-
1
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
Adams, P. D., R. W. Grosse-Kunstleve, L. W. Hung, T. R. Ioerger, A. J. McCoy, N. W. Moriarty, R. J. Read, J. C. Sacchettini, N. K. Sauter, and T. C. Terwilliger. 2002. PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr. D 58:1948-1954.
-
(2002)
Acta Crystallogr. D
, vol.58
, pp. 1948-1954
-
-
Adams, P.D.1
Grosse-Kunstleve, R.W.2
Hung, L.W.3
Ioerger, T.R.4
McCoy, A.J.5
Moriarty, N.W.6
Read, R.J.7
Sacchettini, J.C.8
Sauter, N.K.9
Terwilliger, T.C.10
-
2
-
-
33646167477
-
Crystal structure of the cytomegalovirus DNA polymerase subunit UL44 in complex with the C terminus from the catalytic subunit. Differences in structure and function relative to unliganded UL44
-
Appleton, B. A., J. Brooks, A. Loregian, D. J. Filman, D. M. Coen, and J. M. Hogle. 2006. Crystal structure of the cytomegalovirus DNA polymerase subunit UL44 in complex with the C terminus from the catalytic subunit. Differences in structure and function relative to unliganded UL44. J. Biol. Chem. 281:5224-5232.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 5224-5232
-
-
Appleton, B.A.1
Brooks, J.2
Loregian, A.3
Filman, D.J.4
Coen, D.M.5
Hogle, J.M.6
-
3
-
-
3242688965
-
The cytomegalovirus DNA polymerase subunit UL44 forms a C clamp-shaped dimer
-
Appleton, B. A., A. Loregian, D. J. Filman, D. M. Coen, and J. M. Hogle. 2004. The cytomegalovirus DNA polymerase subunit UL44 forms a C clamp-shaped dimer. Mol. Cell 15:233-244.
-
(2004)
Mol. Cell
, vol.15
, pp. 233-244
-
-
Appleton, B.A.1
Loregian, A.2
Filman, D.J.3
Coen, D.M.4
Hogle, J.M.5
-
4
-
-
1242328736
-
Amplification of the Kaposi's sarcoma-associated herpesvirus/human herpesvirus 8 lytic origin of DNA replication is dependent upon a cis-acting AT-rich region and an ORF50 response element and the trans-acting factors ORF50 (K-Rta) and K8 (K-bZIP)
-
AuCoin, D. P., K. S. Colletti, S. A. Cei, I. Papouskova, M. Tarrant, and G. S. Pari. 2004. Amplification of the Kaposi's sarcoma-associated herpesvirus/human herpesvirus 8 lytic origin of DNA replication is dependent upon a cis-acting AT-rich region and an ORF50 response element and the trans-acting factors ORF50 (K-Rta) and K8 (K-bZIP). Virology 318:542-555.
-
(2004)
Virology
, vol.318
, pp. 542-555
-
-
Aucoin, D.P.1
Colletti, K.S.2
Cei, S.A.3
Papouskova, I.4
Tarrant, M.5
Pari, G.S.6
-
5
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
Baker, N. A., D. Sept, S. Joseph, M. J. Holst, and J. A. McCammon. 2001. Electrostatics of nanosystems: application to microtubules and the ribosome. Proc. Natl. Acad. Sci. USA 98:10037-10041.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
6
-
-
0035038393
-
Identification of crucial hydrogen-bonding residues for the interaction of herpes simplex virus DNA polymerase subunits via peptide display, mutational, and calorimetric approaches
-
Bridges, K. G., C. S. Chow, and D. M. Coen. 2001. Identification of crucial hydrogen-bonding residues for the interaction of herpes simplex virus DNA polymerase subunits via peptide display, mutational, and calorimetric approaches. J. Virol. 75:4990-4998.
-
(2001)
J. Virol.
, vol.75
, pp. 4990-4998
-
-
Bridges, K.G.1
Chow, C.S.2
Coen, D.M.3
-
7
-
-
0032484487
-
Identification and characterization of human herpesvirus-8 lytic cycle-associated ORF 59 protein and the encoding cDNA by monoclonal antibody
-
Chan, S. R., C. Bloomer, and B. Chandran. 1998. Identification and characterization of human herpesvirus-8 lytic cycle-associated ORF 59 protein and the encoding cDNA by monoclonal antibody. Virology 240:118-126.
