Detection of Cochlodinium polykrikoides and Gymnodinium impudicum (Dinophyceae) in sediment samples from Korea using real-time PCR

Harmful Algae

Volumn 9, Issue 1, 2010, Pages 59-65

  Park, Tae Gyu ^a   Park, Young Tae ^a  

^a National Fisheries Research and Development Institute (NFRDI)   (South Korea)

Author keywords

Cochlodinium polykrikoides; Cyst; Gymnodinium impudicum; Harmful algal blooms; Real time PCR; Red tide

Indexed keywords

ALGAE; COCHLODINIUM POLYKRIKOIDES; DINOPHYCEAE; GYMNODINIUM;

EID: 70449525331     PISSN: 15689883     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.hal.2009.08.002     Document Type: Article

References (33)

1. Anderson D.M., and Wall D. The potential importance of benthic cysts of Gonyaulax tamarensis and Gonyaulax excavata in initiating toxic dinoflagellate blooms. J. Phycol. 14 (1978) 224-234
2. Anderson D.M. Effects of temperature conditioning on development and germination of Gonyaulax tamarensis (Dinophyceae) hypnozygotes. J. Phycol. 16 (1980) 166-172
3. Anderson D.M., Coats D.W., and Tyler M.A. Encystment of the dinoflagellate Gyrodinium uncatenatum: temperature and nutrient effects. J. Phycol. 21 (1985) 200-206
4. Anderson D.M., and Keafer B.A. An endogenous annual clock in the toxic marine dinoflagellate Gonyaulax tamarensis. Nature 325 (1987) 616-617
5. Bowers H.A., Trice T.M., Magnien R.E., Goshorn D.M., Michael B., Schaefer E.F., Rublee P.A., and Oldach D.W. Detection of Pfiesteria spp. by PCR in surface sediments collected from Chesapeake Bay tributaries (Maryland). Harmful Algae 5 (2006) 342-351
6. Binder K.B., and Anderson D.M. Physiological and environmental control of germination in Scrippsiella trochoidea (Dinophyceae) resting cysts. J. Phycol. 23 (1987) 99-107
7. Bowers H.A., Tengs T., Glasgow H.B., Burkholder J.M., Rublee P.A., and Oldach D.W. Development of real-time PCR assays for rapid detection of Pfiesteria piscicida and related dinoflagellates. Appl. Environ. Microbiol. 66 (2000) 4641-4648
8. Coyne K.J., Hare C.E., Popels L.C., Hutchins D.A., and Cary S.C. Distribution of Pfiesteria piscicida cyst populations in sediments of the Delaware Inland Bays, USA. Harmful Algae 5 (2006) 363-373
9. Cullen D.W., and Hirsch P.R. Simple and rapid method for direct extraction of microbial DNA from soil for PCR. Soil Biol. Biochem. 30 (1998) 983-993
10. Dale B. Dinoflagellate resting cysts: "benthic plankton". In: Fryxell G.A. (Ed). Survival Strategies of the Algae (1983), Cambridge University Press, Cambridge 69-136
11. Dale B. The cyst-motile stage relationships of the dinoflagellates Diplopelta symmetrica and Diplopsalopsis latipeltata. Eur. J. Phycol. 28 (1993) 129-137
12. England L.S., Lee H., and Trevors J.T. Persistence of Pseudomonas aureofaciens strains and DNA in soil. Soil Biol. Biochem. 29 (1997) 1521-1527
13. Galluzzi L., Penna A., Bertozzini E., Vila M., Garcés E., and Magnani M. Development of a real-time PCR assay for rapid detection and quantification of Alexandrium minutum (a Dinoflagellate). Appl. Environ. Microbiol. 70 (2004) 1199-1206
14. Guillard R.R.L., and Ryther J.H. Studies of marine planktonic diatoms. I. Cyclotella nana Hustedt and Detonula confervacea cleve. Can. J. Microbiol. 8 (1962) 229-239
15. Guy R.A., Payment P., Krull U.J., and Horgen P.A. Real-time PCR for quantification of Giardia and Cryptosporidium in environmental water samples and sewage. Appl. Environ. Microbiol. 69 (2003) 5178-5185
16. Kamikawa R., Asai J., Miyahara T., Murata K., Oyama K., Yoshimatsu S., Yoshida T., and Sako Y. Application of a real-time PCR assay to a comprehensive method of monitoring harmful algae. Microbes Environ. 21 (2006) 163-173
