Localization and characteristics of DNA underreplication zone in the 75C region of intercalary heterochromatin in Drosophila melanogaster polytene chromosomes

Chromosoma

Volumn 118, Issue 6, 2009, Pages 747-761

  Andreyenkova, Natalya G ^a   Kokoza, Elena B ^a   Semeshin, Valery F ^a   Belyaeva, Elena S ^a   Demakov, Sergey A ^a   Pindyurin, Alexey V ^a   Andreyeva, Eugenia N ^a   Volkova, Elena I ^a   Zhimulev, Igor F ^a  

^a INSTITUTE OF MOLECULAR AND CELLULAR BIOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME PROTEIN; DNA; PROTEIN SUUR; UNCLASSIFIED DRUG;

ARTICLE; CHROMOSOMAL LOCALIZATION; CHROMOSOME BAND; CHROMOSOME CONDENSATION; CHROMOSOME MAP; CHROMOSOME REARRANGEMENT; CONTROLLED STUDY; DNA REPLICATION; DROSOPHILA MELANOGASTER; ELECTRON MICROSCOPY; HETEROCHROMATIN; NONHUMAN; POLYTENE CHROMOSOME; PROTEIN BINDING; PROTEIN FUNCTION; PROTEIN LOCALIZATION;

ANIMALS; BASE SEQUENCE; BLOTTING, SOUTHERN; DNA BREAKS, DOUBLE-STRANDED; DNA REPLICATION; DNA-BINDING PROTEINS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; HETEROCHROMATIN; PHYSICAL CHROMOSOME MAPPING; PROTEIN TRANSPORT;

DROSOPHILA MELANOGASTER;

EID: 70450221521     PISSN: 00095915     EISSN: 14320886     Source Type: Journal    
DOI: 10.1007/s00412-009-0232-6     Document Type: Article

References (40)

