Collaborative scientific workflows

2009 IEEE International Conference on Web Services, ICWS 2009

Volumn , Issue , 2009, Pages 527-534

  Lu, Shiyong ^a   Zhang, Jia ^b  

^a Wayne State University   (United States)

^b NORTHERN ILLINOIS UNIVERSITY   (United States)

Author keywords

Collaboration model; Collaborative scientific workflows; Provenance model; Workflow model

Indexed keywords

ANALYSIS TOOLS; COLLABORATION MODEL; COLLABORATIVE SCIENTIFIC WORKFLOWS; DATA SETS; DISTRIBUTED COMPUTATIONS; PROVENANCE MODEL; RESEARCH CHALLENGES; SCIENTIFIC DISCOVERY; SCIENTIFIC RESEARCHES; SCIENTIFIC WORKFLOWS; STATE OF THE ART; WORKFLOW MODEL;

DISTRIBUTED COMPUTER SYSTEMS; RESEARCH; WEB SERVICES; WORK SIMPLIFICATION;

MANAGEMENT;

EID: 70449463052     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICWS.2009.150     Document Type: Conference Paper

References (41)

1. B. Ludäscher, I. Altintas, C. Berkley, D. Higgins, E. Jaeger, M. Jones, E.A. Lee, J. Tao, and Y. Zhao, "Scientific workflow management and the Kepler system", Concurrency and Computation: Practice & Experience, 2006, 18(10): pp. 1039- 1065.
2. Y. Gil, E. Deelman, J. Blythe, C. Kesselman, and H. Tangmunarunkit, "Artificial intelligence and Grids: workflow planning and beyond", IEEE Intelligent Systems, Jan.-Feb., 2004, 19(1): pp. 26-33.
3. T. Oinn, M. Greenwood, M. Addis, M.N. Alpdemir, J. Ferris, K. Glover, C. Goble, A. Goderis, D. Hull, D. Marvin, P. Li, P. Lord, M.R. Pocock, M. Senger, R. Stevens, A. Wipat, and C. Wroe, "Taverna: lessons in creating a workflow environment for the life sciences", Concurrency and Computation: Practice & Experience, 2006, 18(10): pp. 1067-1100.
4. D. Churches, G. Gombas, A. Harrison, J. Maassen, C. Robinson, M. Shields, I. Taylor, and I. Wang, "Programming scientific and distributed workflow with Triana services", Concurrency and Computation: Practice & Experience, 2006, 18(10): pp. 1021-1037.
5. J. Freire, C.T. Silva, S.P. Callahan, E. Santos, and C.E. Scheidegger, "Managing rapidly-evolving scientific workflows ", Lecture Notes in Computer Science, May, 2006, 4145/2006: pp. 10-18.
6. Y. Zhao, M. Hategan, B. Clifford, I. Foster, G. Laszewski, V. Nefedova, I. Raicu, T. Stef-Praun, and M. Wilde, "Swift: fast, reliable, loosely coupled parallel computation", in Proceedings of IEEE International Workshop on Scientific Workflows (SWF), Jul. 9-13, 2007, Salt Lake City, UT, USA, pp. 199-206.
7. A. Chebotko, C. Lin, X. Fei, Z. Lai, S. Lu, J. Hua, and F. Fotouhi, "VIEW: a visual scientific workflow management system", in Proceedings of the First IEEE International Workshop on Scientific Workflows (SWF), Jul., 9-13, 2007, Salt Lake City, UT, USA, pp. 207-208.
8. C. Lin, S. Lu, Z. Lai, A. Chebotko, X. Fei, J. Hua, and F. Fotouhi, "Service-oriented architecture for VIEW: a visual scientific workflow management system", in Proceedings of the IEEE 2008 International Conference on Services Computing (SCC), Jul. 9-11, 2008, Honolulu, HI, USA, pp. 335-342.
9. NCI, "Cancer Biomedical Informatics Grid (caBIG)", Available from:https://cabig.nci.nih.gov/.
10. A. Agrawal, M. Amend, M. Das, M. Ford, C. Keller, M. Kloppmann, D. König, F. Leymann, R. Müller, K. Plösser, R. Rangaswamy, A. Rickayzen, M. Rowley, P. Schmidt, I. Trickovic, A. Yiu, and M. Zeller, "WS-BPEL Extension for People (BPEL4People), Version 1.0", Jun., 2007, Available from: http://download.boulder.ibm.com/ibmdl/pub/software/dw/specs/ws- bpel4people/BPEL4People-v1.pdf.
11. E. Deelman and Y. Gil, "NSF Workshop on the Challenges of Scientific Workflows", May 1-2, 2006.
12. D. Worah and A. Sheth, "Transactions in transactional workflows", Advanced Transaction Models and Architectures, 1997: pp. 3-34.
13. J. Rubart and H. Richter, "Flexible notifications and task 533 models for cooperative work management", Metainformatics, 2004: pp. 32-41.
14. A. Lanzen and T. Oinn, "The Taverna Interaction Service: Enabling Manual Interaction in Workflows", Bioinformatics Applications Note, 2008, 24(8): pp. 1118-1120.
15. A. Agrawal, M. Amend, M. Das, M. Ford, C. Keller, M. Kloppmann, D. König, F. Leymann, R. Müller, G. Pfau, K. Plösser, R. Rangaswamy, A. Rickayzen, M. Rowley, P. Schmidt, I. Trickovic, A. Yiu, and M. Zeller, "Web Services Human Task (WS-HumanTask), Version 1.0", Jun., 2007, Available from: http://download.boulder.ibm.com/ibmdl/pub/software/dw/specs/ws- bpel4people/WS-HumanTaskv1.pdf.
16. R. Bose and J. Frew, "Lineage retrieval for scientific data processing: a survey", ACM Comput. Surv., 2005, 37(1): pp. 1- 28.
17. Y. Simmhan, B. Plale, and D. Gannon, "A survey of data provenance in e-science", SIGMOD Record, 2005, 34(3): pp. 31-36.
18. th International Conference on Scientific and Statistical Database Management (SSDBM), 2002, pp. 37-46.
