Novel members of the family Micromonosporaceae, Rugosimonospora acidiphila gen. nov., sp. nov. and Rugosimonospora africana sp. nov

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 11, 2009, Pages 2752-2758

  Monciardini, Paolo ^a,b   Cavaletti, Linda ^a,f   Ranghetti, Anna ^a   Schumann, Peter ^c   Rohde, Manfred ^d   Bamonte, Ruggiero ^a,g   Sosio, Margherita ^a,b   Mezzelani, Alessandra ^e   Donadio, Stefano ^b  

^a Vicuron Pharmaceuticals   (Italy)

^b Ktedogen Srl   (Italy)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

^d HELMHOLTZ CENTRE FOR INFECTION RESEARCH   (Germany)

^e CNR   (Italy)

^f Fondazione Istituto Insubrico Ricerca Per la Vita   (Italy)

^g Bayer SpA Italy   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; AMINOPHOSPHOLIPID; ARABINOSE; BACTERIAL RNA; CARDIOLIPIN; DIAMINOPIMELIC ACID; FATTY ACID; GALACTOSE; GLUTAMIC ACID; GLYCINE; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; PHOSPHOLIPID; RNA 16S; XYLOSE;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA CONTENT; GENE SEQUENCE; MICROMONOSPORACEAE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RUGOSIMONOSPORA ACIDIPHILA; RUGOSIMONOSPORA AFRICANA; SEQUENCE ANALYSIS;

DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MICROMONOSPORACEAE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

ACTINOBACTERIA (CLASS); MICROMONOSPORACEAE; POSIBACTERIA;

EID: 70450236998     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.010231-0     Document Type: Article

References (34)

