메뉴 건너뛰기




Volumn , Issue , 2009, Pages 449-470

Isolation of DNA from Ancient Samples

Author keywords

[No Author keywords available]

Indexed keywords


EID: 70450231991     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1201/9781420070972-29     Document Type: Chapter
Times cited : (5)

References (55)
  • 1
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl, T., Instability and decay of the primary structure of DNA, Nature, 362: 709, 1993.
    • (1993) Nature , vol.362 , pp. 709
    • Lindahl, T.1
  • 2
    • 0000832946 scopus 로고
    • Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification
    • Pääbo, S., Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification, Proc. Natl. Acad. Sci. U. S. A., 86: 1939, 1989.
    • (1989) Proc. Natl. Acad. Sci. U. S. A , vol.86 , pp. 1939
    • Pääbo, S.1
  • 3
    • 0030052888 scopus 로고    scopus 로고
    • Molecular phylogeny of the extinct ground sloth Mylodon darwinii
    • Hoss, M, et al., Molecular phylogeny of the extinct ground sloth Mylodon darwinii, Proc. Natl. Acad. Sci. U. S. A., 93: 181, 1996.
    • (1996) Proc. Natl. Acad. Sci. U. S. A , vol.93 , pp. 181
    • Hoss, M.1
  • 4
    • 0028184510 scopus 로고
    • Molecular genetic analyses of the Tyrolean Ice Man
    • Handt, O. et al., Molecular genetic analyses of the Tyrolean Ice Man, Science, 264: 1775, 1994.
    • (1994) Science , vol.264 , pp. 1775
    • Handt, O.1
  • 5
    • 0242711368 scopus 로고    scopus 로고
    • The thermal history of human fossils and the likelihood of successful DNA amplification
    • Smith, C.I. et al. The thermal history of human fossils and the likelihood of successful DNA amplification, J. Human Evol., 45: 203, 2003.
    • (2003) J. Human Evol , vol.45 , pp. 203
    • Smith, C.I.1
  • 6
    • 0024970684 scopus 로고
    • Ancient DNA and the polymerase chain reaction. The emerging field of molecular archaeology
    • Paabo, S. et al. Ancient DNA and the polymerase chain reaction. The emerging field of molecular archaeology, J. Biol. Chem., 264: 9709, 1989.
    • (1989) J. Biol. Chem , vol.264 , pp. 9709
    • Paabo, S.1
  • 7
    • 33748783644 scopus 로고    scopus 로고
    • Inaugural article: Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA
    • Stiller, M. et al., Inaugural article: Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA, Proc. Natl. Acad. Sci. U. S. A., 103: 13578, 2006.
    • (2006) Proc. Natl. Acad. Sci. U. S. A , vol.103 , pp. 13578
    • Stiller, M.1
  • 8
    • 10244241815 scopus 로고    scopus 로고
    • DNA from ancient stone tools and bones excavated at Bugas-Holding, Wyoming
    • Shanks, O.C. et al., DNA from ancient stone tools and bones excavated at Bugas-Holding, Wyoming, J. Archaeol. Sci., 32: 27, 2005.
    • (2005) J. Archaeol. Sci , vol.32 , pp. 27
    • Shanks, O.C.1
  • 9
    • 15744383335 scopus 로고    scopus 로고
    • Biochemical and physical correlates of DNA contamination in archaeological human bones and teeth excavated at Matera, Italy
    • Gilbert, M.T.P. et al., Biochemical and physical correlates of DNA contamination in archaeological human bones and teeth excavated at Matera, Italy, J. Archaeol. Sci., 32: 785, 2005.
    • (2005) J. Archaeol. Sci , vol.32 , pp. 785
    • Gilbert, M.T.P.1
  • 10
    • 0001215415 scopus 로고
    • Authenticating DNA extracted from ancient skeletal remains
    • Richards, M.B. et al., Authenticating DNA extracted from ancient skeletal remains, J. Archaeol. Sci., 22: 291, 1995.
    • (1995) J. Archaeol. Sci , vol.22 , pp. 291
    • Richards, M.B.1
  • 11
    • 0036098615 scopus 로고    scopus 로고
    • Detection of bone glue treatment as a major source of contamination in ancient DNA analyses
    • Nicholson, G.J. et al., Detection of bone glue treatment as a major source of contamination in ancient DNA analyses, Am. J. Physic. Anthropol., 118: 117, 2002.
