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Volumn 2, Issue 2, 2009, Pages 97-102

SELEX: Combinatorial library methodology and applications

Author keywords

Aptamer; Combinatorial library; In vitro selection; Nucleotides; SELEX

Indexed keywords


EID: 70449123270     PISSN: 19760280     EISSN: 20927843     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (7)

References (42)
  • 1
    • 0025074907 scopus 로고
    • In vitro selection of RNA molecules that bind specific ligands
    • Ellington, A.D. & Szostak, J.W. In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818-822 (1990).
    • (1990) Nature , vol.346 , pp. 818-822
    • Ellington, A.D.1    Szostak, J.W.2
  • 2
    • 0034603154 scopus 로고    scopus 로고
    • Adaptive recognition by nucleic acid aptamers
    • Hermann, T & Patel, D.J. Adaptive recognition by nucleic acid aptamers. Science 287, 820-825 (2000).
    • (2000) Science , vol.287 , pp. 820-825
    • Hermann, T.1    Patel, D.J.2
  • 3
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk, C. & Gold, L. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249, 505-510 (1990).
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 4
    • 0029379767 scopus 로고
    • Nuclease-resistant nucleic acid ligands to vascular permeability factor/vascular endothelial growth factor
    • Green, L.S. et al. Nuclease-resistant nucleic acid ligands to vascular permeability factor/vascular endothelial growth factor. Chem. Biol. 2, 683-695 (1995).
    • (1995) Chem. Biol , vol.2 , pp. 683-695
    • Green, L.S.1
  • 5
    • 0028224199 scopus 로고
    • High -resolution molecular discrimination by RNA
    • Jenison, R.D., Gill, S.C., Pardi, A. & Polisky, B. High -resolution molecular discrimination by RNA. Science 263, 1425-1429 (1994).
    • (1994) Science , vol.263 , pp. 1425-1429
    • Jenison, R.D.1    Gill, S.C.2    Pardi, A.3    Polisky, B.4
  • 6
    • 0038375414 scopus 로고    scopus 로고
    • A DNA aptamer as a new target- specific chiral selector for HPLC
    • Michaud, M. et al. A DNA aptamer as a new target- specific chiral selector for HPLC. J. Am. Chem. Soc. 125, 8672-8679 (2003).
    • (2003) J. Am. Chem. Soc , vol.125 , pp. 8672-8679
    • Michaud, M.1
  • 7
    • 14744279443 scopus 로고    scopus 로고
    • Aptamers are ready for the spot-light
    • Mukhopadhyay, R. Aptamers are ready for the spot-light. Anal. Chem. 77, 114A-118A (2005).
    • (2005) Anal. Chem , vol.77
    • Mukhopadhyay, R.1
  • 8
    • 0032860385 scopus 로고    scopus 로고
    • Aptamers: An emerging class of molecules that rival antibodies in diagnostics
    • Jayasena, S.D. Aptamers: an emerging class of molecules that rival antibodies in diagnostics. Clin. Chem. 45, 1628-1650 (1999).
    • (1999) Clin. Chem , vol.45 , pp. 1628-1650
    • Jayasena, S.D.1
  • 9
    • 27644558626 scopus 로고    scopus 로고
    • Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions
    • Liu, J. & Stormo, G.D. Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions. Nucleic Acids Res. 33, e141 (2005).
    • (2005) Nucleic Acids Res , vol.33
    • Liu, J.1    Stormo, G.D.2
  • 10
    • 23944515324 scopus 로고    scopus 로고
    • Aptamer-based biosensors for the detection of HIV-1 Tat protein
    • Tombelli, S., Minunni, M., Luzi, E. & Mascini, M. Aptamer-based biosensors for the detection of HIV-1 Tat protein. Bioelectrochemistry 67, 135-141 (2005).
    • (2005) Bioelectrochemistry , vol.67 , pp. 135-141
    • Tombelli, S.1    Minunni, M.2    Luzi, E.3    Mascini, M.4
  • 11
    • 0037099536 scopus 로고    scopus 로고
    • Identification and characterization of nuclease-stabilized RNA molecules that bind human prostate cancer cells via the prostate-specific membrane antigen
    • Lupold, S.E., Hicke, B.J., Lin, Y. & Coffey, D.S. Identification and characterization of nuclease-stabilized RNA molecules that bind human prostate cancer cells via the prostate-specific membrane antigen. Cancer. Res. 62, 4029-4033 (2002).
