Application of laser microdissection to plant pathogenic and symbiotic interactions

Journal of Plant Interactions

Volumn 4, Issue 2, 2009, Pages 81-92

  Balestrini, Raffaella ^a   Gómez Ariza, Jorge ^a   Klink, Vincent P ^b   Bonfante, Paola ^a  

^a CNR   (Italy)

^b MISSISSIPPI STATE UNIVERSITY   (United States)

Author keywords

Arbuscular mycorrhizae; Gene expression; Laser microdissection; Pathogenic interactions; Symbiotic interactions

Indexed keywords

ARBUSCULAR; FUNGI;

EID: 70449578967     PISSN: 17429145     EISSN: 17429153     Source Type: Journal    
DOI: 10.1080/17429140902770396     Document Type: Article

References (70)

1. Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC, Caillaud MC, Coutinho PM, Dasilva C, De Luca F, Deau F, Esquibet M, Flutre T, Goldstone JV, Hamamouch N, Hewezi T, Jaillon O, Jubin C, Leonetti P, Magliano M, Maier TR, Markov GV, McVeigh P, Pesole G, Poulain J, Robinson-Rechavi M, Sallet E, Segurens B, Steinbach D, Tytgat T, Ugarte E, van Ghelder C, Veronico P, Baum TJ, Blaxter M, Bleve-Zacheo T, Davis EL, Ewbank JJ, Favery B, Grenier E, Henrissat B, Jones JT, Laudet V, Maule AG, Quesneville H, Rosso MN, Schiex T, Smant G, Weissenbach J, Wincker P. 2008. Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotech. 26:909-915.
2. Alkharouf NW, Klink VP, Chouikha IB, Beard HS, MacDonald MH, Meyer S, Knap HT, Khan R, Matthews BF. 2006. Timecourse microarray analyses reveals global changes in gene expression of susceptible Glycine max (soybean) roots during infection by Heterodera glycines (soybean cyst nematode). Planta. 224:838-852.
3. Asano T, Masumura T, Kusano H, Kikuchi S, Kurita A, Shimada H, Kadowaki K. 2002. Construction of a specialized cDNA library from plant cells isolated by laser capture microdissection: Toward comprehensive analysis of the genes expressed in the rice phloem. Plant J. 32:401-408.
4. Balestrini R, Bonfante P. 2005. The interface compartment in arbuscular mycorrhizae: A special type of plant cell wall? Plant Biosyst. 139:8-15.
5. Balestrini R, Lanfranco L. 2006. Fungal and plant gene expression in arbuscular mycorrhizal symbiosis. Mycorrhiza. 16:509-524.
6. Balestrini R, Gomez-Ariza J, Lanfranco L, Bonfante P. 2007. Laser Microdissection reveals that transcripts for five plant and one fungal phosphate transporter genes are contemporaneously present in arbusculated cells. Mol Plant-Microbe Interact. 20(9):1055-1062.
7. Balestrini R, Bonfante P. 2008. Laser Microdissection (LM): Applications to plant materials. Plant Biosyst. 142:331-336.
8. Birnbaum K, Shasha DE, Wang JY, Jung JW, Lambert GM, Galbraith DW, Benfey PN. 2003. A gene expression map of the Arabidopsis root. Science. 302: 1956-1960.
9. Brandt SP. 2005. Microgenomics: gene expression analysis at the tissue-specific and single-cell levels. J Exp Bot. 56:495-505.
10. Bucher M, Brunner S, Zimmermann P, Zardi GI, Amrhein N, Willmitzer L, Riesmeier JW. 2002. The expression of an extensin-like protein correlates with cellular tip growth in tomato1. Plant Physiol. 128:911-923.
11. Cai S, Lashbrook CC. 2006. Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling. Plant J. 48:628-637.
12. Casson S, Spencer M, Walker K, Lindsey K. 2005. Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis. Plant J. 42:111-123.
13. Day RC, Grossniklaus U, Macknight RC. 2005. Be more specific! Laser-assisted microdissection of plant cells. Trends Plant Sci. 10:397-405.
14. Day RC, McNoe LA, Macknight RC. 2006. Transcript analysis of laser microdissected plant cells. Physiol Plant. 129(2):267-282.
