Image analysis of arabidopsis trichome patterning in 4D confocal datasets

Proceedings - 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2009

Volumn , Issue , 2009, Pages 742-745

  Bensch, R ^a   Ronneberger, O ^a   Greese, B ^a   Fleck, C ^a   Wester, K ^b   Hulskamp M ^b   Burkhardt, H ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

^b UNIVERSITY OF COLOGNE   (Germany)

Author keywords

Arabidopsis trichome patterning; Registration; Surface extraction; Symmetry plane; Trichome localization

Indexed keywords

ARABIDOPSIS TRICHOME PATTERNING; REGISTRATION; SURFACE EXTRACTION; SYMMETRY PLANE; TRICHOME LOCALIZATION;

HOUGH TRANSFORMS; IMAGE ANALYSIS; SUPPORT VECTOR MACHINES; TIME SERIES;

THREE DIMENSIONAL;

EID: 70449361882     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ISBI.2009.5193154     Document Type: Conference Paper

References (7)

1. M. Hülskamp, "Plant trichomes: a model for cell differentiation," Nat Rev Mol Cell Biol, vol. 5, no. 6, pp. 471-480, 2004.
2. K. Lee, J. Avondo, H. Morrison, L. Blot, M. Stark, J. Sharpe, A. Bangham, and E. Coen, "Visualizing plant development and gene expression in three dimensions using optical projection tomography," Plant Cell, vol. 18, no. 9, pp. 2145-2156, 2006.
3. E. Kaminuma, T. Yoshizumi, T. Wada, M. Matsui, and T. Toyoda, "Quantitative analysis of heterogeneous spatial distribution of arabidopsis leaf trichomes using micro x-ray computer tomography," Plant J., vol. 56, pp. 470-482(13), 2008.
4. O. Ronneberger, Q. Wang, and H. Burkhardt, "Fast and robust segmentation of spherical particles in volumetric data sets from brightfield microscopy," in Proc. of the ISBI, 2008, pp. 372-375.
5. Xin Liu, C. Imielinska, A.F. Laine, and A. D'Ambrosio, "Symmetry based multi-modality registration of the brain imagery," in Proc. of the ISSPIT, Cairo, 2007, pp. 807-812.
6. M. Kazhdan, B. Chazelle, D. Dobkin, T. Funkhouser, and S. Rusinkiewicz, "A reflective symmetry descriptor for 3d models," Algorithmica, vol. 38, pp. 201-225, 2003.
7. D. H. Ballard, "Generalizing the hough transform to detect arbitrary shapes," Pattern Recogn, vol. 13, no. 2, pp. 111-122, 1981.