    • (2002) Cancer. Res. , vol.62 , pp. 4029-4033
    • Lupold, S.E.1    Hicke, B.J.2    Lin, Y.3    Coffey, D.S.4
  • 12
    • 0037368588 scopus 로고    scopus 로고
    • RNA aptamers targeted to domain II of hepatitis C virus IRES that bind to its apical loop region
    • Kikuchi, K. et al. RNA aptamers targeted to domain II of hepatitis C virus IRES that bind to its apical loop region. J. Biochem. 133, 263-270 (2003).
    • (2003) J. Biochem , vol.133 , pp. 263-270
    • Kikuchi, K.1
  • 13
    • 1042296535 scopus 로고    scopus 로고
    • An improved method for the in vitro evolution of aptamers and applications in protein detection and purification
    • Murphy, M.B., Fuller, S.T., Richardson, P.M. & Doyle, S.A. An improved method for the in vitro evolution of aptamers and applications in protein detection and purification. Nucleic Acids Res. 31, e110 (2003).
    • (2003) Nucleic Acids Res , vol.e110 , pp. 31
    • Murphy, M.B.1    Fuller, S.T.2    Richardson, P.M.3    Doyle, S.A.4
  • 14
    • 27644440466 scopus 로고    scopus 로고
    • FluMag -SELEX as an advantageous method for DNA aptamer selection
    • Stoltenburg, R., Reinemann, C. & Strehlitz, B. FluMag -SELEX as an advantageous method for DNA aptamer selection. Anal. Bioanal. Chem. 383, 83-91 (2005).
    • (2005) Anal. Bioanal. Chem. , vol.383 , pp. 83-91
    • Stoltenburg, R.1    Reinemann, C.2    Strehlitz, B.3
  • 15
    • 0027434310 scopus 로고
    • Selective enrichment of RNA species for tight binding to Escherichia coli rho factor
    • Schneider, D., Gold, L. & Platt, T. Selective enrichment of RNA species for tight binding to Escherichia coli rho factor. FASEB J. 7, 201-207 (1993).
    • (1993) FASEB J , vol.7 , pp. 201-207
    • Schneider, D.1    Gold, L.2    Platt, T.3
  • 16
    • 0035371796 scopus 로고    scopus 로고
    • Specific oligobodies against ERK -2 that recognize both the native and the denatured state of the protein
    • Bianchini, M. et al. Specific oligobodies against ERK -2 that recognize both the native and the denatured state of the protein. J. Immunol. Methods 252, 191-197 (2001).
    • (2001) J. Immunol. Methods , vol.252 , pp. 191-197
    • Bianchini, M.1
  • 17
    • 0031741736 scopus 로고    scopus 로고
    • Identification of DNA recognition sequences and protein interaction domains of the multiple-Zn-finger protein
    • Tsai, R.Y. & Reed, R.R. Identification of DNA recognition sequences and protein interaction domains of the multiple-Zn-finger protein Roaz. Mol. Cell Biol. 18, 6447-6456 (1998).
    • (1998) Roaz. Mol. Cell Biol , vol.18 , pp. 6447-6456
    • Tsai, R.Y.1    Reed, R.R.2
  • 18
    • 70449129821 scopus 로고    scopus 로고
    • Inhibition of metallo-beta-lactamase by rational and combinatorial approaches
    • Texas Tech University, USA
    • Kim, S.K. Inhibition of metallo-beta-lactamase by rational and combinatorial approaches, Texas Tech University, USA (2002).
    • (2002)
    • Kim, S.K.1
  • 19
    • 0347760143 scopus 로고    scopus 로고
    • In vitro evolution of functional DNA using capillary electrophoresis
    • Mendonsa, S.D. & Bowser, M.T. In vitro evolution of functional DNA using capillary electrophoresis. J. Am. Chem. Soc. 126, 20-21 (2004).
