Penitentiary population of Mycobacterium tuberculosis in Kyrgyzstan: Exceptionally high prevalence of the Beijing genotype and its Russia-specific subtype

Infection, Genetics and Evolution

Volumn 9, Issue 6, 2009, Pages 1400-1405

  Mokrousov, Igor ^a,b   Valcheva, Violeta ^a,c   Sovhozova, Nurmira ^d   Aldashev, Almaz ^d   Rastogi, Nalin ^a   Isakova, Jainagul ^d  

^a Unite de la Tuberculose et des Mycobacteries   (Guadeloupe)

^b ST PETERSBURG PASTEUR INSTITUTE   (Russian Federation)

^c INSTITUTE OF MICROBIOLOGY   (Bulgaria)

^d Institute of Molecular Biology and Medicine   (Kyrgyzstan)

Author keywords

Drug resistance mutations; Multidrug resistant tuberculosis; Penitentiary population; Phylogeography; Spoligotyping; VNTR

Indexed keywords

DNA; ISONIAZID; RIFAMPICIN;

ADULT; ARTICLE; BACTERIAL STRAIN; CHINA; CONTROLLED STUDY; DNA EXTRACTION; GENE LOCUS; GENOTYPE; HIGH RISK POPULATION; HUMAN; INCIDENCE; KYRGYZSTAN; LUNG TUBERCULOSIS; MAJOR CLINICAL STUDY; MALE; MULTIDRUG RESISTANCE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PREVALENCE; PRIORITY JOURNAL; RUSSIAN FEDERATION; VARIABLE NUMBER OF TANDEM REPEAT;

ADULT; ANTIBIOTICS, ANTITUBERCULAR; DNA, BACTERIAL; DRUG RESISTANCE, MULTIPLE, BACTERIAL; GENETIC VARIATION; GENOME, BACTERIAL; HUMANS; ISONIAZID; KYRGYZSTAN; MALE; MIDDLE AGED; MYCOBACTERIUM TUBERCULOSIS; PREVALENCE; PRISONERS; RIFAMPIN; TUBERCULOSIS, MULTIDRUG-RESISTANT; TUBERCULOSIS, PULMONARY;

MYCOBACTERIUM TUBERCULOSIS;

EID: 70450224475     PISSN: 15671348     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.meegid.2009.07.007     Document Type: Article

References (41)