1. MK Abbott JA Lengyel 1991 Embryonic head involution and rotation of male terminalia require the Drosophila locus head involution defective Genetics 129 783 789 1752422
2. EN Andreyeva ES Belyaeva VF Semeshin GV Pokholkova IF Zhimulev 2005 Three distinct chromatin domains in telomere ends of polytene chromosomes in Drosophila melanogaster Tel mutants J Cell Sci 118 5465 5477 10.1242/jcs.02654 16278293 (Pubitemid 43079288)
3. EN Andreyeva TD Kolesnikova OV Demakova M Mendez-Lago GV Pokholkova ES Belyaeva F Rossi P Dimitri A Villasante IF Zhimulev 2007 High-resolution analysis of Drosophila heterochromatin organization using SuUR Su(var)3-9 double mutants Proc Natl Acad Sci USA 104 12819 12824 10.1073/pnas.0704690104 17640911 (Pubitemid 47255238)
4. EN Andreyeva TD Kolesnikova ES Belyaeva RL Glaser IF Zhimulev 2008 Local DNA underreplication correlates with accumulation of phosphorylated H2Av in the Drosophila melanogaster polytene chromosomes Chromosome Res 16 851 862 10.1007/s10577-008-1244-4 18704724
5. Ashburner M, Golic KG, Hawley RS (2005) Drosophila. A laboratory handbook. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York
6. ES Belyaeva IF Zhimulev EI Volkova AA Alekseyenko YM Moshkin DE Koryakov 1998 Su(UR)ES: a gene suppressing DNA underreplication in intercalary and pericentric heterochromatin of Drosophila melanogaster polytene chromosomes Proc Natl Acad Sci USA 95 7532 7537 10.1073/pnas.95.13.7532 9636184 (Pubitemid 28293287)
7. ES Belyaeva LV Boldyreva EI Volkova RA Nanayev AA Alekseyenko IF Zhimulev 2003 Effect of the suppressor of underreplication (SuUR) gene on position-effect variegation silencing in Drosophila melanogaster Genetics 165 1209 1220 14668376
8. ES Belyaeva SA Demakov GV Pokholkova AA Alekseyenko TD Kolesnikova IF Zhimulev 2006 DNA underreplication in intercalary heterochromatin regions in polytene chromosomes of Drosophila melanogaster correlates with the formation of partial chromosomal aberrations and ectopic pairing Chromosoma 115 355 366 10.1007/s00412-006-0063-7 16583218 (Pubitemid 44288794)
9. ES Belyaeva EN Andreyeva SN Belyakin EI Volkova IF Zhimulev 2008 Intercalary heterochromatin in polytene chromosomes of Drosophila melanogaster Chromosoma 117 411 418 10.1007/s00412-008-0163-7 18491121
10. SN Belyakin GK Christophides AA Alekseyenko EV Kriventseva ES Belyaeva RA Nanayev IV Makunin FC Kafatos IF Zhimulev 2005 Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories Proc Natl Acad Sci USA 102 8269 8274 10.1073/pnas.0502702102 15928082 (Pubitemid 40800078)
11. CB Bridges 1935 Salivary chromosome maps with a key to the banding of the chromosomes of Drosophila melanogaster J Hered 26 60 64
12. CB Bridges 1938 A revised map of the salivary gland X-chromosome of Drosophila melanogaster J Hered 29 11 13
13. PN Bridges 1941 A revised map of the left limb of the third chromosome of Drosophila melanogaster J Hered 32 64 65
14. RA Drysdale MA Crosby 2005 FlyBase: genes and gene models Nucleic Acids Res 33 D390 D395 10.1093/nar/gki046 15608223 (Pubitemid 40207901)
15. RL Glaser AC Spradling 1994 Unusual properties of genomic DNA molecules spanning the euchromatic-heterochromatic junction of a Drosophila minichromosome Nucleic Acids Res 22 5068 5075 10.1093/nar/22.23.5068 7800501
16. GH Karpen AC Spradling 1990 Reduced DNA polytenization of a minichromosome region undergoing position-effect variegation in Drosophila Cell 63 97 107 10.1016/0092-8674(90)90291-L 2208283 (Pubitemid 20359508)
17. BP Kaufmann 1939 Distribution of induced breaks along the X-chromosome of Drosophila melanogaster Proc Natl Acad Sci USA 25 571 577 10.1073/pnas.25.11. 571 16577949
18. SC Lakhotia PK Tiwari 1984 Replication in Drosophila chromosomes. XI. Differences in temporal order of replication in two polytene cell types in Drosophila nasuta Chromosoma 89 212 217 10.1007/BF00295002
19. MM Lamb CD Laird 1987 Three euchromatic DNA sequences under-replicated in polytene chromosomes of Drosophila are localized in constrictions and ectopic fibers Chromosoma 95 227 235 10.1007/BF00294779 3113852
20. TJ Leach HL Chotkowski MG Wotring RL Dilwith RL Glaser 2000 Replication of heterochromatin and structure of polytene chromosomes Mol Cell Biol 20 6308 6316 10.1128/MCB.20.17.6308-6316.2000 10938107 (Pubitemid 30650217)
21. Lindsley DL, Zimm GG (1992) The genome of Drosophila melanogaster. Academic, San Diego, California
22. DM MacAlpine HK Rodriguez SP Bell 2004 Coordination of replication and transcription along a Drosophila chromosome Genes Dev 18 3094 3105 10.1101/gad.1246404 15601823 (Pubitemid 39658177)
23. JP Madigan HL Chotkowski RL Glaser 2002 DNA double-strand break-induced phosphorylation of Drosophila histone variant H2Av helps prevent radiation-induced apoptosis Nucleic Acids Res 30 3698 3705 10.1093/nar/gkf496 12202754
