Investigation of regulatory factors required for alternative oxidase production in Neurospora crassa

Physiologia Plantarum

Volumn 137, Issue 4, 2009, Pages 407-418

  Chae, Michael S ^a,b   Nargang, Frank E ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b SAITAMA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALTERNATIVE OXIDASE; FUNGAL PROTEIN; OXIDOREDUCTASE;

AMINO ACID SEQUENCE; ARTICLE; BIOLOGICAL MODEL; BIOSYNTHESIS; CHEMISTRY; ENZYME ACTIVATION; ENZYMOLOGY; GEL CHROMATOGRAPHY; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; MUTATION; NEUROSPORA CRASSA; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT; WESTERN BLOTTING;

AMINO ACID SEQUENCE; BLOTTING, WESTERN; CHROMATOGRAPHY, GEL; ENZYME ACTIVATION; FUNGAL PROTEINS; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; MUTATION; NEUROSPORA CRASSA; OXIDOREDUCTASES; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT;

FUNGI; NEUROSPORA CRASSA; SACCHAROMYCES CEREVISIAE; SCHIZOSACCHAROMYCES POMBE;

EID: 70450240950     PISSN: 00319317     EISSN: 13993054     Source Type: Journal    
DOI: 10.1111/j.1399-3054.2009.01239.x     Document Type: Article

References (46)