    • (2002) Am. J. Physic. Anthropol , vol.118 , pp. 117
    • Nicholson, G.J.1
  • 12
    • 34447092494 scopus 로고    scopus 로고
    • Animal DNA in PCR reagents plagues ancient DNA research
    • Leonard, J.A. et al., Animal DNA in PCR reagents plagues ancient DNA research, J. Archaeol. Sci., 34: 1361, 2007.
    • (2007) J. Archaeol. Sci , vol.34 , pp. 1361
    • Leonard, J.A.1
  • 13
    • 31144442151 scopus 로고    scopus 로고
    • Metagenomics to paleogenomics: Large-scale sequencing of mammoth DNA
    • Poinar, H.N. et al., Metagenomics to paleogenomics: Large-scale sequencing of mammoth DNA, Science, 311: 392, 2006.
    • (2006) Science , vol.311 , pp. 392
    • Poinar, H.N.1
  • 14
    • 33751077282 scopus 로고    scopus 로고
    • Analysis of one million base pairs of Neanderthal DNA
    • Green, R.E. et al., Analysis of one million base pairs of Neanderthal DNA, Nature, 444: 330, 2006.
    • (2006) Nature , vol.444 , pp. 330
    • Green, R.E.1
  • 15
    • 35948953261 scopus 로고    scopus 로고
    • Inconsistencies in Neanderthal genomic DNA sequences
    • Wall, J.D. and Kim, S.K., Inconsistencies in Neanderthal genomic DNA sequences, PLoS Genet., 3: e175, 2007.
    • (2007) PLoS Genet , vol.3 , pp. e175
    • Wall, J.D.1    Kim, S.K.2
  • 16
    • 0347373691 scopus 로고    scopus 로고
    • Sub-micron spongiform porosity is the major ultra-structural alteration occurring in archaeological bone
    • Turner-Walker, G. et al., Sub-micron spongiform porosity is the major ultra-structural alteration occurring in archaeological bone, Int. J. Osteoarchaeol., 12: 407, 2002.
    • (2002) Int. J. Osteoarchaeol , vol.12 , pp. 407
    • Turner-Walker, G.1
  • 17
    • 33646167599 scopus 로고    scopus 로고
    • Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA
    • Gilbert, M.T.P. et al., Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA, Int. J. Osteoarchaeol., 16: 156, 2006.
    • (2006) Int. J. Osteoarchaeol , vol.16 , pp. 156
    • Gilbert, M.T.P.1
  • 18
    • 25444531189 scopus 로고    scopus 로고
    • Relatively well preserved DNA is present in the crystal aggregates of fossil bones
    • Salamon, M. et al., Relatively well preserved DNA is present in the crystal aggregates of fossil bones, Proc. Natl. Acad. Sci. U. S. A., 102: 13783, 2005.
    • (2005) Proc. Natl. Acad. Sci. U. S. A , vol.102 , pp. 13783
    • Salamon, M.1
  • 19
    • 24744437359 scopus 로고    scopus 로고
    • Extensive human DNA contamination in extracts from ancient dog bones and teeth
    • Malmstrom, H., et al., Extensive human DNA contamination in extracts from ancient dog bones and teeth, Mol. Biol. Evol., 22: 2040, 2005.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 2040
    • Malmstrom, H.1
  • 20
    • 34848867598 scopus 로고    scopus 로고
    • Whole-genome shotgun sequencing of mitochondria from ancient hair shafts
    • Gilbert, M.T.P. et al., Whole-genome shotgun sequencing of mitochondria from ancient hair shafts, Science, 317: 1927, 2007.
    • (2007) Science , vol.317 , pp. 1927
    • Gilbert, M.T.P.1
  • 21
    • 2942702305 scopus 로고    scopus 로고
    • Ancient mitochondrial DNA from hair
    • Gilbert, M.T.P. et al., Ancient mitochondrial DNA from hair, Curr. Biol., 14: 463, 2004.
    • (2004) Curr. Biol , vol.14 , pp. 463
    • Gilbert, M.T.P.1
  • 22
    • 34248549305 scopus 로고    scopus 로고
    • Comparison and optimization of ancient DNA extraction
    • Rohland, N. and Hofreiter, M., Comparison and optimization of ancient DNA extraction, Biotechniques, 42: 343, 2007.