1. Aerts A., Hauer B., Wanlin M., and Veen J. Tuberculosis and tuberculosis control in European prisons. Int. J. Tuberc. Lung Dis. 10 (2006) 1215-1223
2. Alisherov A.S., Sytina L.I., Myrzaliev B.B., Sulaimanova M.I., Aitekova V.M., Abdrakhmanova E.D., and Rysbekov Z.Z. Dynamics of the main epidemiological tuberculosis indicators in the Kyrgyz Republic, 2005-2007 years//Cent. Asian Med. J. 14 (2008) 271-275
3. Brudey K., Driscoll J.R., Rigouts L., Prodinger W.M., Gori A., Al-Hajoj S.A., Allix C., Aristimuno L., Arora J., Baumanis V., Binder L., Cafrune P., Cataldi A., Cheong S., Diel R., Ellermeier C., Evans J.T., Fauville-Dufaux M., Ferdinand S., Garcia de Viedma D., Garzelli C., Gazzola L., Gomes H.M., Gutierrez M.C., Hawkey P.M., van Helden P.D., Kadival G.V., Kreiswirth B.N., Kremer K., Kubin M., Kulkarni S.P., Liens B., Lillebaek T., Ly H.M., Martin C., Martin C., Mokrousov I., Narvskaia O., Ngeow Y.F., Naumann L., Niemann S., Parwati I., Rahim M.Z., Rasolofo-Razanamparany V., Rasolonavalona T., Rossetti M.L., Rusch-Gerdes S., Sajduda A., Samper S., Shemyakin I., Singh U.B., Somoskovi A., Skuce R., van Soolingen D., Streicher E.M., Suffys P.N., Tortoli E., Tracevska T., Vincent V., Victor T.C., Warren R., Yap S.F., Zaman K., Portaels F., Rastogi N., and Sola C. Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol. 6 (2006) 23
4. Carbonara S., Babudieri S., Longo B., Starnini G., Monarca R., Brunetti B., Andreonie M., Pastore G., De Marco V., and Rezza G. Correlates of Mycobacterium tuberculosis infection in a prison population. Eur. Respir. J. 25 (2005) 1070-1076 GLIP, (Gruppo di Lavoro Infettivologi Penitenziari)
5. Dela A., Sajduda A., Pawlowska I., and Dziadek J. Molecular characterization of Mycobacterium tuberculosis isolates from Lodz, Poland: Analysis by IS6110 restriction fragment length polymorphism and double-repetitive-element PCR. J. Infect. 52 (2006) 346-353
6. Drobniewski F., Balabanova Y., Ruddy M., Weldon L., Jeltkova K., Brown T., Malomanova N., Elizarova E., Melentyey A., Mutovkin E., Zhakharova S., and Fedorin I. Rifampin- and multidrug-resistant tuberculosis in Russian civilians and prison inmates: dominance of the Beijing strain family. Emerg. Infect. Dis. 8 (2002) 1320-1326
7. Drobniewski F.A., Balabanova Y.M., Ruddy M.C., Graham C., Kuznetzov S.I., Gusarova G.I., Zakharova S.M., Melentyev A.S., and Fedorin I.M. Tuberculosis, HIV seroprevalence and intravenous drug abuse in prisoners. Eur. Respir. J. 26 (2005) 298-304
8. Garcia de Viedma D., Alonso Rodriguez N., Andris S., Ruiz Serrano M.J., and Bouza E. Characterization of clonal complexity in tuberculosis by mycobacterial interspersed repetitive unit-variable-number tandem repeat typing. J. Clin. Microbiol. 43 (2005) 5660-5664
9. Gilman J., and Myatt M. EpiCalc 2000, version 1 02 (1998), Brixton Books, London, UK
10. Habeenzu C., Mitarai S., Lubasi D., Mudenda V., Kantenga T., Mwansa J., and Maslow J.N. Tuberculosis and multidrug resistance in Zambian prisons, 2000-2001. Int. J. Tuberc. Lung Dis. 11 (2007) 1216-1220
11. Hunter P.R., and Gaston M.A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26 (1988) 2465-2466
12. Ignatova A., Dubiley S., Stepanshina V., and Shemyakin I. Predominance of multi-drug-resistant LAM and Beijing family strains among Mycobacterium tuberculosis isolates recovered from prison inmates in Tula Region. Russ. J. Med. Microbiol. 55 (2006) 1413-1418
13. Ijaz K., Yang Z., Templeton G., Stead W.W., Bates J.H., and Cave M.D. Persistence of a strain of Mycobacterium tuberculosis in a prison system. Int. J. Tuberc. Lung. Dis. 8 (2004) 994-1000