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 20-21
    • Mendonsa, S.D.1    Bowser, M.T.2
  • 20
    • 26444463933 scopus 로고    scopus 로고
    • Capillary electrophoresis-SELEX selection of aptamers with affinity for HIV-1 reverse transcriptase
    • Mosing, R.K., Mendonsa, S.D. & Bowser, M.T. Capillary electrophoresis-SELEX selection of aptamers with affinity for HIV-1 reverse transcriptase. Anal. Chem. 77, 6107-6112 (2005).
    • (2005) Anal. Chem , vol.77 , pp. 6107-6112
    • Mosing, R.K.1    Mendonsa, S.D.2    Bowser, M.T.3
  • 21
    • 33646580058 scopus 로고    scopus 로고
    • Engineering the quadruplex fold: Nucleoside conformation determines both folding topology and molecularity in guanine quadruplexes
    • Tang, C.F. & Shafer, R.H. Engineering the quadruplex fold: nucleoside conformation determines both folding topology and molecularity in guanine quadruplexes. J. Am. Chem. Soc. 128, 5966-5973 (2006).
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 5966-5973
    • Tang, C.F.1    Shafer, R.H.2
  • 22
    • 70449130557 scopus 로고    scopus 로고
    • Staining of cell surface human CD4 with 2′-F-pyrimidine-containing RNA aptamers for flow cytometry
    • David, K.A., Abrams, B., Lin, Y. & Jayasena, S.D. Staining of cell surface human CD4 with 2′-F-pyrimidine-containing RNA aptamers for flow cytometry. J. Clin. Ligand Assay 20, 90-97 (1998).
    • (1998) J. Clin. Ligand Assay , vol.20 , pp. 90-97
    • David, K.A.1    Abrams, B.2    Lin, Y.3    Jayasena, S.D.4
  • 23
    • 9144271326 scopus 로고    scopus 로고
    • Immunofluorescence assay and flow- cytometry selection of bead-bound aptamers
    • Yang, X. et al. Immunofluorescence assay and flow- cytometry selection of bead-bound aptamers. Nucleic Acids Res. 31, e54 (2003).
    • (2003) Nucleic Acids Res , vol.31
    • Yang, X.1
  • 24
    • 21244434234 scopus 로고    scopus 로고
    • Selection of RNA aptamers against human influenza virus hemagglutinin using surface plasmon resonance
    • Misono, T.S. & Kumar, P.K. Selection of RNA aptamers against human influenza virus hemagglutinin using surface plasmon resonance. Anal. Biochem. 342, 312-317 (2005).
    • (2005) Anal. Biochem , vol.342 , pp. 312-317
    • Misono, T.S.1    Kumar, P.K.2
  • 25
    • 0344690107 scopus 로고    scopus 로고
    • Combinatorial selection of high affinity RNA ligands to live African try- panosomes
    • Homann, M. & Goringer, H.U. Combinatorial selection of high affinity RNA ligands to live African try- panosomes. Nucleic Acids Res. 27, 2006-2014 (1999).
    • (1999) Nucleic Acids Res , vol.27 , pp. 2006-2014
    • Homann, M.1    Goringer, H.U.2
  • 26
    • 0141891211 scopus 로고    scopus 로고
    • Characterization of 2′-fluoro-RNA aptamers that bind preferentially to disease-associated conformations of prion protein and inhibit conversion
    • Rhie, A. et al. Characterization of 2′-fluoro-RNA aptamers that bind preferentially to disease-associated conformations of prion protein and inhibit conversion. J. Biol. Chem. 278, 39697-39705 (2003).
    • (2003) J. Biol. Chem , vol.278 , pp. 39697-39705
    • Rhie, A.1
  • 27
    • 0037409875 scopus 로고    scopus 로고
    • Aptamers and SELEX: The technology
    • Sampson, T. Aptamers and SELEX: the technology. World Patent Inf. 25, 123-129 (2003).
    • (2003) World Patent Inf , vol.25 , pp. 123-129
    • Sampson, T.1
  • 28
    • 0036296520 scopus 로고    scopus 로고
    • Selection and stabilization of the RNA aptamers against the human immunodeficiency virus type-1 nucleocapsid protein
    • Kim, S.J., Kim, M.Y., Lee, J.H., You, J.C. & Jeong, S. Selection and stabilization of the RNA aptamers against the human immunodeficiency virus type-1 nucleocapsid protein. Biochem. Biophys. Res. Commun. 291, 925-931 (2002).