    • (2007) Biotechniques , vol.42 , pp. 343
    • Rohland, N.1    Hofreiter, M.2
  • 23
    • 0035426763 scopus 로고    scopus 로고
    • Stabilization of solutions of feather keratins by sodium dodecyl sulfate
    • Schrooyen, P.M.M. et al., Stabilization of solutions of feather keratins by sodium dodecyl sulfate, J. Colloid Interface Sci., 240: 30, 2001.
    • (2001) J. Colloid Interface Sci , vol.240 , pp. 30
    • Schrooyen, P.M.M.1
  • 25
    • 0032540901 scopus 로고    scopus 로고
    • Molecular coproscopy: Dung and diet of the extinct ground sloth Nothrotheriops shastensis
    • Poinar, H.N. et al., Molecular coproscopy: Dung and diet of the extinct ground sloth Nothrotheriops shastensis, Science, 281: 402, 1998.
    • (1998) Science , vol.281 , pp. 402
    • Poinar, H.N.1
  • 26
    • 0025089978 scopus 로고
    • Rapid and simple method for purification of nucleic acids
    • Boom, R. et al., Rapid and simple method for purification of nucleic acids, J. Clin. Microbiol., 28: 495, 1990.
    • (1990) J. Clin. Microbiol , vol.28 , pp. 495
    • Boom, R.1
  • 27
    • 29244451078 scopus 로고    scopus 로고
    • Adsorption of duplex DNA on mesoporous silicas: Possibility of inclusion of DNA into their mesopores
    • Fujiwara, M. et al., Adsorption of duplex DNA on mesoporous silicas: Possibility of inclusion of DNA into their mesopores, Anal. Chem., 77: 8138, 2005.
    • (2005) Anal. Chem , vol.77 , pp. 8138
    • Fujiwara, M.1
  • 28
    • 0347100059 scopus 로고
    • Y-Chromosomal DNA from ancient bones
    • Springer-Verlag
    • Hummel, S. and Herrmann, B., Y-Chromosomal DNA from ancient bones. In: Ancient DNA, pp. 205-210, Springer-Verlag, 1994.
    • (1994) Ancient DNA , pp. 205-210
    • Hummel, S.1    Herrmann, B.2
  • 29
    • 0034840326 scopus 로고    scopus 로고
    • Determining isotopic life history trajectories using bone density fractionation and stable isotope measurements: A new approach
    • Bell, L.S. et al., Determining isotopic life history trajectories using bone density fractionation and stable isotope measurements: A new approach, Am. J. Phys. Anthropol., 116: 66, 2001.
    • (2001) Am. J. Phys. Anthropol , vol.116 , pp. 66
    • Bell, L.S.1
  • 30
    • 0029130110 scopus 로고
    • A genetic study of 2, 000-year-old human remains from Japan using mitochondrial DNA sequences
    • Oota, H., A genetic study of 2, 000-year-old human remains from Japan using mitochondrial DNA sequences, Am. J. Phys. Anthropol., 98: 133, 1995.
    • (1995) Am. J. Phys. Anthropol , vol.98 , pp. 133
    • Oota, H.1
  • 31
    • 0031470484 scopus 로고    scopus 로고
    • Neandertal DNA sequences and the origin of modern humans
    • Krings, M. et al., Neandertal DNA sequences and the origin of modern humans, Cell, 90: 19, 1997.
    • (1997) Cell , vol.90 , pp. 19
    • Krings, M.1
  • 32
    • 0031921276 scopus 로고    scopus 로고
    • Technical note: Improved DNA extraction from ancient bones using silica-based spin columns
    • Yang, D.Y. et al., Technical note: Improved DNA extraction from ancient bones using silica-based spin columns, Am. J. Phys. Anthropol., 105: 539, 1998.
    • (1998) Am. J. Phys. Anthropol , vol.105 , pp. 539
    • Yang, D.Y.1
  • 33
    • 0034934574 scopus 로고    scopus 로고
    • Methods for the study of ancient hair: Radiocarbon dates and gene sequences from individual hairs
    • Bonnichsen, R. et al., Methods for the study of ancient hair: Radiocarbon dates and gene sequences from individual hairs, J. Archaeol. Sci., 28: 775, 2001.