-
(1998)
Virology
, vol.240
, pp. 118-126
-
-
Chan, S.R.1
Bloomer, C.2
Chandran, B.3
-
8
-
-
0034469501
-
Characterization of human herpesvirus 8 ORF59 protein (PF-8) and mapping of the processivity and viral DNA polymerase-interacting domains
-
Chan, S. R., and B. Chandran. 2000. Characterization of human herpesvirus 8 ORF59 protein (PF-8) and mapping of the processivity and viral DNA polymerase-interacting domains. J. Virol. 74:10920-10929.
-
(2000)
J. Virol.
, vol.74
, pp. 10920-10929
-
-
Chan, S.R.1
Chandran, B.2
-
9
-
-
3142544271
-
Human Kaposi's sarcoma herpesvirus processivity factor-8 functions as a dimer in DNA synthesis
-
Chen, X., K. Lin, and R. P. Ricciardi. 2004. Human Kaposi's sarcoma herpesvirus processivity factor-8 functions as a dimer in DNA synthesis. J. Biol. Chem. 279:28375-28386.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 28375-28386
-
-
Chen, X.1
Lin, K.2
Ricciardi, R.P.3
-
10
-
-
0024793120
-
Herpes simplex-1 DNA polymerase. Identification of an intrinsic 5′-3′ exonuclease with ribonuclease H activity
-
Crute, J. J., and I. R. Lehman. 1989. Herpes simplex-1 DNA polymerase. Identification of an intrinsic 5′-3′ exonuclease with ribonuclease H activity. J. Biol. Chem. 264:19266-19270.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 19266-19270
-
-
Crute, J.J.1
Lehman, I.R.2
-
12
-
-
0030931534
-
Structure of the inhibitory receptor for human natural killer cells resembles haematopoietic receptors
-
DOI 10.1038/38028
-
Fan, Q. R., L. Mosyak, C. C. Winter, N. Wagtmann, E. O. Long, and D. C. Wiley. 1997. Structure of the inhibitory receptor for human natural killer cells resembles haematopoietic receptors. Nature 389:96-100. (Pubitemid 27387699)
-
(1997)
Nature
, vol.389
, Issue.6646
, pp. 96-100
-
-
Fan, Q.R.1
Mosyak, L.2
Winter, C.C.3
Wagtmannt, N.4
Long, E.O.5
Wiley, D.C.6
-
13
-
-
0035369086
-
Structure of the replicating complex of a pol alpha family DNA polymerase
-
DOI 10.1016/S0092-8674(01)00367-1
-
Franklin, M. C., J. Wang, and T. A. Steitz. 2001. Structure of the replicating complex of a pol alpha family DNA polymerase. Cell 105:657-667. (Pubitemid 32524118)
-
(2001)
Cell
, vol.105
, Issue.5
, pp. 657-667
-
-
Franklin, M.C.1
Wang, J.2
Steitz, T.A.3
-
14
-
-
0023762811
-
Purification of the herpes simplex virus type 1 65-kilodalton DNA-binding protein: Properties of the protein and evidence of its association with the virus-encoded DNA polymerase
-
Gallo, M. L., D. H. Jackwood, M. Murphy, H. S. Marsden, and D. S. Parris. 1988. Purification of the herpes simplex virus type 1 65-kilodalton DNA-binding protein: properties of the protein and evidence of its association with the virus-encoded DNA polymerase. J. Virol. 62:2874-2883.
-
(1988)
J. Virol.
, vol.62
, pp. 2874-2883
-
-
Gallo, M.L.1
Jackwood, D.H.2
Murphy, M.3
Marsden, H.S.4
Parris, D.S.5
-
15
-
-
37649016453
-
Structure of a sliding clamp on DNA
-
Georgescu, R. E., S. S. Kim, O. Yurieva, J. Kuriyan, X. P. Kong, and M. O'Donnell. 2008. Structure of a sliding clamp on DNA. Cell 132:43-54.