19. rd IEEE International Conference on e-Science and Grid Computing, Dec. 10-13, 2007, Bangalore, India, pp. 611-618.
20. P. Groth, S. Miles, W. Fang, S.C. Wong, K.-P. Zauner, and L. Moreau, "Recording and using provenance in a protein compressibility experiment", in Proceedings of the 14th IEEE International Symposium on High Performance Distributed Computing (HPDC), Jul., 2005, Washington, DC, USA, pp. 201-208.
21. Y. Simmhan, B. Plale, and D. Gannon, "A framework for collecting provenance in data-centric scientific workflows", in Proceedings of IEEE International Conference on Web Services (ICWS), 2006, Chicago, IL, USA, pp. 427-436.
22. T. Ellkvist, D. Koop, E.W. Anderson, J. Freire, and C. Silva, "Using Provenance to Support Real-Time Collaborative Design of Workflows ", Lecture Notes in Computer Science, Nov., 2008, 5272: pp. 266-279.
23. S. Cohen, S. Boulakia, and S. Davidson, "Towards a model of provenance and user views in scientific workflows", Lecture Notes in Computer Science: Data Integration in the Life Sciences, Jul., 2006, 4075: pp. 264-279. (Pubitemid 44165795)
24. S. Bowers, T. McPhillips, B. Ludäscher, S. Cohen, and S.B. Davidson, "A model for user-oriented data provenance in pipelined scientific workflow", in Proceedings of the International Provenance and Annotation Workshop (IPAW), May, 2006, Chicago, IL, USA, pp. 133-147.
25. OPM, "Open Provenance Model (OPM)", Available from: http://openprovenance.org/.
26. M. Kang, J. Park, and J. Froscher, "Access control mechanisms for inter-organizational workflow", in Proceedings of the sixth ACM Symposium on Access Control Models and Technologies, May 3-4, 2001, Chantilly, VA, USA, pp. 66-74.
27. G. Fakas and B. Karakostas, "A workflow management system based on intelligent collaborative objects", Information & Software Technology, 1999, 41(13): pp. 907-915.
28. H. Song, J.J. Dong, C. Han, W.R. Jung, and C.-H. Youn, "A SLA-adaptive workflow integrated Grid resource management system for collaborative healthcare services", in Proceedings of the Third International Conference on Internet and Web Applications and Services (ICIW), Jun. 8-13, 2008, Athens, Greece, pp. 702-707.
29. L. Pudhota and E. Chang, "Collaborative workflow management using service oriented approach", in Proceedings of International Conference on E-Business, Enterprise Information Systems, E-Government (EEE), Jun. 20, 2005, Las Vegas, USA, pp. 167-173.
30. C.-J. Huang, C.V. Trappey, and C.C. Ku, "A JADE-based autonomous workflow management system for collaborative IC design", in Proceedings of the 11th International Conference on Computer Supported Cooperative Work in Design (CSCWD), Apr. 26-28, 2007, Melbourne, Australia, pp. 777-782.
31. D. Hollingsworth, "The workflow reference model", The Workflow Management Coalition, 1994.
32. N. Ayachitula, M.J. Buco, Y. Diao, M. Surendra, R. Pavuluri, L. Shwartz, and C. Ward, "IT service management automation-a hybrid methodology to integrate and orchestrate collaborative human centric and automation centric workflows", in Proceedings of IEEE International Conference on Services Computing (SCC), 2007, Salt Lake City, UT, USA, pp. 574-581.
33. D. Russell, P.M. Dew, and K. Djemame, "Service-based collaborative workflow for DAME", in Proceedings of IEEE International Conference on Services Computing (SCC), Jul. 11-15, 2005, Orlando, FL, USA, pp. 139-146.
34. D. Jordan and J. Evdemon, "Web Services Business Process Execution Language, Version 2.0", Apr., 2007, Available from: http://docs.oasisopen. org/wsbpel/2.0/OS/wsbpel-v2.0-OS.html.
35. A. Chebotko, M. Atay, S. Lu, and F. Fotouhi, "Relational nested optional join for efficient semantic Web query processing", Lecture Notes in Computer Science: Advances in Data and Web Management, Jun., 2007, 4505: pp. 428-439.
36. th IEEE Annual International Computer Software and Applications Conference (COMPSAC), 2004, Hong Kong, China, pp. 376-383.
37. th Annual International Computer Software and Applications Conference (COMPSAC), Nov. 3-6, 2003, Dallas, TX, USA, pp. 216-221.
38. J. Zhang, "Extended collaboration description language (XCODL)", in Proceedings of the Tenth IEEE International Conference on Enterprise Distributed Object Computing (EDOC), October 16-20, 2006, Hong Kong, China, pp. 56-66.
39. L.-J. Zhang, J. Zhang, and H. Cai, Services Computing. Springer, 2007.
40. A. Arsanjani, L.-J. Zhang, M. Ellis, A. Allam, and K. Channabasavaiah, "S3: A service-oriented reference architecture", IT Professional, May, 2007, 9(3): pp. 10-17.
41. L.-J. Zhang and J. Zhang, SOA Reference Architecture, in book chapter of "Web Services Research and Practices". 2008, IGI Global: Hershey, PA, USA.