Nontemplated nucleotide addition prior to polyadenylation: A comparison of Arabidopsis cDNA and genomic sequences

RNA

Volumn 10, Issue 11, 2004, Pages 1695-1697

  Jin, Yongfeng ^a   Bian, Tengfei ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

3 end processing; Cleavage polyadenylation site; Nontemplated nucleotides

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; POLYADENYLATED RNA;

ARABIDOPSIS; ARTICLE; DNA BASE COMPOSITION; DNA SEQUENCE; MESSENGER RNA SYNTHESIS; POLYADENYLATION; PRIORITY JOURNAL; RNA CLEAVAGE;

ARABIDOPSIS; BASE SEQUENCE; CYTOSINE; DNA, COMPLEMENTARY; GENE LIBRARY; GENOME, PLANT; MODELS, GENETIC; NUCLEOTIDES; POLYADENYLATION; RNA PRECURSORS; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, MESSENGER; TEMPLATES, GENETIC;

ARABIDOPSIS;

EID: 7044269115     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.7610404     Document Type: Article

References (12)

1. Cho, H.D., Tomita, K., Suzuki, T., and Weiner, A.M. 2001. U2 small nuclear RNA is a substrate for the CCA-adding enzyme (tRNA nucleotidyltransferase). J. Biol. Chem. 277: 3447-3455.
2. Colgan, D. and Manley, J. 1997. Mechanism and regulation of mRNA polyadenylation. Genes & Dev. 11: 2755-2766.
3. Graber, J.H., McAllister, G.D., and Smith, T.F. 2002. Probabilistic prediction of Saccharomyces cerevisiae mRNA 3′-processing sites. Nucleic Acids Res. 30: 1851-1858.
4. Miller, W.A., Bujarski, J.J., Dreher, T.W., and Hall, T.C. 1986. Minus-strand initiation by brome mosaic virus replicase within the 3′ tRNA-like structure of native and modified RNA templates. J. Mol. Biol. 187: 537-546.
5. Murphy, S.K. and Park, G.D. 1997. Genome nucleotide lengths that are divisible by six are not essential but enhance replication of defective interfering RNAs of the paramyxovirus simian virus 5. Virology 232: 144-157.
6. Price, S.R., Ito, N., Outbridge, C., Avis, J.M., and Nagai, K. 1995. Crystallization of RNA-protein complexes. Methods for the large-scale preparation of RNA suitable for crystallographic studies. J. Mol. Biol. 249: 398-408.
7. Seki, M., Narusaka, M., Kamiya, A., Ishida, J., Satou, M., Sakurai, T., Nakajima, M., Enju, A., Akiyama, K., Oono, Y., et al. 2002. Functional annotation of a full-length Arabidopsis cDNA collection. Science 296: 141-145.
8. Sun, J.H., Adkins, S., Faurote, G., and Kao, C.C. 1996. Initiation of (2)-strand RNA synthesis catalyzed by the BMV RNA-dependent RNA polymerase: Synthesis of oligonucleotides. Virology 226: 1-12.
9. Tretheway, D.M., Yoshinari, S., and Dreher, T.W. 2001. Autonomous role of 3′-terminal CCCA in directing transcription of RNAs by Qβ replicase. J. Virol. 75: 11373-11383.
10. Williams, M.A., Johzuka, Y., and Mulligan, R.M. 2000. Addition of non-genomically encoded nucleotides to the 3′-terminus of maize mitochondrial mRNAs: Truncated rps12 mRNAs frequently terminate with CCA. Nucleic Acids Res. 28: 4444-4451.
11. Xiao, Y.L., Malik, M., Whitelaw, C.A., and Town, C.D. 2002. Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis. Plant Physiol. 130: 2118-2128.
12. Zhao, J., Hyman, L., and Moore, C. 1999. Formation of mRNA 3′ ends in eukaryotes: Mechanism, regulation and interrelationships with other steps in mRNA synthesis. Microbiol. Mol. Biol. Rev. 63: 405-445.