An advanced laser-based fluorescence microstructure profiler (TurboMAP-L) for measuring bio-physical coupling in aquatic systems

Journal of Plankton Research

Volumn 31, Issue 12, 2009, Pages 1441-1452

  Doubell, Mark J ^a   Yamazaki, Hidekatsu ^a   Li, Hua ^b   Kokubu, Yusaku ^a  

^a TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

^b Alec Electronics Co Ltd   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AQUATIC ENVIRONMENT; CHLOROPHYLL; COASTAL WATER; FLUORESCENCE; PARTICULATE MATTER; PHYTOPLANKTON; PROFILER; SENSOR; TURBULENCE;

ASIA; EURASIA; FAR EAST; HONSHU; JAPAN; KANTO; TOKYO [KANTO]; TOKYO [TOKYO (PRF)];

EID: 70449637698     PISSN: 01427873     EISSN: 14643774     Source Type: Journal    
DOI: 10.1093/plankt/fbp092     Document Type: Article

References (36)

1. Alldredge, A. L., Cowles, T. J., MacIntyre, S. et al. (2002) Occurrence and mechanisms of formation of a dramatic thin layer of marine snow in a shallow Pacific fjord. Mar. Ecol. Prog. Ser., 233, 1-12.
2. Berdalet, E. (1992) Effects of turbulence on the marine dinoflagellate Gymnodinium nelsonii. J. Phycol., 28, 267-272.
3. Davis, C. S., Thwaites, F. T., Gallager, S. M. et al. (2005) A three-axis fast-tow digital video plankton recorder for rapid surveys of plankton taxa and hydrography. Limnol. Oceanogr.: Methods, 3, 59-74.
4. Denman, K. L. and Gargett, A. E. (1995) Biological-physical interactions in the upper ocean: the role of vertical and small scale transport processes. Annu. Rev. Fluid Mech., 27, 225-255.
5. Desiderio, R. A., Moore, C., Lantz, C. et al. (1993) Multiple excitation fluorometer for in situ oceanographic applications. Appl. Optics., 36, 1289-1296.
6. Doubell, M. J., Seuront, L., Seymour, J. R. et al. (2006) High-resolution fluorometer for mapping microscale phytoplankton distributions. Appl. Environ. Microbiol., 72, 4475-4478.
7. Franks, P. J. S. (2005) Plankton patchiness, turbulent transport and spatial spectra. Mar. Ecol. Prog. Ser., 294, 295-309.
8. Franks, P. J. S. and Jaffe, J. S. (2001) Microscale distributions of phytoplankton: initial results from a two-dimensional imaging fluorometer. Mar. Ecol. Prog. Ser, 220, 59-72.
9. Franks, P. J. S. and Jaffe, J. S. (2008) Microscale variability in the distributions of large fluorescent particles observed in situ with a planar laser imaging fluorometer. J. Mar. Syst., 69, 254-270.
10. Gregg, M. C. (1999) Uncertainties and limitations in measuring e and T x. J. Atmos. Ocean Tech., 16, 1483-1490.
11. Jackson, G. A., Logen, B. E., Alldredge, A. L. et al. (1995) Combining particle size spectra from a mecocosm experiment measured using photographic and aperture impedance (Coulter and Elzone) techniques. Deep-Sea Res. II, 42, 139-157.
12. Kanda, J., Fujiwara, S., Kitazato, H. et al. (2003) Seasonal and annual variation in the primary production regime in the central part of Sagami Bay. Prog. Oceanogr., 57, 17-29.
13. Katz, J., Donaghay, P., Zhang, J., King, S. and Russell, K. (1999) Submersible holocamera for detection of particle characteristics and motions in the ocean. Deep-Sea Res. I-Oceanogr. Res. Pap., 46, 1455-1481.
14. Karp-Boss, L., Boss, E. and Jumars, P. A. (1996) Nutrient fluxes to planktonic osmotrophs in the presence of fluid motion. Oceanogr. Mar. Biol. Annu. Rev., 34, 71-107.
15. Kiørboe, T. (2001) Formation and fate of marine snow: small-scale processes with large-scale implications. Sci. Mar., 65, 57-71.
