KIRMES: Kernel-based identification of regulatory modules in euchromatic sequences

BMC Bioinformatics

Volumn 10, Issue SUPPL. 13, 2009, Pages

  Schultheiss, Sebastian J ^a,b   Busch, Wolfgang ^b,c   Lohmann, Jan ^b,d   Kohlbacher, Oliver ^e   Rätsch, Gunnar ^a  

^a FRIEDRICH MIESCHER LABORATORY OF THE MAX PLANCK SOCIETY   (Germany)

^b MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY   (Germany)

^c DUKE UNIVERSITY   (United States)

^d UNIVERSITY OF HEIDELBERG   (Germany)

^e UNIVERSITY OF TÜBINGEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EUCHROMATIC SEQUENCES;

EID: 70449516712     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-S13-O1     Document Type: Note

References (4)

1. Gupta M, Liu J. De novo cis-regulatory module elicitation for eukaryotic genomes. Proc Natl Acad Sci USA 2005, 102(20):7079-7084. 1129096, 15883375.
2. Schultheiss SJ, Busch W, Lohmann JU, Kohlbacher O, Rätsch G. KIRMES: Kernel-based identification of regulatory modules in euchromatic sequences. Bioinformatics 2009, epub: 23 April 2009., 2722996, 19389732.
3. Sonnenburg S, Zien A, Philips P, Rätsch G. POIMs: Positional Oligomer Importance Matrices - understanding support vector machine-based signal detectors. Bioinformatics 2008, 24(13):i6-14. 2718648, 18586746.
4. Gordan R, Narlikar L, Hartemink A. A fast, alignment-free, conservation-based method for transcription factor binding site discovery. Lecture Notes in Computer Science: RECOMB 2008 4955:98-111. Springer, Heidelberg, Germany.