-
(2008)
Cell
, vol.132
, pp. 43-54
-
-
Georgescu, R.E.1
Kim, S.S.2
Yurieva, O.3
Kuriyan, J.4
Kong, X.P.5
O'Donnell, M.6
-
16
-
-
0025253822
-
The herpes simplex virus type 1 UL42 gene product: A subunit of DNA polymerase that functions to increase processivity
-
Gottlieb, J., A. I. Marcy, D. M. Coen, and M. D. Challberg. 1990. The herpes simplex virus type 1 UL42 gene product: a subunit of DNA polymerase that functions to increase processivity. J. Virol. 64:5976-5987.
-
(1990)
J. Virol.
, vol.64
, pp. 5976-5987
-
-
Gottlieb, J.1
Marcy, A.I.2
Coen, D.M.3
Challberg, M.D.4
-
17
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
DOI 10.1002/elps.1150181505
-
Guex, N., and M. C. Peitsch. 1997. SWISS-MODEL and the Swiss-Pdb-Viewer: an environment for comparative protein modeling. Electrophoresis 18:2714-2723. (Pubitemid 28059943)
-
(1997)
Electrophoresis
, vol.18
, Issue.15
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
18
-
-
0030592544
-
Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA
-
Gulbis, J. M., Z. Kelman, J. Hurwitz, M. O'Donnell, and J. Kuriyan. 1996. Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA. Cell 87:297-306.
-
(1996)
Cell
, vol.87
, pp. 297-306
-
-
Gulbis, J.M.1
Kelman, Z.2
Hurwitz, J.3
O'Donnell, M.4
Kuriyan, J.5
-
19
-
-
56649103902
-
Searching protein structure databases with DaliLite v. 3
-
Holm, L., S. Kaariainen, P. Rosenstrom, and A. Schenkel. 2008. Searching protein structure databases with DaliLite v. 3. Bioinformatics 24:2780-2781.
-
(2008)
Bioinformatics
, vol.24
, pp. 2780-2781
-
-
Holm, L.1
Kaariainen, S.2
Rosenstrom, P.3
Schenkel, A.4
-
20
-
-
0033824470
-
DaliLite workbench for protein structure comparison
-
Holm, L., and J. Park. 2000. DaliLite workbench for protein structure comparison. Bioinformatics 6:566-567.
-
(2000)
Bioinformatics
, vol.6
, pp. 566-567
-
-
Holm, L.1
Park, J.2
-
21
-
-
0026519753
-
Parallelization of a local similarity algorithm
-
Huang, X., W. Miller, S. Schwartz, and R. C. Hardison. 1992. Parallelization of a local similarity algorithm. Comput. Appl. Biosci. 8:155-165.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 155-165
-
-
Huang, X.1
Miller, W.2
Schwartz, S.3
Hardison, R.C.4
-
22
-
-
58149352656
-
Lys-110 is essential for targeting PCNA to replication and repair foci, and the K110A mutant activates apoptosis
-
Kim, B. J., and H. Lee. 2008. Lys-110 is essential for targeting PCNA to replication and repair foci, and the K110A mutant activates apoptosis. Biol. Cell 100:675-686.
-
(2008)
Biol. Cell
, vol.100
, pp. 675-686
-
-
Kim, B.J.1
Lee, H.2
-
23
-
-
49449110684
-
Hopping of a processivity factor on DNA revealed by single-molecule assays of diffusion
-
Komazin-Meredith, G., R. Mirchev, D. E. Golan, A. M. van Oijen, and D. M. Coen. 2008. Hopping of a processivity factor on DNA revealed by single-molecule assays of diffusion. Proc. Natl. Acad. Sci. USA 105:10721-10726.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 10721-10726
-
-
Komazin-Meredith, G.1
Mirchev, R.2
Golan, D.E.3
Van Oijen, A.M.4
Coen, D.M.5
-
24
-
-
48149094044
-
The human cytomegalovirus UL44 C clamp wraps around DNA
-
Komazin-Meredith, G., R. J. Petrella, W. L. Santos, D. J. Filman, J. M. Hogle, G. L. Verdine, M. Karplus, and D. M. Coen. 2008. The human cytomegalovirus UL44 C clamp wraps around DNA. Structure 16:1214-1225.