24. IV Makunin EI Volkova ES Belyaeva EN Nabirochkina V Pirrotta IF Zhimulev 2002 The Drosophila suppressor of underreplication protein binds to late-replicating regions of polytene chromosomes Genetics 160 1023 1034 11901119
25. AV Pindyurin C Moorman E de Wit SN Belyakin ES Belyaeva GK Christophides FC Kafatos B van Steensel IF Zhimulev 2007 SUUR joins separate subsets of PcG, HP1 and B-type lamin targets in Drosophila J Cell Sci 120 2344 2351 10.1242/jcs.006007 17606990 (Pubitemid 47225938)
26. AA Prokofyeva-Belgovskaya VV Khvostova 1939 Distribution of chromosome rearrangement breaks in Drosophila melanogaster X chromosome Dokl Akad Nauk SSSR 23 269 271
27. CP Redfern 1981 DNA replication in polytene chromosomes: similarity of termination patterns in somatic and germ-line derived polytene chromosomes of Anopheles stephensi Liston (Diptera: Culicidae) Chromosoma 84 33 47 10.1007/BF00293361 7297250 (Pubitemid 11024726)
28. E Ryder F Blows M Ashburner R Bautista-Llacer D Coulson J Drummond J Webster D Gubb N Gunton G Johnson CJ O'Kane D Huen P Sharma Z Asztalos H Baisch J Schulze M Kube K Kittlaus G Reuter P Maróy J Szidonya Rasmuson-Lestander K Ekström B Dickson C Hugentobler H Stocker E Hafen JA Lepesant G Pflugfelder M Heisenberg B Mechler F Serras M Corominas S Schneuwly T Preat J Roote S Russell 2004 The DrosDel collection: a set of P-element insertions for generating custom chromosomal aberrations in Drosophila melanogaster Genetics 167 797 813 10.1534/genetics.104.026658 15238529 (Pubitemid 38931865)
29. E Ryder M Ashburner R Bautista-Llacer J Drummond J Webster G Johnson T Morley YS Chan F Blows D Coulson G Reuter H Baisch C Apelt A Kauk T Rudolph M Kube M Klimm C Nickel J Szidonya P Maróy M Pal Rasmuson-Lestander K Ekström H Stocker C Hugentobler E Hafen D Gubb G Pflugfelder C Dorner B Mechler H Schenkel J Marhold F Serras M Corominas A Punset J Roote S Russell 2007 The DrosDel deletion collection: a Drosophila genomewide chromosomal deficiency resource Genetics 177 615 629 10.1534/genetics.107.076216 17720900 (Pubitemid 47555876)
30. M Schwaiger MB Stadler O Bell H Kohler EJ Oakeley D Schübeler 2009 Chromatin state marks cell-type- and gender-specific replication of the Drosophila genome Genes Dev 23 589 601 10.1101/gad.511809 19270159
31. VF Semeshin EM Baricheva ES Belyaeva IF Zhimulev 1985 Electron microscopical analysis of Drosophila polytene chromosomes. II. Development of complex puffs Chromosoma 91 210 233 10.1007/BF00328218 3920013 (Pubitemid 15106895)
32. F Semeshin S Belyaeva F Zhimulev 2001 Electron microscope mapping of the pericentric and intercalary heterochromatic regions of the polytene chromosomes of the mutant suppressor of underreplication in Drosophila melanogaster Chromosoma 110 487 500 10.1007/s004120100164 11862456 (Pubitemid 34007380)
33. VF Semeshin ES Belyaeva VV Shloma IF Zhimulev 2004 Electron microscopy of polytene chromosomes Methods Mol Biol 247 305 324 14707355
34. P Sinha A Mishra SC Lakhotia 1987 CChromosomal organization of Drosophila tumors. I. Polytene chromosome organization and DNA synthesis in ovarian pseudonurse cells in otu mutants of D. melanogaster Chromosoma 95 108 116 10.1007/BF00332183 (Pubitemid 17079288)
35. PK Tiwari SC Lakhotia 1984 Replication in Drosophila chromosomes. XIII. Comparison of late replicating sites in two polytene cell types in D. hydei Genetica 65 227 234 10.1007/BF00122909 (Pubitemid 15172017)
36. JP Wing JS Karres JL Ogdahl L Zhou LM Schwartz JR Nambu 2002 Drosophila sickle is a novel grim-reaper cell death activator Curr Biol 12 131 135 10.1016/S0960-9822(01)00664-9 11818064 (Pubitemid 34099137)
37. IF Zhimulev 1998 Polytene chromosomes, heterochromatin, and position effect variegation Adv Genet 37 1 566 10.1016/S0065-2660(08)60341-7 9352629
38. IF Zhimulev VF Semeshin VA Kulichkov ES Belyaeva 1982 Intercalary heterochromatin in Drosophila. I Localization and general characteristics Chromosoma 87 197 228 10.1007/BF00338489
39. IF Zhimulev ES Belyaeva IV Makunin V Pirrotta EI Volkova AA Alekseyenko EN Andreyeva GF Makarevich LV Boldyreva RA Nanayev OV Demakova 2003 Influence of the SuUR gene on intercalary heterochromatin in Drosophila melanogaster polytene chromosomes Chromosoma 111 377 398 10.1007/s00412-002-0218-0 12644953 (Pubitemid 36422681)
40. IF Zhimulev ES Belyaeva VF Semeshin VV Shloma IV Makunin EI Volkova 2003 Overexpression of the SuUR gene induces reversible modifications at pericentric, telomeric and intercalary heterochromatin of Drosophila melanogaster polytene chromosomes J Cell Sci 116 169 176 10.1242/jcs.00196 12456726 (Pubitemid 36113975)