PCR-based identification and characterization of Burkholderia cepacia complex bacteria from clinical and environmental sources

Letters in Applied Microbiology

Volumn 39, Issue 5, 2004, Pages 413-419

  Seo, Sang Tae ^a,b   Tsuchiya, Kenichi ^a  

^a NATIONAL INSTITUTE FOR AGRO ENVIRONMENTAL SCIENCES   (Japan)

^b National Institute of Animal Science   (South Korea)

Author keywords

Burkholderia cepacia complex; emsR; prnC; RFLP analysis

Indexed keywords

STRAIN;

16S RDNA; BURKHOLDERIA; BURKHOLDERIA CEPACIA; BURKHOLDERIA CEPACIA COMPLEX; BURKHOLDERIA VIETNAMIENSIS; EMSR; PRNC; RFLP ANALYSE; STRAIN MARKERS; THAILAND;

GENES;

BACTERIUM; IDENTIFICATION METHOD; POLYMERASE CHAIN REACTION;

ANALYTIC METHOD; ARTICLE; BACTERIUM IDENTIFICATION; BURKHOLDERIA CEPACIA; BURKHOLDERIA CEPACIA GENOMOVAR; COMPLEX FORMATION; DNA DNA HYBRIDIZATION; GENOTYPE; GENOTYPE ENVIRONMENT INTERACTION; NONHUMAN; POLYMERASE CHAIN REACTION; PROTEIN ANALYSIS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEROTYPE; STRAIN DIFFERENCE;

ASIA; EASTERN HEMISPHERE; EURASIA; FAR EAST; JAPAN; SOUTHEAST ASIA; THAILAND; WORLD;

BACTERIA (MICROORGANISMS); BURKHOLDERIA; BURKHOLDERIA CENOCEPACIA; BURKHOLDERIA CEPACIA; BURKHOLDERIA CEPACIA COMPLEX; BURKHOLDERIA PYRROCINIA; BURKHOLDERIA STABILIS; BURKHOLDERIA VIETNAMENSIS; BURKHOLDERIA VIETNAMIENSIS; NEGIBACTERIA;

EID: 7044220826     PISSN: 02668254     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1472-765X.2004.01600.x     Document Type: Article

References (27)