17. Kamikawa R., Nagai S., Hosoi-Tanabe S., Itakura S., Yamaguchi M., Uchida Y., Baba T., and Sako Y. Application of real-time PCR assay for detection and quantification of Alexandrium tamarense and Alexandrium catenella cysts from marine sediments. Harmful Algae 6 (2007) 413-420
18. Kim C.H., Cho H.J., Shin J.B., Moon C.H., and Matsuoka K. Overwintering potential of hyaline cysts of Cochlodinium polykrikoides (Gymnodiniales, Dinophyceae): an annual red tide organism along the Korean coast. Phycologia 41 (2002) 667-669
19. Kim C.J., Kim H.G., Kim C.H., and Oh H.M. Life cycle of the ichthyotoxic dinoflagellate Cochlodinium polykrikoides in Korean coastal waters. Harmful Algae 6 (2007) 104-111
20. Kim C.S., Lee S.G., Lee C.K., Kim H.G., and Jung J. Reactive oxygen species as causative agents in the ichthyotoxicity of the red tide dinoflagellate Cochlodinium polykrikoides. J. Plankton Res. 21 (1999) 2105-2115
21. Kim D., Oda T., Muramatsu T., Kim D., Matsuyama Y., and Honjo T. Possible factors responsible for the toxicity of Cochlodinium polykrikoides, a red tide phytoplankton. Comp. Biochem. Physiol. C 132 (2002) 415-423
22. Kremp A., and Parrow M.W. Evidence for asexual resting cysts in the life cycle of the marine peridinoid dinoflagellate, Scrippsiella hangoei. J. Phycol. 42 (2006) 400-409
23. Lin S., Zhang H., and Dubois A. Low abundance distribution of Pfiesteria piscicida in Pacific and Western Atlantic as detected by mtDNA-18S rDNA real-time polymerase chain reaction. J. Plankton Res. 28 (2006) 667-681
24. Litaker R.W., Vandersea M.W., Kibler S.R., Reece K.S., Stokes N.A., Steidinger K.A., Millie D.F., Bendis B.J., Pigg R.J., and Tester P.A. Identification of Pfiesteria piscicida (Dinophyceae) and Pfiesteria-like organisms using internal transcribed spacer-specific PCR assays. J. Phycol. 39 (2003) 754-761
25. Matsuoka K., and Fukuyo Y. Technical Guide for Modern Dinoflagellate Cyst Study (2000), IOC/WESTPAC-HAB, the University of Tokyo, Tokyo 29 pp., 22 pls
26. NFRDI. Data on Red Tides (2008). http://www.nfrdi.re.kr/redtideInfo (written in Korean)
27. Olli K., and Anderson D.M. High encystment success of the dinoflagellate Scrippsiella cf. lachrymosa in culture experiments. J. Phycol. 38 (2002) 145-156
28. Park T.G., de Salas M.F., Bolch C.J.S., and Hallegraeff G.M. Development of a real-time PCR probe for quantification of the heterotrophic dinoflagellate Cryptoperidiniopsis brodyi (Dinophyceae) in environmental samples. Appl. Environ. Microbiol. 73 (2007) 2552-2560
29. Park T.G., Bell E.M., Pearce I., Rublee P.A., Bolch C.J.S., and Hallegraeff G.M. Detection of a novel ecotype of Pfiesteria piscicida (Dinophyceae) in an Antarctic saline lake by real-time PCR. Polar Biol. 30 (2007) 843-848
30. Park T.G., Park G.H., Park Y.T., Kang Y.S., Bae H.M., Kim C.H., Jeong H.J., and Lee Y. Identification of the dinoflagellate community during Cochlodinium polykrikoides (Dinophyceae) blooms using amplified rDNA melting curve analysis and real-time PCR probes. Harmful Algae 8 (2009) 430-440
31. Park T.G., Park Y.T., and Lee Y. Development of a SYTO9 based real-time PCR probe for detection and quantification of toxic dinoflagellate Karlodinium veneficum (Dinophyceae) in environmental samples. Phycologia 48 (2009) 32-43
32. Pfiester L.A., and Anderson D.M. Dinoflagellate reproduction. In: Taylor F.J.R. (Ed). The Biology of Dinoflagellates. Botanical Monographs (1987), Blackwell Science Publications, Oxford 611-648
33. Wilson I.G. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 63 (1997) 3741-3751