    • (2001) J. Archaeol. Sci , vol.28 , pp. 775
    • Bonnichsen, R.1
  • 34
    • 0004136246 scopus 로고    scopus 로고
    • 3rd edn. (ed.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Sambrook, J. et al., Molecular Cloning: A Laboratory Manual, 3rd edn. (ed.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 2001.
    • (2001) Molecular Cloning: A Laboratory Manual
    • Sambrook, J.1
  • 35
    • 17644380660 scopus 로고    scopus 로고
    • Ancient plant DNA: Review and prospects
    • Gugerli, F. et al., Ancient plant DNA: Review and prospects. New Phytol., 166: 409, 2005.
    • (2005) New Phytol , vol.166 , pp. 409
    • Gugerli, F.1
  • 36
    • 0029197991 scopus 로고
    • The use of herbarium specimens in DNA phylogenetics: Evaluation and improvement
    • Savolainen, V. et al., The use of herbarium specimens in DNA phylogenetics: Evaluation and improvement, Plant Syst. Evol., 197: 87, 1995.
    • (1995) Plant Syst. Evol , vol.197 , pp. 87
    • Savolainen, V.1
  • 37
    • 22144479356 scopus 로고    scopus 로고
    • Morphological and genetic studies of waterlogged Prunus species from the Roman vicus Tasgetium (Eschenz, Switzerland)
    • Pollmann, B. et al., Morphological and genetic studies of waterlogged Prunus species from the Roman vicus Tasgetium (Eschenz, Switzerland), J. Archaeol. Sci., 32: 1471, 2005.
    • (2005) J. Archaeol. Sci , vol.32 , pp. 1471
    • Pollmann, B.1
  • 38
    • 24944484242 scopus 로고    scopus 로고
    • Ancient DNA from pollen: A genetic record of population history in Scots pine
    • Parducci, L. et al., Ancient DNA from pollen: A genetic record of population history in Scots pine, Mol. Ecol., 14: 2873, 2005.
    • (2005) Mol. Ecol , vol.14 , pp. 2873
    • Parducci, L.1
  • 39
    • 33750457298 scopus 로고    scopus 로고
    • Authenticated DNA from ancient wood remains
    • Liepelt, S. et al., Authenticated DNA from ancient wood remains, Ann. Botany, 98: 1107, 2006.
    • (2006) Ann. Botany , vol.98 , pp. 1107
    • Liepelt, S.1
  • 40
    • 34447337482 scopus 로고    scopus 로고
    • Ancient biomolecules from deep ice cores reveal a forested southern Greenland
    • Willerslev, E. et al., Ancient biomolecules from deep ice cores reveal a forested southern Greenland, Science, 317: 111, 2007.
    • (2007) Science , vol.317 , pp. 111
    • Willerslev, E.1
  • 41
    • 0014560637 scopus 로고
    • Properties of formaldehyde-treated nucleohistone
    • Brutlag, D. et al., Properties of formaldehyde-treated nucleohistone, Biochemistry, 8: 3214, 1969.
    • (1969) Biochemistry , vol.8 , pp. 3214
    • Brutlag, D.1
  • 42
    • 77951631386 scopus 로고    scopus 로고
    • The isolation of nucleic acids from fixed, paraffin-embedded tissues’ which methods are useful when?
    • Gilbert, M.T.P. et al., The isolation of nucleic acids from fixed, paraffin-embedded tissues’ which methods are useful when? PLoS ONE 2, e537, 2007.
    • (2007) PLoS ONE , vol.2 , pp. e537
    • Gilbert, M.T.P.1
  • 43
    • 0036321629 scopus 로고    scopus 로고
    • DNA extraction from archival formalin-fixed, paraffin-embedded tissue sections based on the antigen retrieval principle: Heating under the influence of pH
    • Shi, S.R. et al., DNA extraction from archival formalin-fixed, paraffin-embedded tissue sections based on the antigen retrieval principle: Heating under the influence of pH, J. Histochem. Cytochem., 50: 1005, 2002.
    • (2002) J. Histochem. Cytochem , vol.50 , pp. 1005
    • Shi, S.R.1
  • 44
    • 5644228885 scopus 로고    scopus 로고
    • DNA extraction from archival formalin-fixed, paraffin-embedded tissues: Heat-induced retrieval in alkaline solution
    • Shi, S.R. et al., DNA extraction from archival formalin-fixed, paraffin-embedded tissues: Heat-induced retrieval in alkaline solution, Histochem. Cell Biol., 122: 211, 2004.