-
(2008)
Structure
, vol.16
, pp. 1214-1225
-
-
Komazin-Meredith, G.1
Petrella, R.J.2
Santos, W.L.3
Filman, D.J.4
Hogle, J.M.5
Verdine, G.L.6
Karplus, M.7
Coen, D.M.8
-
25
-
-
44449133285
-
The positively charged surface of herpes simplex virus UL42 mediates DNA binding
-
Komazin-Meredith, G., W. L. Santos, D. J. Filman, J. M. Hogle, G. L. Verdine, and D. M. Coen. 2008. The positively charged surface of herpes simplex virus UL42 mediates DNA binding. J. Biol. Chem. 283:6154-6161.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 6154-6161
-
-
Komazin-Meredith, G.1
Santos, W.L.2
Filman, D.J.3
Hogle, J.M.4
Verdine, G.L.5
Coen, D.M.6
-
26
-
-
0026717535
-
Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: A sliding DNA clamp
-
Kong, X. P., R. Onrust, M. O'Donnell, and J. Kuriyan. 1992. Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell 69:425-437.
-
(1992)
Cell
, vol.69
, pp. 425-437
-
-
Kong, X.P.1
Onrust, R.2
O'Donnell, M.3
Kuriyan, J.4
-
27
-
-
0028618183
-
Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA
-
Krishna, T. S., X. P. Kong, S. Gary, P. M. Burgers, and J. Kuriyan. 1994. Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA. Cell 79:1233-1243.
-
(1994)
Cell
, vol.79
, pp. 1233-1243
-
-
Krishna, T.S.1
Kong, X.P.2
Gary, S.3
Burgers, P.M.4
Kuriyan, J.5
-
28
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
DOI 10.1107/S0907444904026460
-
Krissinel, E., and K. Henrick. 2004. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D 60:2256-2268. (Pubitemid 41742778)
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, Issue.12 I
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
29
-
-
0031776461
-
Cloning and functional analysis of Kaposi's sarcoma-associated herpesvirus DNA polymerase and its processivity factor
-
Lin, K., C. Y. Dai, and R. P. Ricciardi. 1998. Cloning and functional analysis of Kaposi's sarcoma-associated herpesvirus DNA polymerase and its processivity factor. J. Virol. 72:6228-6232. (Pubitemid 28283421)
-
(1998)
Journal of Virology
, vol.72
, Issue.7
, pp. 6228-6232
-
-
Lin, K.1
Dai, C.Y.2
Ricciardi, R.P.3
-
30
-
-
0033848153
-
A rapid plate assay for the screening of inhibitors against herpesvirus DNA polymerases and processivity factors
-
DOI 10.1016/S0166-0934(00)00190-7, PII S0166093400001907
-
Lin, K., and R. P. Ricciardi. 2000. A rapid plate assay for the screening of inhibitors against herpesvirus DNA polymerases and processivity factors. J. Virol. Methods 88:219-225. (Pubitemid 30674132)
-
(2000)
Journal of Virological Methods
, vol.88
, Issue.2
, pp. 219-225
-
-
Lin, K.1
Ricciardi, R.P.2
-
31
-
-
33745841864
-
Crystal structure of the herpes simplex virus 1 DNA polymerase
-
Liu, S., J. D. Knafels, J. S. Chang, G. A. Waszak, E. T. Baldwin, M. R. Deibel, Jr., D. R. Thomsen, F. L. Homa, P. A. Wells, M. C. Tory, R. A. Poorman, H. Gao, X. Qiu, and A. P. Seddon. 2006. Crystal structure of the herpes simplex virus 1 DNA polymerase. J. Biol. Chem. 281:18193-18200.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 18193-18200
-
-
Liu, S.1
Knafels, J.D.2
Chang, J.S.3
Waszak, G.A.4
Baldwin, E.T.5
Deibel Jr., M.R.6
Thomsen, D.R.7
Homa, F.L.8
Wells, P.A.9
Tory, M.C.10
Poorman, R.A.11
Gao, H.12
Qiu, X.13
Seddon, A.P.14
-
32
-
-
0347626042
-
Residues of Human Cytomegalovirus DNA Polymerase Catalytic Subunit UL54 That Are Necessary and Sufficient for Interaction with the Accessory Protein UL44
-
DOI 10.1128/JVI.78.1.158-167.2004
-
Loregian, A., B. A. Appleton, J. M. Hogle, and D. M. Coen. 2004. Residues of human cytomegalovirus DNA polymerase catalytic subunit UL54 that are necessary and sufficient for interaction with the accessory protein UL44. J. Virol. 78:158-167. (Pubitemid 37549728)