1. Aizawa, T., Ve, N. B., Kimoto, K., Iwabuchi, N., Sumida, H., Hasegawa, I., Sasaki, S., Tamura, T., Kudo, T. & other authors (2007). Curtobacterium ammoniigenes sp. nov., an ammonia-producing bacterium isolated from plants inhabiting acidic swamps in actual acid sulfate soil areas of Vietnam. Int J Syst Evol Microbiol 57, 1447-1452.
2. Ara, I. & Kudo, T. (2007a). Luedemannella gen. nov., a new member of the family Micromonosporaceae and description of Luedemannella helvata sp. nov. and Luedemannella flava sp. nov. J Gen Appl Microbiol 53, 39-51.
3. Ara, I. & Kudo, T. (2007b). Krasilnikovia gen. nov., a new member of the family Micromonosporaceae and description of Krasilnikovia cinnamonea sp. nov. Actinomycetologica 21, 1-10.
4. Ara, I., Matsumoto, A., Bakir, M. A., Kudo, T., Omura, S. & Takahashi, Y. (2008a). Pseudosporangium ferrugineum gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 58, 1644-1652.
5. Ara, I., Bakir, M. A. & Kudo, T. (2008b). Transfer of Catellatospora koreensis Lee et al. 2000 as Catelliglobosispora koreensis gen. nov., comb. nov. and Catellatospora tsunoense Asano et al. 1989 as Hamadaea tsunoense gen. nov., comb. nov., and emended description of the genus Catellatospora Asano and Kawamoto 1986 emend. Lee and Hah 2002. Int J Syst Evol Microbiol 58, 1950-1960.
6. Busti, E., Cavaletti, L., Monciardini, P., Schumann, P., Rohde, M., Sosio, M. & Donadio, S. (2006). Catenulispora acidiphila gen. nov., sp. nov., representative of a new evolutionary line of descent within the filamentous actinomycetes. Int J Syst Evol Microbiol 56, 1741-1746.
7. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
8. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
9. Donadio, S., Busti, E., Monciardini, P., Bamonte, R., Mazza, P., Sosio, M. & Cavaletti, L. (2005). Sources of polyketides and nonribosomal peptides. In Biocombinatorial Approaches for Drug Finding, pp. 19-41. Edited by W. Wohlleben, T. Spellig & B. Müller-Tiemann. Berlin: Springer.
10. Felsenstein, J. (2005). PHYLIP (phylogeny inference package) version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
11. Gauze, G. F., Preobrazhenskaya, T. P., Kudrina, E. S., Blinov, M. O., Ryabova, I. D. & Sveshnikova, M. A. (1957). Problems in the Classification of Antagonistic Actinomycetes. Moscow: State Publishing House for Medical Literature (in Russian).
12. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
13. Jensen, P. R. & Mafnas, C. (2006). Biogeography of the marine actinomycete Salinispora. Environ Microbiol 8, 1881-1888.
14. Koch, C., Kroppenstedt, R. M., Rainey, F. A. & Stackebrandt, E. (1996). 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae. Int J Syst Bacteriol 46, 765-768.
15. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
16. Krasil'nikov, N. A. (1938). Ray Fungi and Related Organisms - Actinomycetales. Moscow: Akademii Nauk SSSR (in Russian).
17. MacKenzie, S. L. (1984). Amino acids and peptides. In Gas Chromatography/Mass Spectrometry Applications in Microbiology, pp. 157-204. Edited by G. Odham, L. Larsson & P.-A. Mårdh. New York: Plenum.
18. Maerz, A. & Paul, M. R. (1950). Dictionary of Color, 2nd edn. New York: McGraw-Hill.
19. Maldonado, L. A., Fenical, W., Jensen, P. R., Kauffman, C. A., Mincer, T. J., Ward, A. C., Bull, A. T. & Goodfellow, M. (2005). Salinispora arenicola gen. nov., sp. nov. and Salinispora tropica sp. nov., obligate marine actinomycetes belonging to the family Micromonosporaceae. Int J Syst Evol Microbiol 55, 1759-1766.
20. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acids methyl esters, including hydroxy acids. J Clin Microbiol 16, 584-586.
21. Monciardini, P., Cavaletti, L., Schumann, P., Rohde, M. & Donadio, S. (2003). Conexibacter woesei gen. nov., sp. nov., a novel representative of a deep evolutionary line of descent within the class Actinobacteria. Int J Syst Evol Microbiol 53, 569-576.
22. Qiu, F., Huang, Y., Sun, L., Zhang, X., Liu, Z. & Song, W. (2007). Leifsonia ginsengi sp. nov., isolated from ginseng root. Int J Syst Evol Microbiol 57, 405-408.
23. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
24. Schumann, P., Prauser, H., Rainey, F. A., Stackebrandt, E. & Hirsch, P. (1997). Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone. Int J Syst Bacteriol 47, 278-283.
25. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
26. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
27. Suter, M. A. (1978). Isolierung von Melanin-negativen Mutanten aus Streptomyces glaucescens. PhD thesis, Eidgenössische Technische Hochschule Zürich, Switzerland (no. 6276) (in German).
28. Suzuki, K. & Komagata, K. (1983). Taxonomic significance of cellular fatty acid composition in some coryneform bacteria. Int J Syst Bacteriol 33, 188-200.
29. Tamura, T., Hatano, K. & Suzuki, K. (2006). A new genus of the family Micromonosporaceae, Polymorphospora gen. nov., with description of Polymorphospora rubra sp. nov. Int J Syst Evol Microbiol 56, 1959-1964.
30. Thawai, C., Tanasupawat, S., Itoh, T. & Kudo, T. (2006). Actinocatenispora thailandica gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 56, 1789-1794.
31. Uchida, K., Kudo, T., Suzuki, K. & Nakase, T. (1999). A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45, 49-56.
32. Vaz-Moreira, I., Nobre, M. F., Ferreira, A. C.,Schumann, P., Nunes, O.C. & Manaia, C. M. (2008). Humibacter albus gen. nov., sp. nov., isolated from sewage sludge compost. Int J Syst Evol Microbiol 58, 1014-1018.
33. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L.H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
34. Wiese, J., Jiang, Y., Tang, S., Thiel, V., Schmaljohann, R., Xu, L., Jiang, C. & Imhoff, J. F. (2008). A new member of the family Micromonosporaceae, Planosporangium flavigriseum gen. nov., sp. nov. Int J Syst Evol Microbiol 58, 1324-1331.