14. Isakova Zh.T. Distribution of mutations in the rpoB, katG, inhA, ahpC gene of rifampicin and isoniazid resistant M. tuberculosis strains isolated in Kyrgyz Republic. Mol. Gen. Microbiol. Virusol. 4 (2008) 36-38 In Russian
15. Isakova Zh.T., Pak O.A., Iusupova E.Iu., Myrzaliev B.B., Chubakov T.Ch., Goncharova Z.A., Tumashova A.F., Kozhomkulov M.D., Kozhomkulov D.K., Alisherov A.Sh., Friedland J., and Aldashev A.A. Use of biological microchips in the determination of drug-resistance of Mycobacterium tuberculosis to rifampicin. Probl. Tuberk. Bolezn. Legk. 8 (2005) 50-53 In Russian
16. Isakova Zh.T., Goncharova Z.K., Iusupova E.U., Tumashova A.F., Kozhomkulov M.D., Kozhomkulov D.K., Chubakov T.Ch., Alisherov A.Sh., and Aldashev A.A. Analysis of mutations of multidrug-resistant M. tuberculosis strains in patients with tuberculosis in the Kyrghyz Republic. Probl Tuberk Bolezn Legk 4 (2007) 17-21 In Russian
17. Isakova Zh.T., Goncharova Z.K., Iusupova E.U., Pak O.A., Tumashova A.F., Kozhomkulov M.D., Kozhomkulov D.K., Chubakov T.Ch., Alisherov A.Sh., and Aldashev A.A. Statistically mapping modeling of the spread of rifampicin-resistant M. tuberculosis strains in different regions of the Kyrghyz Republic. Probl. Tuberk. Bolezn. Legk. 7 (2007) 33-36 In Russian
18. Ivanov I.Iu., Stepanshina V.N., Lipin M.Iu., Korobova O.V., and Shemiakin I.G. Spoligotypes of clinical Mycobacterium tuberculosis strains isolated in patients with tuberculosis in the Central Region of Russia. Probl Tuberk Bolezn Legk. 4 (2004) 23-27 In Russian
19. Iwamoto T., Yoshida S., Suzuki K., Tomita M., Fujiyama R., Tanaka N., Kawakami Y., and Ito M. Hypervariable loci that enhance the discriminatory ability of newly proposed 15-loci and 24-loci variable-number tandem repeat typing method on Mycobacterium tuberculosis strains predominated by the Beijing family. FEMS Microbiol. Lett. 272 (2007) 282-283
20. Jiao W.W., Mokrousov I., Sun G.Z., Li M., Liu J.W., Narvskaya O., and Shen A.D. Molecular characteristics of rifampin and isoniazid resistant Mycobacterium tuberculosis strains from Beijing. China. Chin. Med. J. (Engl.) 120 (2007) 814-819
21. Kamerbeek J., Schouls L., Kolk A., van Agterveld M., van Soolingen D., Kuijper S., Bunschoten A., Molhuizen H., Shaw R., Goyal M., and van Embden J.D.A. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J. Clin. Microbiol. 35 (1997) 907-914
22. Karaev, O., Zhusupov, K., 1996. Kyrgyzs: Origins, History, Ethnography. Sham, Bishkek, Kyrgyzstan, 524 pp. In Russian.
23. Kremer K., van Soolingen D., Frothingham R., Haas W.H., Hermans P.W., Martin C., Palittapongarnpim P., Plikaytis B.B., Riley L.W., Yakrus M.A., Musser J.M., and van Embden J.D.A. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility. J. Clin. Microbiol. 37 (1999) 2607-2618
24. Krüüner A., Hoffner S.E., Sillastu H., Danilovits M., Levina K., Svenson S.B., Ghebremichael S., Koivula T., and Källenius G. Spread of drug-resistant pulmonary tuberculosis in Estonia. J. Clin. Microbiol. 39 (2001) 3339-3345
25. Marais B.J., Victor T.C., Hesseling A.C., Barnard M., Jordaan A., Brittle W., Reuter H., Beyers N., van Helden P.D., Warren R.M., and Schaaf H.S. Beijing and Haarlem genotypes are overrepresented among children with drug-resistant tuberculosis in the Western Cape Province of South Africa. J. Clin. Microbiol. 44 (2006) 3539-3543
26. Martin A., Chaves F., Inigo J., Alonso M., Sola C., Rastogi N., Ruiz Serrano M.J., Palenque E., Bouza E., and Garcia de Viedma D. Molecular, epidemiological and infectivity characterisation of a Mycobacterium tuberculosis strain prevalent in Madrid. Clin. Microbiol. Infect. 13 (2007) 1210-1213