-
(2004)
Journal of Virology
, vol.78
, Issue.1
, pp. 158-167
-
-
Loregian, A.1
Appleton, B.A.2
Hogle, J.M.3
Coen, D.M.4
-
33
-
-
3242681272
-
Specific residues in the connector loop of the human cytomegalovirus DNA polymerase accessory protein UL44 are crucial for interaction with the UL54 catalytic subunit
-
DOI 10.1128/JVI.78.17.9084-9092.2004
-
Loregian, A., B. A. Appleton, J. M. Hogle, and D. M. Coen. 2004. Specific residues in the connector loop of the human cytomegalovirus DNA polymerase accessory protein UL44 are crucial for interaction with the UL54 catalytic subunit. J. Virol. 78:9084-9092. (Pubitemid 39096519)
-
(2004)
Journal of Virology
, vol.78
, Issue.17
, pp. 9084-9092
-
-
Loregian, A.1
Appleton, B.A.2
Hogle, J.M.3
Coen, D.M.4
-
34
-
-
0037770337
-
Inhibition of human cytomegalovirus DNA polymerase by C-terminal peptides from the UL54 subunit
-
DOI 10.1128/JVI.77.15.8336-8344.2003
-
Loregian, A., R. Rigatti, M. Murphy, E. Schievano, G. Palu, and H. S. Marsden. 2003. Inhibition of human cytomegalovirus DNA polymerase by C-terminal peptides from the UL54 subunit. J. Virol. 77:8336-8344. (Pubitemid 36871462)
-
(2003)
Journal of Virology
, vol.77
, Issue.15
, pp. 8336-8344
-
-
Loregian, A.1
Rigatti, R.2
Murphy, M.3
Schievano, E.4
Palu, G.5
Marsden, H.S.6
-
35
-
-
34547891497
-
Binding parameters and thermodynamics of the interaction of the human cytomegalovirus DNA polymerase accessory protein, UL44, with DNA: Implications for the processivity mechanism
-
DOI 10.1093/nar/gkm506
-
Loregian, A., E. Sinigalia, B. Mercorelli, G. Palu, and D. M. Coen. 2007. Binding parameters and thermodynamics of the interaction of the human cytomegalovirus DNA polymerase accessory protein, UL44, with DNA: implications for the processivity mechanism. Nucleic Acids Res. 35:4779-4791. (Pubitemid 47250349)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.14
, pp. 4779-4791
-
-
Loregian, A.1
Sinigalia, E.2
Mercorelli, B.3
Palu, G.4
Coen, D.M.5
-
36
-
-
4644264523
-
The Epstein-Barr virus polymerase accessory factor BMRF1 adopts a ring-shaped structure as visualized by electron microscopy
-
Makhov, A. M., D. Subramanian, E. Holley-Guthrie, S. C. Kenney, and J. D. Griffith. 2004. The Epstein-Barr virus polymerase accessory factor BMRF1 adopts a ring-shaped structure as visualized by electron microscopy. J. Biol. Chem. 279:40358-40361.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 40358-40361
-
-
Makhov, A.M.1
Subramanian, D.2
Holley-Guthrie, E.3
Kenney, S.C.4
Griffith, J.D.5
-
37
-
-
0035107856
-
Crystal structure of an archaeal dna sliding clamp: Proliferating cell nuclear antigen from pyrococcus furiosus
-
DOI 10.1110/ps.36401
-
Matsumiya, S., Y. Ishino, and K. Morikawa. 2001. Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus. Protein Sci. 10:17-23. (Pubitemid 32221160)
-
(2001)
Protein Science
, vol.10
, Issue.1
, pp. 17-23
-
-
Matsumiya, S.1
Ishino, Y.2
Morikawa, K.3
-
38
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin, L. J., K. Bryson, and D. T. Jones. 2000. The PSIPRED protein structure prediction server. Bioinformatics 16:404-405. (Pubitemid 30417087)
-
(2000)
Bioinformatics
, vol.16
, Issue.4
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
39
-
-
0035889689
-
Linear programming optimization and a double statistical filter for protein threading protocols
-
Meller, J., and R. Elber. 2001. Linear programming optimization and a double statistical filter for protein threading protocols. Proteins 45:241-261.