    • (2004) Histochem. Cell Biol , vol.122 , pp. 211
    • Shi, S.R.1
  • 45
    • 0037741943 scopus 로고    scopus 로고
    • Diverse plant and animal genetic records from Holocene and Pleistocene sediments
    • Willerslev, E. et al., Diverse plant and animal genetic records from Holocene and Pleistocene sediments, Science, 300: 791, 2003.
    • (2003) Science , vol.300 , pp. 791
    • Willerslev, E.1
  • 46
    • 13644270537 scopus 로고    scopus 로고
    • Beringian paleoecology inferred from permafrost-preserved fungal DNA
    • Lydolph, M.C. et al., Beringian paleoecology inferred from permafrost-preserved fungal DNA, Appl. Environ. Microbiol., 71: 1012, 2005.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1012
    • Lydolph, M.C.1
  • 47
    • 33748741378 scopus 로고    scopus 로고
    • Repeat silica extraction: A simple technique for the removal of PCR inhibitors from DNA extracts
    • Kemp, B.M. et al., Repeat silica extraction: A simple technique for the removal of PCR inhibitors from DNA extracts, J. Archaeol. Sci., 33: 1680, 2006.
    • (2006) J. Archaeol. Sci , vol.33 , pp. 1680
    • Kemp, B.M.1
  • 48
    • 0037672146 scopus 로고    scopus 로고
    • Nuclear gene sequences from a late Pleistocene sloth coprolite
    • Poinar, H. et al., Nuclear gene sequences from a late Pleistocene sloth coprolite, Curr. Biol., 13: 1150, 2003.
    • (2003) Curr. Biol , vol.13 , pp. 1150
    • Poinar, H.1
  • 49
    • 44049093102 scopus 로고    scopus 로고
    • DNA from pre-Clovis coprolites in Oregon, North America
    • Gilbert, M.T.P. et al., DNA from pre-Clovis coprolites in Oregon, North America. Science, 320: 786, 2008.
    • (2008) Science , vol.320 , pp. 786
    • Gilbert, M.T.P.1
  • 50
    • 0034521522 scopus 로고    scopus 로고
    • A molecular analysis of ground sloth diet through the last glaciation
    • Hofreiter, M. et al., A molecular analysis of ground sloth diet through the last glaciation, Mol. Ecol., 9: 1975, 2000.
    • (2000) Mol. Ecol , vol.9 , pp. 1975
    • Hofreiter, M.1
  • 51
    • 0035836725 scopus 로고    scopus 로고
    • A molecular analysis of dietary diversity for three archaic Native Americans
    • Poinar, H.N. et al., A molecular analysis of dietary diversity for three archaic Native Americans, Proc. Natl. Acad. Sci. U. S. A., 98: 4317, 2001.
    • (2001) Proc. Natl. Acad. Sci. U. S. A , vol.98 , pp. 4317
    • Poinar, H.N.1
  • 52
    • 9444220256 scopus 로고    scopus 로고
    • Rise and fall of the Beringian Steppe bison
    • Shapiro, B., et al., Rise and fall of the Beringian Steppe bison, Science, 306: 1561, 2004.
    • (2004) Science , vol.306 , pp. 1561
    • Shapiro, B.1
  • 53
    • 2442560471 scopus 로고    scopus 로고
    • Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens
    • Rohland, N., Siedel, H., and Hofreiter, M., Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens, Biotechniques, 36: 814, 2004.
    • (2004) Biotechniques , vol.36 , pp. 814
    • Rohland, N.1    Siedel, H.2    Hofreiter, M.3
  • 54
    • 38849101473 scopus 로고    scopus 로고
    • DNA extraction from dry museum beetles without conferring external morphological damage
    • Gilbert, M.T.P. et al., DNA extraction from dry museum beetles without conferring external morphological damage, PLoS ONE 2, e272, 2007.
    • (2007) PLoS ONE , vol.2 , pp. e272
    • Gilbert, M.T.P.1
  • 55
    • 35848947197 scopus 로고    scopus 로고
    • Vouchering DNA-barcoded specimens: Test of a nondestructive extraction protocol for terrestrial arthropods
    • Rowley, D.L. et al., Vouchering DNA-barcoded specimens: Test of a nondestructive extraction protocol for terrestrial arthropods, Mol. Ecol. Notes, 7: 915, 2007.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 915
    • Rowley, D.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.