Posture matching and elastic registration of a mouse atlas to surface topography range data

Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009

Volumn , Issue , 2009, Pages 366-369

  Joshi, A ^a   Chaudhari, A J ^b   Li, Changqing ^b   Shattuck, D W ^a   Dutta, J ^c   Leahy, R M ^c   Toga, A W ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b University of California   (United States)

^c UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

Deformable atlas; Mouse registration; Optical tomography

Indexed keywords

ALL-OPTICAL SYSTEMS; CO-ORDINATE SYSTEM; DATA SETS; DEFORMABLE ATLAS; ELASTIC ENERGY; ELASTIC REGISTRATION; FLUORESCENCE TOMOGRAPHY; MOUSE ANATOMY; MOUSE REGISTRATION; RANGE DATA; SURFACE MODELS;

DEFORMATION; MOBILE TELECOMMUNICATION SYSTEMS; OPTICAL SYSTEMS; OPTICAL TOMOGRAPHY;

SURFACE TOPOGRAPHY;

EID: 70449362062     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ISBI.2009.5193060     Document Type: Conference Paper

References (15)

1. A. P. Gibson, J. C. Hebden, and S. R. Arridge, "Recent advances in diffuse optical imaging," Phys Med Biol, vol. 50, no. 4, pp. R1- 43, 2005.
2. GWang,WCong, K Durairaj, X Qian, H Shen, P Sinn, E Hoffman, G McLennan, and M Henry, "In vivo mouse studies with bioluminescence tomography," Optics Express, vol. 14, no. 17, pp. 7801- 7809, 2006.
3. V. Ntziachristos, E.A. Schellenberger, J. Ripoll, D. Yessayan, E. Graves, A. Bogdanov, L. Josephson, and R. Weissleder, "Visualization of antitumor treatment by means of fluorescence molecular tomography with an annexin V-Cy5. 5 conjugate,"Proceedings of the National Academy of Sciences, vol. 101, no. 33, pp. 12294- 12299, 2004.
4. J. Ripoll, R. B. Schulz, and V. Ntziachristos, "Free-space propagation of diffuse light: theory and experiments," Phys Rev Lett, vol. 91, no. 10, pp. 103901, 2003.
5. Bradley W. Rice, Heng Xu, and Chaincy Kuo, "Surface construction using combined photographic and structured light information," May 2006, Patent Application 0268153.
6. M. Schweiger, SR Arridge, and DT Delpy, "Application of the finite-element method for the forward and inverse models in optical tomography," Journal of Mathematical Imaging and Vision, vol. 3, no. 3, pp. 263- 283, 1993.
7. H. Hoppe, T. DeRose, T. Duchamp, J. McDonald, and W. Stuetzle, "Surface reconstruction from unorganized points," Computer Graphics, vol. 26, pp. 71- 78, 1992.
8. I. Eckstein, J.P. Pons, Y. Tong, C.C.J.Kuo, andM. Desbrun, "Generalized Surface Flows for Mesh Processing," in Symposium on Geometry Processing, 2007, pp. 183-192.
9. B. Dogdas, D. Stout, A. F. Chatziioannou, and R. M. Leahy, "Digimouse: a 3D whole body mouse atlas from CT and cryosection data," Phys Med Biol, vol. 52, no. 3, pp. 577- 87, 2007.
10. G. Postelnicu, L. Zollei, and B. Fischl, "Combined volumetric and surface registration," Medical Imaging, IEEE Transactions on, 2008, accepted.
11. M.K. Chung, S.M. Robbins, K.M. Dalton, R.J. Davidson, A.L. Alexander, and A.C. Evans, "Cortical thickness analysis in autism with heat kernel smoothing," Neuroimage, vol. 25, no. 4, pp. 1256- 1265, 2005.
12. T.J.R. Hughes, The finite element method, Prentice-Hall, 1987.
13. D.W. Shattuck and R.M. Leahy, "BrainSuite: An automated cortical surface identification tool," Medical Image Analysis, vol. 6, no. 2, pp. 129- 142, 2002.
14. Changqing Li, Gregory S.Mitchell, Joyita Dutta, Sangtae Ahn, RichardM. Leahy, and Simon R. Cherry, "A three-dimensional multispectral fluorescence optical tomography imaging system for small animals based on a conical mirror design," Opt. Express, vol. 17, no. 9, pp. 7571- 7585, 2009.
15. CJ Van Rijsbergen, Information Retrieval, Butterworth-Heinemann Newton,MA, USA, 1979.