-
(2001)
Proteins
, vol.45
, pp. 241-261
-
-
Meller, J.1
Elber, R.2
-
40
-
-
34249066085
-
PCNA, the maestro of the replication fork
-
Moldovan, G. L., B. Pfander, and S. Jentsch. 2007. PCNA, the maestro of the replication fork. Cell 129:665-679.
-
(2007)
Cell
, vol.129
, pp. 665-679
-
-
Moldovan, G.L.1
Pfander, B.2
Jentsch, S.3
-
41
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., A. A. Vagin, and E. J. Dodson. 1997. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D 53:240-255.
-
(1997)
Acta Crystallogr. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
42
-
-
17144365007
-
Proliferating cell nuclear antigen (PCNA) may function as a double homotrimer complex in the mammalian cell
-
Naryzhny, S. N., H. Zhao, and H. Lee. 2005. Proliferating cell nuclear antigen (PCNA) may function as a double homotrimer complex in the mammalian cell. J. Biol. Chem. 280:13888-13894.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 13888-13894
-
-
Naryzhny, S.N.1
Zhao, H.2
Lee, H.3
-
43
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski, Z., and W. Minor. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
44
-
-
0023831378
-
Identification of the gene encoding the 65-kilodalton DNA-binding protein of herpes simplex virus type 1
-
Parris, D. S., A. Cross, L. Haarr, A. Orr, M. C. Frame, M. Murphy, D. J. McGeoch, and H. S. Marsden. 1988. Identification of the gene encoding the 65-kilodalton DNA-binding protein of herpes simplex virus type 1. J. Virol. 62:818-825. (Pubitemid 18068638)
-
(1988)
Journal of Virology
, vol.62
, Issue.3
, pp. 818-825
-
-
Parris, D.S.1
Cross, A.2
Haarr, L.3
Orr, A.4
Frame, M.C.5
Murphy, M.6
McGeoch, D.J.7
Marsden, H.S.8
-
45
-
-
36349022047
-
The family Herpesviridae: A brief introduction
-
D. M. Knipe, and P. M. Howley (ed.), 5th ed. Lippincott Williams & Wilkins, Philadelphia, PA
-
Pellet, P. E., and B. Roizman. 2007. The family Herpesviridae: a brief introduction, p. 2479-2499. In D. M. Knipe, and P. M. Howley (ed.), Fields virology, 5th ed. Lippincott Williams & Wilkins, Philadelphia, PA.
-
(2007)
Fields Virology
, pp. 2479-2499
-
-
Pellet, P.E.1
Roizman, B.2
-
46
-
-
0347627532
-
The herpes simplex virus processivity factor, UL42, binds DNA as a monomer
-
Randell, J. C., and D. M. Coen. 2004. The herpes simplex virus processivity factor, UL42, binds DNA as a monomer. J. Mol. Biol. 335:409-413.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 409-413
-
-
Randell, J.C.1
Coen, D.M.2
-
47
-
-
0032962457
-
Twilight zone of protein sequence alignments
-
Rost, B. 1999. Twilight zone of protein sequence alignments. Protein Eng. 12:85-94. (Pubitemid 29103686)
-
(1999)
Protein Engineering
, vol.12
, Issue.2
, pp. 85-94
-
-
Rost, B.1
-
48
-
-
0029166033
-
Kaposi's sarcoma-associated herpesvirus-like DNA sequences in multicentric Castleman's disease
-
Soulier, J., L. Grollet, E. Oksenhendler, P. Cacoub, D. Cazals-Hatem, P. Babinet, M. F. d'Agay, J. P. Clauvel, M. Raphael, L. Degos, and F. Sigaux. 1995. Kaposi's sarcoma-associated herpesvirus-like DNA sequences in multicentric Castleman's disease. Blood 86:1276-1280.
-
(1995)
Blood
, vol.86
, pp. 1276-1280
-
-
Soulier, J.1
Grollet, L.2
Oksenhendler, E.3
Cacoub, P.4
Cazals-Hatem, D.5
Babinet, P.6
D'Agay, M.F.7
Clauvel, J.P.8
Raphael, M.9
Degos, L.10
Sigaux, F.11
-
50
-
-
0025809742
-
Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme
-
Stukenberg, P. T., P. S. Studwell-Vaughan, and M. O'Donnell. 1991. Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme. J. Biol. Chem. 266:11328-11334.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 11328-11334
-
-
Stukenberg, P.T.1
Studwell-Vaughan, P.S.2
O'Donnell, M.3
-
51
-
-
0348047626
-
Enriching the sequence substitution matrix by structural information
-
Teodorescu, O., T. Galor, J. Pillardy, and R. Elber. 2004. Enriching the sequence substitution matrix by structural information. Proteins 54:41-48.