1. Bertrand H, Argan A, Szakacs NA (1983) Genetic control of the biogenesis of cyanide insensitive respiration in Neurospora crassa. In: Schweyen RJ, Wolf K, Kaudewitz F (eds) Mitochondria 1983 Walter de Gruyter Co., Berlin, pp 495 507
2. Borghouts C, Werner A, Elthon TE, Osiewacz HD (2001) Copper-modulated gene expression and senescence in the filamentous fungus Podospora anserina. Mol Cell Biol 21 : 390 399
3. Butow RA, Avadhani NG (2004) Mitochondrial signalling: the retrograde response. Mol Cell 14 : 1 15
4. Chae MS, Lin CC, Kessler KE, Nargang CE, Tanton LL, Hahn LB, Nargang FE (2007a) Identification of an alternative oxidase induction motif in the promoter region of the aod-1 gene in Neurospora crassa. Genetics 175 : 1597 1606
5. Chae MS, Nargang CE, Cleary IA, Lin CC, Todd AT, Nargang FE (2007b) Two zinc cluster transcription factors control induction of alternative oxidase in Neurospora crassa. Genetics 177 : 1997 2006
6. Colot HV, Park G, Turner GE, Ringelberg C, Crew C, Litvinkova L, Weiss RL, Borkovich KA, Dunlap JC (2006) A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc Natl Acad Sci USA 103 : 10352 10357
7. Davis RH, De Serres FJ (1970) Genetic and microbiological research techniques for Neurospora crassa. Methods Enzymol 17 : 79 143
8. Descheneau AT, Cleary IA, Nargang FE (2005) Genetic evidence for a regulatory pathway controlling alternative oxidase production in Neurospora crassa. Genetics 169 : 123 135
9. Dufour E, Boulay J, Rincheval V, Sainsard-Chanet A (2000) A causal link between respiration and senescence in Podospora anserina. Proc Natl Acad Sci USA 97 : 4138 4143
10. Edwards DL, Chalmers JH Jr., Guzik HJ, Warden JT (1976) Assembly of the cyanide-insensitive respiratory pathway in Neurospora crassa. In: Bucher TH, Neupert W, Sebald W, Werner S (eds) Genetics and Biogenesis of Chloroplasts and Mitochondria Elsevier/North-Holland Biomedical Press, Amsterdam, pp 865 872
11. Funes S, Nargang FE, Neupert W, Herrmann JM (2004) The Oxa2 protein of Neurospora crassa plays a critical role in the biogenesis of cytochrome oxidase an defines a ubiquitous subbranch of the Oxa1/YidC/Alb3 protein family. Mol Biol Cell 15 : 1853 1861
12. Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma L-J, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CPC, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature 422 : 859 868 (Pubitemid 36520034)
13. Good AG, Crosby WL (1989) Anaerobic induction of alanine aminotransferase in barley root tissue. Plant Physiol 90 : 1305 1309
14. Huh W, Kang S (2001) Characterization of the gene family encoding alternative oxidase from Candida albicans. Biochem J 356 : 595 604
15. Huh W, Song YB, Lee Y, Ha C, Kim S, Kang S (2008) D-erythroascorbic acid activates cyanide-resistant respiration in Candida albicans. Biochem Biophys Res Comm 369 : 401 406
16. Hwang C-S, Baek Y-U, Yim H-S, Kang S-O (2003) Protective roles of mitochondrial manganese-containing superoxide dismutase against various stresses in Candida albicans. Yeast 20 : 929 941
17. Hynes MJ, Szewczyk E, Murray SL, Suzuki Y, Davis MA, Sealy-Lewis HM (2007) Transcriptional control of gluconeogenesis in Aspergillus nidulans. Genetics 176 : 139 150
18. Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 98 : 4569 4574
19. Jia Y, Rothermel B, Thornton J, Butow RA (1997) A basic helix-loop-helix-leucine zipper transcription complex in yeast functions in a signaling pathway from mitochondria to the nucleus. Mol Cell Biol 17 : 1110 1117
20. Joseph-Horne T, Holloman DW, Wood PM (2001) Fungal respiration: a fusion of standard and alternative components. Biochim Biophys Acta 1504 : 179 195
21. Kirchman PA, Kim S, Lai CY, Jazwinski SM (1999) Interorganelle signaling is a determinant of longevity in Saccharomyces cerevisiae. Genetics 152 : 179 190
22. Kirimura K, Matsui T, Sugano S, Usami S (1996) Enhancement and repression of cyanide-insensitive respiration in Aspergillus niger. FEMS Microbiol Lett 141 : 251 254
23. Koonin EV (1994) Yeast protein controlling inter-organelle communication is related to bacterial phosphatases containing the Hsp70-type ATP-binding domain. Trends Biochem Sci 19 : 156 157
24. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 : 680 685
25. Lambowitz AM, Slayman CW (1971) Cyanide-resistant respiration in Neurospora crassa. J Bacteriol 108 : 1087 1093
26. Lambowitz AM, Sabourin JR, Bertand H, Nickels R, McIntosh L (1989) Immunological identification of the alternative oxidase of Neurospora crassa mitochondria. Mol Cell Biol 9 : 1362 1364
27. Li Q, Ritzel RG, McLean LTT, McIntosh L, Ko T, Bertrand H, Nargang FE (1996) Cloning and analysis of the alternative oxidase of Neurospora crassa. Genetics 142 : 129 140
28. Liao X, Butow RA (1993) RTG1 and RTG2: two yeast genes required for a novel path of communication from mitochondria to the nucleus. Cell 72 : 61 71
29. Liu Z, Butow RA (2006) Mitochondrial retrograde regulation. Annu Rev Genet 40 : 159 185
30. MacPherson S, Larochelle M, Turcotte B (2006) A fungal family of transcriptional regulators: the zinc cluster proteins. Microbiol Mol Biol 70 : 583 604
31. Magnani T, Soriani FM, Martins VP, Nascimento AM, Tudella VG, Curti C, Uyemura SA (2007) Cloning and functional expression of the mitochondrial alternative oxidase of Aspergillus fumigatus and its induction by oxidative stress. FEMS Microbiol Lett 271 : 230 238
32. McDonald AE (2008) Alternative oxidase: an inter-kingdom perspective on the function and regulation of this broadly distributed "cyanide- resistant" terminal oxidase. Funct Plant Biol 35 : 535 552
33. Minagawa N, Koga S, Nakano M, Sakajo S, Yoshimoto A (1992) Possible involvement of superoxide anion in the induction of cyanide-resistant respiration in Hansenula anomala. FEBS Lett 302 : 217 219
34. Minagawa N, Kariya H, Kumaraswami NS, Kamimura I, Sakajo S, Yoshimoto A (2002) Zinc is involved in the expression of a nuclear-encoded alternative oxidase gene in the yeast Hansenula anomala. Biosci Biotech Biochem 66 : 2645 2650
35. Mizutani A, Yukioka H, Tamura H, Miki N, Masuko M, Takeda R (1995) Respiratory characteristics in Pyricularia oryzae exposed to a novel alkoxyiminoacetamide fungicide. Phytopathology 85 : 306 311
36. Ninomiya Y, Suzuki K, Ishii C, Inoue H (2004) Highly efficient gene replacements in Neurospora strains deficient for nonhomologous end-joining. Proc Natl Acad Sci USA 101 : 12248 12253
37. Rhoads DM, Vanlerberghe GC (2004) Mitochondria-nucleus interactions: Evidence for mitochondrial retrograde communication in plant cells. In: Day DA, Millar AH, Whelan J (eds) Plant Mitochondria: From Genome to Function Kluwer Academic Publishers, Great Britain, pp 83 106
38. Sakajo S, Minagawa N, Yoshimoto A (1993) Characterization of the alternative oxidase protein in the yeast Hansenula anomala. FEBS 318 : 310 312
39. Schjerling P, Holmberg S (1996) Comparative amino acid sequence analysis of the C6 zinc cluster family of transcriptional regulators. Nucleic Acids Res 24 : 4599 4607
40. Sellem CH, Bovier E, Lorin S, Sainsard-Chanet A (2009) Mutations in two zinc cluster proteins activate alternative respiratory and gluconeogenic pathways and restore senescence in long-lived respiratory mutants of Podospora anserina. Genetics in press
41. Shi N-Q, Davis B, Sherman F, Cruz J, Jeffries TW (1999) Disruption of the cytochrome $c$ gene in xylose-utilizing yeast Pichia stipitis leads to higher ethanol production. Yeast 15 : 1021 1030
42. Soontorngun N, Larochelle M, Drouin S, Robert F, Turcotte B (2007) Regulation of gluconeogenesis in Saccharomyces cerevisiae is mediated by activator and repressor functions of Rds2. Mol Cell Biol 27 : 7895 7905
43. Tanton LL, Nargang CE, Kessler KE, Li Q, Nargang FE (2003) Alternative oxidase expression in Neurospora crassa. Fungal Genet Biol 39 : 176 190
44. Taylor R, McHale B, Nargang FE (2003) Characterization of Neurospora crassa Tom40-deficient mutants and effect of specific mutations on Tom40 assembly. J Biol Chem 278 : 765 775
45. Tissieres A, Mitchell HK, Haskins FA (1953) Studies on the respiratory system of the poky strain of Neurospora. J Biol Chem 205 : 423 433
46. Yukioka H, Inagaki S, Tanaka R, Katoh K, Miki N, Mizutani A, Masuko M (1998) Transcriptional activation of the alternative oxidase gene of the fungus Magnaporthe grisea by a respiratory-inhibiting fungicide and hydrogen peroxide. Biochim Biophys Acta 1442 : 161 169