15. Day RC, McNoe L, Macknight RC. 2007 Evaluation of global RNA amplification and its use for high-throughput transcript analysis of laser-microdissected endosperm. Int J Plant Genomics.
16. Dembinsky D, Woll C, Saleem M, Liu Y, Fu Y, Borsuk LA, Lamkemeyer T, Fladerer C, Madlung J, Barbazuk B, Nordheim A, Nettleton D, Schnable PS, Hochholdinger F. 2007. Transcriptomic and proteomic analyses of pericycle cells of the maize (Zea mays L) primary root. Plant Physiol. 145:575-588.
17. Dillon D, Zheng K, Costa J. 2001. Rapid, efficient genotyping of clinical tumor samples by laser-capture microdissection/PCR/SSCP. Exp Mol Pathol. 70: 195-200.
18. Emmert-Buck MR, Bonner RF, Smith PD, Chuaqui RF, Zhuang Z, Goldstein SR, Weiss RA, Liotta LA. 1996. Laser capture microdissection. Science. 274:998-1001.
19. Emrich SJ, Barbazuk WB, Li L, Schnable PS. 2007. Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res. 17:69-73.
20. Endo BY. 1965. Histological responses of resistant and susceptible soybean varieties, and backcross progeny to entry development of Heterodera glycines. Phytopathology. 55:375-381.
21. Endo BY. 1991. Ultrastructure of initial responses of resistant and susceptible soybean roots to infection by Heterodera glycines. Rev Nematol. 14:73-94.
22. Espina V, Milia J, Wu G, Cowherd S, Liotta LA. 2006. Laser capture microdissection. Methods Mol Biol. 319:213-229.
23. Espina V, Heiby M, Pierobon M, Liotta LA. 2007. Laser capture microdissection technology. Expert Rev Mol Diagn. 7:647-657.
24. Fink L, Bohle RM. 2005. Laser microdissection and RNA analysis. Methods Mol Biol. 293:167-185.
25. Galbraith DW, Birnbaum K. 2006. Global studies of cell type-specific gene expression in plants. Ann Rev Plant Biol. 57:451-475.
26. Genre A, Chabaud M, Timmers T, Bonfante P, Barker DG. 2005. Arbuscular mycorrhizal fungi elicit a novel intracellular apparatus in Medicago truncatula root epidermal cells before infection. Plant Cell. 17:3489-99.
27. Genre A, Chabaud M, Faccio A, Barker DG, Bonfante P. 2008. Prepenetration apparatus assembly precedes and predicts the colonization patterns of arbuscular mycorrhizal fungi within the root cortex of both Medicago truncatula and Daucus carota. Plant Cell. 20:1407-1420.
28. Gomez SK, Javot H, Deewatthanawong P, Torres-Jerez I, Tang Y, Blancaflor EB, Udvardi MK, Harrison MJ. 2009. Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis. BMC Plant Biol. 9:10 doi 10.1186/1471-2229-10.
29. Gomez SK, Harrison MJ. 2009. Laser microdissection and its application to analyze gene expression in arbuscular mycorrhizal symbiosis. Pest Manag Sci. www.inter science.wiley.com. doi 10.1002/ps.1715
30. Guether M, Balestrini R, Hannah M, He J, Udvardi M, Bonfante P. 2009. Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus. New Phytol. doi: 101111/j1469-8137200802725x. In press.
31. Harrison MJ, Dewbre GR, Liu J. 2002. A phosphate transporter from Medicago truncatula involved in the acquisition of phosphate released by arbuscular mycorrhizal fungi. Plant Cell. 14:2413-2429.
32. Haseloff J, Siemering KR, Prasher DC, Hodge S. 1997. Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly. PNAS. 94: 2122-2127.
33. Hobza R, Vyskot B. 2007. Laser microdissection-based analysis of plant sex chromosomes. Methods Cell Biol. 82:433-453.
34. Inada N, Wildermuth MC. 2005. Novel tissue preparation method and cell-specific marker for laser microdissection of Arabidopsis mature leaf. Planta. 221:9-16.