1. Arima, K., Imanaka, I., Kousaka, M., Fukuta, A. and Tamura, G. (1964) Pyrrolnitrin, a new antibiotic substance, produced by a Pseudomonas. Agricultural and Biological Chemistry 28, 575-576.
2. Balandreau, J., Viallard, V., Cournoyer, B., Coenye, T., Laevens, S. and Vandamme, P. (2001) Burkholderia cepacia genomovar III is a common plant-associated bacterium. Applied and Environmental Microbiology 67, 982-985.
3. Bevivino, A., Dalmastri, C., Tabacchioni, S., Chiarini, L, Belli, M.L., Piana, S., Materazzo, A., Vandamme, P. et al. (2002) Burkholderia cepacia complex bacteria from clinical and environmental sources in Italy: genomovar status and distribution of traits related to virulence and transmissibility. Journal of Clinical Microbiology 40, 846-851.
4. Burkholder, W.H. (1950) Sour skin, a bacterial rot of onion bulbs. Phytopathology 40, 115-117.
5. Cartwright, D.K., Chilton, W.S. and Benson, D.M. (1995) Pyrrolnitrin and phenazine production by Pseudomonas cepacia, strain 5·5B, a biocontrol agent of Rhizoctonia solani. Applied Microbiology and Biotechnology 43, 211-216.
6. Clode, F.E., Kaufmann, M.E., Malnick, H. and Pitt, T.L. (2000) Distribution of genes encoding putative transmissibility factors among epidemic and nonepidemic strains of Burkholderia cepacia from cystic fibrosis patients in the United Kingdom. Journal of Clinical Microbiology 38, 1763-1766.
7. Coenye, T., LiPuma, J.J., Henry, D., Hoste, B., Vandemeulebroecke, K., Gillis, M., Speert, D.P. and Vandamme, P. (2001a) Burkholderia cepacia genomovar VI, a new member of the Burkholderia cepacia complex isolated from cystic fibrosis patients. International Journal of Systematic and Evolutionary Microbiology 51, 271-279.
8. Coenye, T., Mahenthiralingam, E., Henry, D., LiPuma, J.J., Laevens, S., Gillis, M., Speert, D.P. and Vandamme, P. (2001b) Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis related isolates. International Journal of Systematic and Evolutionary Microbiology 51, 1481-1490.
9. El-Banna, N. and Winkelmann, G. (1988) Pyrrolnitrin from Burkholderia cepacia: antibiotic activity against fungi and novel activities against streptomycetes. Journal of Applied Microbiology 85, 69-78.
10. Govan, J.R.W. and Deretic, V. (1996) Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia. Microbiological Reviews 60, 539-574.
11. Henry, D.A., Mahenthiralingam, E., Vandamme, P., Coenye, T. and Speert, D.P. (2001) Phenotypic methods for determining genomovar status of the Burkholderia cepacia complex. Journal of Clinical Microbiology 39, 1073-1078.
12. Holmes, A., Nolan, R., Taylor, R., Finley, R., Riley, M., Jiang, R.Z., Steinbach, S. and Goldstein, R. (1999) An epidemic of Burkholderia cepaica transmitted between patients with and without cystic fibrosis. Journal of Infectious Diseases 179, 1197-1205.
13. Huang, Y. and Wong, P.T.W. (1998) Effect of Burkholderia (Pseudomonas) cepacia and soil type on the control of crown rot in wheat. Plant and Soil 203, 103-108.
14. Hwang, J., Chilton, W.S. and Benson, D.M. (2002) Pyrrolnitrin production by Burkholderia cepacia and biocontrol of Rhizoctonia stem rot of poinsettia. Biological Control 25, 56-63.
15. Juhasz, A.L., Britz, M.L. and Stanley, G.A. (1996) Degradation of high molecular weight polycyclic aromatic hydrocarbons by Pseudomonas cepacia. Biotechnology Letters 18, 577-582.
16. LiPuma, J.J., Spilker, T., Gill, L.H., Campbell, P.W., III, Liu, L. and Mahenthiralingam, E. (2001) Disproportionate distribution of Burkhulderia cepacia complex species and transmissibility markers in cystic fibrosis. American Journal of Respiratory and Critical Care Medicine 164, 92-96.
17. Mahenthiralingam, E., Simpson, D.A. and Speert, D.P. (1997) Identification and characterization of a novel DNA marker associated with epidemic Burkholderia cepacia strains recovered from patients with cystic fibrosis. Journal of Clinical Microbiology 35, 808-816.
18. Mahenthiralingam, E., Bischof, J., Byrne, S.K., Radomski, C., Davies, J.E., Av-Gay, Y. and Vandamme, P. (2000) DNA-based diagnostic approaches for the identification of Burkholderia cepacia complex, Burkholderia vietnamiensis, Burkholderia multivorans, Burkholderia stabilis, Burkholderia cepacia genomovars I and III. Journal of Clinical Microbiology 38, 3165-3171.
19. Mavrodi, O.V., Gardener, B.B.M., Mavrodi, D.V., Bonsall, R.F., Weller, D.M. and Thomashow, L.S. (2001) Genetic diversity of ph1D from 2,4-diacetylphloroglucinol-producing fluorescent Pseudomonas spp. Phytopathology 91, 35-43.
20. McDowell, A., Mahenthiralingam, E., Moore, J.E., Dunbar, K.E.A., Webb, A.K., Dodd, M.E., Martin, S.L., Millar, B.C. et al. (2001) PCR-based detection and identification of Burkholderia cepacia complex pathogens in sputum from cystic fibrosis patients. Journal of Clinical Microbiology 39, 4247-4255.
21. Tsuchiya, K., Akhter, T., Takasaki, T., Tinaka, S. and Wakimoto, S. (1986) Bacterial brown spot disease of Cymbidium spp. caused by Pseudomonas cepacia. Annals of Phytopathological Society of Japan 52, 825-834.
22. Tsuchiya, K., Homma, Y., Komoto, Y. and Suzui, T. (1995) Practical detection of Pseudomonas cepacia from rhizosphere antagonistic to plant pathogens with a combination of selective medium and ELISA. Annals of Phytopathological Society of Japan 61, 318-324.
23. Vandamme, P., Holmes, B., Vancanneyt, M., Coenye, T., Hoste, B., Coopman, R., Revets, H., Lauwers, S. et al. (1997) Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov. International Journal of Systematic Bacteriology 47, 1188-1200.
24. Vandamme, P., Henry, D., Coenye, T., Nzula, S., Vancanneyt, M., LiPuma, J.J., Speert, D.P., Govan, J.R.W. et al. (2002) Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools. FEMS Immunology and Medical Microbiology 33, 143-149.
25. Vandamme, P., Holmes, B., Coenye, T., Goris, J., Mahenthiralingam, E., LiPuma, J.J. and Govan, J.R.W. (2003) Burkholderia cenocepacia sp. nov. - a new twist to an old story. Research in Microbiology 154, 91-96.
26. Vermis, K., Coenye, T., Mahenthiralingam, E., Nelis, H.J. and Vandamme, P. (2002) Evaluation of species-specific recA-based PCR tests for genomovar level identification within the Burkholderia cepacia complex. Journal of Medical Microbiology 51, 937-940.
27. Vermis, K., Coenye, T., LiPuma, J.J., Mahenthiralingam, E., Nelis, H.J. and Vandamme, P. (2004) Proposal to accommodate Burkholderia cepacia genomovar VI as Burkholderia dolosa sp. nov. International Journal of Systematic and Evolutionary Microbiology 54, 689-691.