-
(2004)
Proteins
, vol.54
, pp. 41-48
-
-
Teodorescu, O.1
Galor, T.2
Pillardy, J.3
Elber, R.4
-
52
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
53
-
-
0034734837
-
Analysis of in vitro activities of herpes simplex virus type 1 UL42 mutant proteins: Correlation with in vivo function
-
Thornton, K. E., M. Chaudhuri, S. J. Monahan, L. A. Grinstead, and D. S. Parris. 2000. Analysis of in vitro activities of herpes simplex virus type 1 UL42 mutant proteins: correlation with in vivo function. Virology 275:373-390.
-
(2000)
Virology
, vol.275
, pp. 373-390
-
-
Thornton, K.E.1
Chaudhuri, M.2
Monahan, S.J.3
Grinstead, L.A.4
Parris, D.S.5
-
54
-
-
0034308163
-
Distance-dependent, pair potential for protein folding: Results from linear optimization
-
Tobi, D., and R. Elber. 2000. Distance-dependent, pair potential for protein folding: results from linear optimization. Proteins 41:40-46.
-
(2000)
Proteins
, vol.41
, pp. 40-46
-
-
Tobi, D.1
Elber, R.2
-
55
-
-
0027448643
-
Functional interaction between Epstein-Barr virus DNA polymerase catalytic subunit and its accessory subunit in vitro
-
Tsurumi, T., T. Daikoku, R. Kurachi, and Y. Nishiyama. 1993. Functional interaction between Epstein-Barr virus DNA polymerase catalytic subunit and its accessory subunit in vitro. J. Virol. 67:7648-7653. (Pubitemid 23343898)
-
(1993)
Journal of Virology
, vol.67
, Issue.12
, pp. 7648-7653
-
-
Tsurumi, T.1
Daikoku, T.2
Kurachi, R.3
Nishiyama, Y.4
-
56
-
-
0032888971
-
Herpes simplex virus processivity factor UL42 imparts increased DNA- Binding specificity to the viral DNA polymerase and decreased dissociation from primer-template without reducing the elongation rate
-
Weisshart, K., C. S. Chow, and D. M. Coen. 1999. Herpes simplex virus processivity factor UL42 imparts increased DNA-binding specificity to the viral DNA polymerase and decreased dissociation from primer-template without reducing the elongation rate. J. Virol. 73:55-66. (Pubitemid 28565346)
-
(1999)
Journal of Virology
, vol.73
, Issue.1
, pp. 55-66
-
-
Weisshart, K.1
Chow, C.S.2
Coen, D.M.3
-
57
-
-
0035152285
-
Origin-independent assembly of Kaposi's sarcoma-associated herpesvirus DNA replication compartments in transient cotransfection assays and association with the ORF-K8 protein and cellular PML
-
Wu, F. Y., J. H. Ahn, D. J. Alcendor, W. J. Jang, J. Xiao, S. D. Hayward, and G. S. Hayward. 2001. Origin-independent assembly of Kaposi's sarcoma-associated herpesvirus DNA replication compartments in transient cotransfection assays and association with the ORF-K8 protein and cellular PML. J. Virol. 75:1487-1506.
-
(2001)
J. Virol.
, vol.75
, pp. 1487-1506
-
-
Wu, F.Y.1
Ahn, J.H.2
Alcendor, D.J.3
Jang, W.J.4
Xiao, J.5
Hayward, S.D.6
Hayward, G.S.7
-
58
-
-
0033867542
-
The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase
-
Zuccola, H. J., D. J. Filman, D. M. Coen, and J. M. Hogle. 2000. The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase. Mol. Cell 5:267-278.
-
(2000)
Mol. Cell
, vol.5
, pp. 267-278
-
-
Zuccola, H.J.1
Filman, D.J.2
Coen, D.M.3
Hogle, J.M.4
|