35. Iscove NN, Barbara M, Gu M, Gibson M, Modi C, Winegarden N. 2002. Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA. Nat Biotech. 20:940-943.
36. Isenberg G, Bielser W, Meier-Ruge W, Remy E. 1976. Cell surgery by laser micro-dissection: A preparative method. J Microsc. 107:19-24.
37. Ithal N, Recknor J, Nettleton D, Maier T, Baum TJ, Mitchum MG. 2007. Developmental transcript profiling of cyst nematode feeding cells in soybean roots. Mol Plant-Microbe Interac. 20:510-525.
38. Jefferson RA, Kavanagh TA, Bevan MW. 1987. GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6: 3901-3907.
39. Jiang K, Zhang S, Lee S, Tsai G, Kim K, Huang H, Chilcott C, Zhu T, Feldman LJ. 2006. Transcription profile analyses identify genes and pathways central to root cap functions in maize. Plant Mol Biol. 60: 343-363.
40. Kerk NM, Ceserani T, Tausta SL, Sussex IM, Nelson TM. 2003. Laser capture microdissection of cells from plant tissues. Plant Physiol. 132:27-35.
41. Kim YH, Riggs RD, Kim KS. 1987. Structural changes associated with resistance of soybean to Heterodera glycines. J Nematol. 19:177-187.
42. Khan R, Alkharouf N, Beard HS, MacDonald M, Chouikha C, Meyer S, Grefenstette J, Knap H, Matthews B. 2004. Microarray analysis of gene expression in soybean roots susceptible to the soybean cyst nematode two days post invasion. J Nematol. 36:241-248.
43. Klink VP, Alkharouf N, MacDonald M, Matthews B. 2005. Laser capture microdissection (LCM) and expression analyses of Glycine max (soybean) syncytium containing root regions formed by the plant pathogen Heterodera glycines (soybean cyst nematode). Plant Mol Biol. 59:965-979.
44. Klink VP, Overall CC, Alkharouf NW, MacDonald MH, Matthews BF. 2007a. Laser capture microdissection (LCM) and comparative microarray expression analysis of syncytial cells isolated from incompatible and compatible soybean (Glycine max) roots infected by the soybean cyst nematode (Heterodera glycines). Planta. 226:1389-1409.
45. Klink VP, Overall CC, Alkharouf NW, MacDonald MH, Matthews BF. 2007b. A time-course comparative microarray analysis of an incompatible and compatible response by Glycine max (soybean) to Heterodera glycines (soybean cyst nematode) infection. Planta. 226:1423-1447.
46. Klink VP, Matthews BF. 2008. The use of laser capture microdissection to study the infection of Glycine max (soybean) by Heterodera glycines (soybean cyst nematode). Plant Signaling Behav. 3:206.
47. Köck M, Stenzel I, Zimmer A. 2006. Tissue-specific expression of tomato Ribonuclease LX during phosphate starvation-induced root growth. J Exp Bot. 57:3717-3726.
48. Küster H, Vieweg MF, Manthey K, Baier MC, Hohnjec N, Perlick AM. 2007. Identification and expression regulation of symbiotically activated legume genes. Phytochem. 68:8-18.
49. Liu Y, Lamkemeyer T, Jakob A, Mi G, Zhang F, Nordheim A, Hochholdinger F. 2006. Comparative proteome analyses of maize (Zea mays L) primary roots prior to lateral root initiation reveal differential protein expression in the lateral root initiation mutant rum1. Proteomics. 6:4300-4308.
50. Meimberg H, Thalhammer S, Brachmann A, Muller B, Eichacker LA, Heckl WM, Heubl G. 2003. Selection of chloroplasts by laser microbeam microdissection for single-chloroplast PCR. Biotechniques. 34:1238-1243.
51. Nakazono M, Qiu F, Borsuk LA, Schable PS. 2003. Laser capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: Identification of genes expressed differentially in epidermal cells or vascular tissue of maize. Plant Cell. 15:583-596.