    • (2002) Biochem. Biophys. Res. Commun , vol.291 , pp. 925-931
    • Kim, S.J.1    Kim, M.Y.2    Lee, J.H.3    You, J.C.4    Jeong, S.5
  • 29
    • 1142306164 scopus 로고    scopus 로고
    • Site-specific incorporation of a photo-crosslinking component into RNA by T7 transcription mediated by unnatural base pairs
    • Kimoto, M. et al. Site-specific incorporation of a photo-crosslinking component into RNA by T7 transcription mediated by unnatural base pairs. Chem. Biol. 11, 47-55 (2004).
    • (2004) Chem. Biol , vol.11 , pp. 47-55
    • Kimoto, M.1
  • 30
    • 33748283311 scopus 로고    scopus 로고
    • DNA and RNA aptamers: From tools for basic research towards therapeutic applications
    • Ulrich, H. et al. DNA and RNA aptamers: from tools for basic research towards therapeutic applications. Comb. Chem. High Throughput Screen 9, 619-632 (2006).
    • (2006) Comb. Chem. High Throughput Screen , vol.9 , pp. 619-632
    • Ulrich, H.1
  • 33
    • 0030608959 scopus 로고    scopus 로고
    • 2+-binding RNA motifs with an asymmetric purine-rich internal loop and a G-A base pair
    • 2+-binding RNA motifs with an asymmetric purine-rich internal loop and a G-A base pair. RNA 3, 1289-1300 (1997).
    • (1997) RNA , vol.3 , pp. 1289-1300
    • Hofmann, H.P.1    Limmer, S.2    Hornung, V.3    Sprinzl, M.4
  • 37
    • 0029003145 scopus 로고
    • Three- dimensional structure of the complex of 4-guanidino- Neu5Ac2en and influenza virus neuraminidase
    • Varghese, J.N., Epa, V.C. & Colman, P.M. Three- dimensional structure of the complex of 4-guanidino- Neu5Ac2en and influenza virus neuraminidase. Protein Sci. 4, 1081-1087 (1995).
    • (1995) Protein Sci , vol.4 , pp. 1081-1087
    • Varghese, J.N.1    Epa, V.C.2    Colman, P.M.3
  • 38
    • 17444421169 scopus 로고    scopus 로고
    • Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance
    • Tu, D., Blaha, G., Moore, P.B. & Steitz, T.A. Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance. Cell 121, 257-270 (2005).
    • (2005) Cell , vol.121 , pp. 257-270
    • Tu, D.1    Blaha, G.2    Moore, P.B.3    Steitz, T.A.4
  • 39
    • 0031279943 scopus 로고    scopus 로고
    • In vivo imaging of inflammation using an aptamer inhibitor of human neutrophil elastase
    • Charlton, J., Sennello, J. & Smith, D. In vivo imaging of inflammation using an aptamer inhibitor of human neutrophil elastase. Chem. Biol. 4, 809-816 (1997).
    • (1997) Chem. Biol , vol.4 , pp. 809-816
    • Charlton, J.1    Sennello, J.2    Smith, D.3
  • 40
    • 30044436689 scopus 로고    scopus 로고
    • A therapeutic aptamer inhibits angiogenesis by specifically targeting the heparin binding domain of VEGF165
    • Lee, J.H. et al. A therapeutic aptamer inhibits angiogenesis by specifically targeting the heparin binding domain of VEGF165. Proc. Natl. Acad. Sci. USA 102, 18902-18907 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 18902-18907
    • Lee, J.H.1
  • 42
    • 0037388262 scopus 로고    scopus 로고
    • Specific SR protein-dependent splicing substrates identified through genomic SELEX
    • Kim, S., Shi, H., Lee, D.K. & Lis, J.T. Specific SR protein-dependent splicing substrates identified through genomic SELEX. Nucleic Acids Res. 31, 1955-1961 (2003).
    • (2003) Nucleic Acids Res , vol.31 , pp. 1955-1961
    • Kim, S.1    Shi, H.2    Lee, D.K.3    Lis, J.T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.