16. Kiørboe, T. and Hansen, J. L. S. (1993) Phytoplankton aggregate formation: observations of patterns and mechanisms of cell sticking and the significance of exopolymeric material. J. Plankton Res., 15, 993-1018.
17. Kiørboe, T. and Saiz, E. (1995) Planktivorous feeding in calm and turbulent environments, with emphasis on copepods. Mar. Ecol. Prog. Ser., 122, 135-145.
18. Kiørboe, T., Tiselius, P., Mitchell-Innes, B. et al. (1998) Intensive aggregate formation with low vertical flux during an upwelling-induced diatom bloom. Limnol. Oceanogr., 43, 104-116.
19. Lorenzen, C. J. (1966) A method for the continuous measurement of in-vivo chlorophyll concentration. Deep-Sea Res., 13, 223-227.
20. MacIntyre, S., Alldredge, A. L. and Gotschalk, C. C. (1995) Accumulation of marine snow at density discontinuities in the water column. Limnol. Oceanogr., 40, 449-468.
21. McCave, I. N. (1984) Size spectra and aggregation of suspended particles in the deep ocean. Deep-Sea Res., 31, 329-352.
22. McManus, M. A., Alldredge, A. L., Barnard, A. H. et al. (2003) Characteristic distribution and persistence of thin layers over a 48 hour period. Mar. Ecol. Prog. Ser., 261, 1-19.
23. Mitchell, J. G., Yamazaki, H., Seuront, L. et al. (2008) Phytoplankton patch patterns: seascape anatomy in a turbulent ocean. J. Mar. Syst., 69, 247-253.
24. Nakane, T., Nakaka, K., Bouman, H. et al. (2008) Environmental control of short-term variation in the plankton community of inner Tokyo Bay, Japan. Estuar. Coast. Shelf Sci., 78, 796-810.
25. Otani, S., Naito, Y., Kawamura, A. et al. (1998) Diving behavior and performance of harbour porpoises, Phocoena phocoena, in Funka Bay, Hokkaido, Japan. Mar. Mammal Sci., 14, 209-220.
26. Siegel, D. A. (1998) Resource competition in a discrete environment: why are plankton distributions paradoxical? Limnol. Oceanogr., 43, 1133-1146.
27. Smetacek, V. and Cloern, J. E. (2008) On phytoplankton trends. Science, 319, 1346-1348.
28. Steele, J. H. (1989) The ocean 'landscape'. Landsc. Ecol., 3, 185-192.
29. Tiselius, P. and Kuylenstierna, M. (1996) Growth and decline of a diatom spring bloom: phytoplankton species composition, formation of marine snow and the role of heterotrophic dinoflagellates. J. Plankton Res., 18, 133-155.
30. Watanabe, Y., Mitani, Y., Sato, K. et al. (2003) Dive depths of Weddell seals in relation to vertical prey distribution as estimated by image data. Mar. Ecol. Prog. Ser., 252, 283-288.
31. Watson, J. (2004) HoloMar: a holographic camera for subsea imaging of plankton. Sea Tech., 45, 53-55.
32. Wolk, F., Seuront, L. and Yamazaki, H. (2001) Spatial resolution of a new micro-optical probe for chlorophyll and turbidity. J. Tokyo Uni. Fish., 87, 13-21.
33. Wolk, F., Yamazaki, H., Seuront, L. et al. (2002) A new free fall profiler for measuring biophysical microstructure. J. Atmos. Ocean. Tech., 19, 780-793.
34. Wolk, F., Yamazaki, H., Li, H. et al. (2006) Calibrating the spatial response of bio-optical sensors. J. Atmos. Ocean. Technol., 23, 511-516.
35. Yamazaki, H. and Squires, K. D. (1996) Comparison of oceanic turbulence and copepod swimming. Mar. Ecol. Prog. Ser., 144, 299-301.
36. Yamazaki, H., Mitchell, J. G., Seuront, L. et al. (2006) Phytoplankton microstructure in fully developed oceanic turbulence. Geophys. Res. Lett., 33, L01603. doi:10.1029/2005GL024103. (Pubitemid 43316197)