27. Millet J., Miyagi-Shiohira C., Yamane N., Sola C., and Rastogi N. Assessment of mycobacterial interspersed repetitive unit-QUB markers to further discriminate the Beijing genotype in a population-based study of the genetic diversity of Mycobacterium tuberculosis clinical isolates from Okinawa, Ryukyu Islands. Japan. J. Clin. Microbiol. 45 (2007) 3606-3615
28. Mokrousov I. Genetic geography of Mycobacterium tuberculosis Beijing genotype: a multifacet mirror of human history?. Infect. Genet. Evol. 8 (2008) 777-785
29. Mokrousov I., Otten T., Vyazovaya A., Limeschenko E., Filipenko M.L., Sola C., Rastogi N., Steklova L., Vyshnevskiy B., and Narvskaya O. PCR-based methodology for detecting multidrug-resistant strains of Mycobacterium tuberculosis Beijing family circulating in Russia. Eur. J. Clin. Microbiol. Infect. Dis. 22 (2003) 342-348
30. Mokrousov I., Narvskaya O., Limeschenko E., Vyazovaya A., Otten T., and Vyshnevskiy B. Analysis of the allelic diversity of the mycobacterial interspersed repetitive units in Mycobacterium tuberculosis strains of the Beijing family: practical implications and evolutionary considerations. J. Clin. Microbiol. 42 (2004) 2438-2444
31. Mokrousov I., Ly H.M., Otten T., Lan N.N., Vyshnevskyi B., Hoffner S., and Narvskaya O. Origin and primary dispersal of the Mycobacterium tuberculosis Beijing genotype: clues from human phylogeography. Genome Res. 15 (2005) 1357-1364
32. Mokrousov I., Narvskaya O., Vyazovaya A., Millet J., Otten T., Vishnevsky B., and Rastogi N. Mycobacterium tuberculosis Beijing genotype in Russia: in search of informative VNTR loci. J. Clin. Microbiol. 46 (2008) 3576-3584
33. Pfyffer G.E., Strässle A., van Gorkum T., Portaels F., Rigouts L., Mathieu C., Mirzoyev F., Traore H., and van Embden J.D. Multidrug-resistant tuberculosis in prison inmates Azerbaijan. Emerg. Infect. Dis. 7 (2001) 855-861
34. Ruddy M.C., Davies A.P., Yates M.D., Yates S., Balasegaram S., Drabu Y., Patel B., Lozewicz S., Sen S., Bahl M., James E., Lipman M., Duckworth G., Watson J.M., Piper M., Drobniewski F.A., and Maguire H. Outbreak of isoniazid resistant tuberculosis in north London. Thorax 59 (2004) 279-285
35. Shamputa I.C., Jugheli L., Sadradze N., Willery E., Portaels F., Supply P., and Rigouts L. Mixed infection and clonal representativeness of a single sputum sample in tuberculosis patients from a penitentiary hospital in Georgia. Respir. Res. 7 (2006) 99
36. Supply P., Lesjean S., Savine E., Kremer K., van Soolingen D., and Locht C. Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J. Clin. Microbiol. 39 (2001) 3563-3571
37. Swofford D.L. PAUP*: Phylogenetic Analysis Using Parsimony (and Other Methods) 4. 0 Beta (2002), Sinauer Associates, Sunderland, Massachusetts
38. Toungoussova O.S., Sandven P., Mariandyshev A.O., Nizovtseva N.I., Bjune G., and Caugant D.A. Spread of drug-resistant Mycobacterium tuberculosis strains of the Beijing genotype in the Archangel Oblast. Russ. J. Clin. Microbiol. 40 (2002) 1930-1937
39. Toungoussova O.S., Mariandyshev A., Bjune G., Sandven P., and Caugant D.A. Molecular epidemiology and drug resistance of Mycobacterium tuberculosis isolates in the Archangel prison in Russia: predominance of the W-Beijing clone family. Clin. Infect. Dis. 37 (2003) 665-672
40. Walmsley, R., 2005. World Prison population list. 8th edition. International center for prison studies, King's College London. http://www.kcl.ac.uk/schools/law/research/icps.
41. Walmsley, R., 2009. World Prison population list. 6th edition. International center for prison studies, King's College London. http://www.kcl.ac.uk/schools/law/research/icps.