52. Nehls U, Mikolajewski S, Magel E, Hampp R. 2001. Carbohydrate metabolism in ectomycorrhizas: gene expression, monosaccharide transport and metabolic control. New Phytol. 150:533-541.
53. Nelson T, Tausta SL, Gandotra N, Liu T. 2006. Laser microdissection of plant tissue: What you see is what you get. Ann Rev Plant Biol. 57:181-201.
54. Ohtsu K, Takahashi H, Schnable PS, Nakazono M. 2007. Cell type-specific gene expression profiling in plants by using a combination of laser microdissection and high-throughput technologies. Plant Cell Physiol. 48:3-7.
55. Parniske M. 2008. Arbuscular mycorrhiza: the mother of plant root endosymbioses. Nat Rev Microbiol. 6: 763-775.
56. Pérez-de-Luque A, Moreno MT, Rubiales D. 2008. Host plant resistance against broomrapes (Orobanche spp): Defence reactions and mechanisms of resistance. Ann Appl Biol. 152:131-141.
57. Petalidis L, Bhattacharyya S, Morris GA, Collins VP, Freeman TC, Lyons PA. 2003. Global amplification of mRNA by template-switching PCR: linearity and application to microarray analysis. Nucleic Acids Res. 31(22):e142.
58. Ramsay K, Wang Z, Jones MGK. 2004. Using laser capture microdissection to study gene expression in early stages of giant cells induced by root-knot nematodes. Mol Plant Pathol. 5:587-592.
59. Ramsay K, Jones MGK, Wang Z. 2006. Laser capture microdissection: A novel approach to microanalysis of plant-microbe interactions. Mol Plant Pathol. 7:429-43.
60. Riggs RD, Kim KS, Gipson I. 1973. Ultrastructural changes in Peking soybeans infected with Heterodera glycines. Phytopathol. 63:76-84.
61. Schad M, Lipton MS, Giavalisco P, Smith RD, Kehr J. 2005a. Evaluation of two-dimensional electrophoresis and liquid chromatography tandem mass spectrometry for tissue-specific protein profiling of laser-microdissected plant samples. Electrophoresis 26:2729-2738.
62. Schad M, Mungur R, Fiehn O, Kehr J. 2005b. Metabolic profiling of laser microdissected vascular bundles of Arabidopsis thaliana. Plant Meth. 1:2.
63. Schneider B, Hölscher D. 2006. Laser microdissection and cryogenic nuclear magnetic resonance spectroscopy: An alliance for cell type-specific metabolite profiling. Planta. 225:763-770.
64. Scutt CP, Kamisugi Y, Sakai F, Gilmartin PM. 1997. Laser isolation of plant sex chromosomes: Studies on the DNA composition of the X and Y sex chromosomes of Silene latifolia. Genome. 40:705-715.
65. Siciliano V, Genre A, Balestrini R, Cappellazzo G, DeWitt P, Bonfante P. 2007. Transcriptome analysis of arbuscular mycorrhizal roots during development of the prepenetration apparatus. Plant Physiol. 144:1455-1466.
66. Takagi H, Shibutani M, Kato N, Fujita H, Lee K-Y, Takigami S, Mitsumori K, Hirose M. 2004. Microdissected region-specific gene expression analysis with methacarn-fixed, paraffin-embedded tissues by realtime RT-PCR. J Histochem Cytochem. 52:903-913.
67. Tang W, Coughlan S, Crane E, Beatty M, Duvick J. 2006. The application of laser microdissection to in planta gene expression profiling of the maize anthracnose stalk rot fungus Colletotrichum graminicola. Mol Plant-Microbe Interact. 19:1240-1250.
68. Tao Y, Xie Z, Chen W, Glazebrook J, Chang HS, Han B, Zhu T, Zou G, Katagiri F. 2003. Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. Plant Cell. 15:317-330.
69. Wise RP, Moscou MJ, Bogdanove AJ, Whitham SA. 2007. Transcripts profiling in host-pathogen interactions. Annu Rev Phytopathol. 45:329-369.
70. Woll K, Borsuk LA, Stransky H, Nettleton D, Schnable PS, Hochholdinger F. 2005. Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1. Plant Physiol. 139:1255-1267.