhao, J. K. Pritchard, and M. W. Feldman, 2005: Clines, clusters, and the effect of study design on the inference of human population structure. PLoS Genet. 1, 660-671.
    • (2005) PLoS Genet. , vol.1 , pp. 660-671
    • Rosenberg, N.A.1    Mahajan, S.2    Ramachandran, S.3    Zhao, C.4    Pritchard, J.K.5    Feldman, M.W.6
  • 32
    • 0003526297 scopus 로고    scopus 로고
    • SAS Institute, version. 9.1., SAS Inst., Cary, NC
    • SAS Institute, 2006: SAS system for Windows, version. 9.1., SAS Inst., Cary, NC
    • (2006) SAS System for Windows
  • 33
    • 0035235185 scopus 로고    scopus 로고
    • Genome partitioning and whole-genome analysis
    • Schork, N. J., 2001: Genome partitioning and whole-genome analysis. Adv. Genet. 42, 299-322.
    • (2001) Adv. Genet. , vol.42 , pp. 299-322
    • Schork, N.J.1
  • 35
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genome-wide studies
    • Storey, J. D., and R. Tibshirani, 2003: Statistical significance for genome-wide studies. Proc. Nat. Acad. Sci. USA 100, 9440-9445.
    • (2003) Proc. Nat. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 36
    • 33745385623 scopus 로고    scopus 로고
    • Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red preicarp in rice
    • Sweeny, M. T., M. J. Thomson, B. E. Pfeil, and S. McCouch, 2006: Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red preicarp in rice. Plant Cell 18, 283-294.
    • (2006) Plant Cell , vol.18 , pp. 283-294
    • Sweeny, M.T.1    Thomson, M.J.2    Pfeil, B.E.3    McCouch, S.4
  • 37
    • 0035979181 scopus 로고    scopus 로고
    • Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)
    • Tenaillon, M. L, 2001: Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl Acad. Sci. USA 98, 9161-91.66.
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 9161-9166
    • Tenaillon, M.L.1
  • 39
    • 39749115611 scopus 로고    scopus 로고
    • Bridging genomics and genetic diversity: Linkage disequilibrium structure and association mapping in maize and other cereals
    • Veyrieras, J. B., L. Camus-Kulandaivelu, B. Gouesnard, D. Mianicacci, and A. Charcosset, 2007: Bridging genomics and genetic diversity: Linkage disequilibrium structure and association mapping in maize and other cereals. Crop Sci. 47, S60-S71.
    • (2007) Crop Sci. , vol.47
    • Veyrieras, J.B.1    Camus-Kulandaivelu, L.2    Gouesnard, B.3    Mianicacci, D.4    Charcosset, A.5
  • 40
    • 0008805440 scopus 로고
    • Sterility in rice cultivars as influenced by MSMA rate and water management
    • Wells, B. R., and J. T. Gilmour, 1977: Sterility in rice cultivars as influenced by MSMA rate and water management. Agron. J. 69, 451-454.
    • (1977) Agron. J. , vol.69 , pp. 451-454
    • Wells, B.R.1    Gilmour, J.T.2
  • 41
    • 22844434889 scopus 로고    scopus 로고
    • Differential response of rice germplasm to straighthead induced by arsenic
    • DOI 10.2135/cropsci2004.0348
    • Yan, W., R. H. Dilday, T. H. Tai, J. W. Gibbons, R. W. McNew, and J. N. Rutger, 2005a: Differential response of rice germplasm to Straighthead induced by Arsenic. Crop Sci. 45, 1223-1228. (Pubitemid 41040577)
    • (2005) Crop Science , vol.45 , Issue.4 , pp. 1223-1228
    • Yan, W.1    Dilday, R.H.2    Tai, T.H.3    Gibbons, J.W.4    McNew, R.W.5    Rutger, J.N.6
  • 44
    • 56849091317 scopus 로고    scopus 로고
    • Soil and plant minerals associated with rice straighthead disorder induced by Arsenic
    • Yan, W., H. A. Agrama, N. Slaton, and J. Gibbons, 2008: Soil and plant minerals associated with rice straighthead disorder induced by Arsenic. Agron. J. 100, 1655-1661.
    • (2008) Agron. J. , vol.100 , pp. 1655-1661
    • Yan, W.1    Agrama, H.A.2    Slaton, N.3    Gibbons, J.4
  • 45
    • 30344442002 scopus 로고    scopus 로고
    • Power and type 1 error rate of fales discovery rate approaches in genome-wide association studies
    • DOI 10.1186/1471-2156-6-S1-S134
    • Yang, Q., J. Cui, I. Chazaro, L. A. Cupples, and S. Demissie, 2005: Power and type I error rate of false discovery rate approaches in genome-wide association studies. BMC Genet. 6, S134. (Pubitemid 46437545)
    • (2005) BMC Genetics , vol.6 , Issue.SUPPL. 1
    • Yang, Q.1    Cui, J.2    Chazaro, I.3    Cupples, L.A.4    Demissie, S.5


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