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Volumn 43, Issue 4, 2009, Pages 612-619

Conserved structural features of ETS domain-DNA complexes

Author keywords

Comparative analysis of related structures; ETS family; Eukaryotic transcription factor; Protein DNA interaction

Indexed keywords

ANIMALIA; EUKARYOTA;

EID: 70350771076     PISSN: 00268933     EISSN: 16083245     Source Type: Journal    
DOI: 10.1134/S002689330904013X     Document Type: Article
Times cited : (3)

References (26)
  • 1
    • 0027967479 scopus 로고
    • Secondary structure of the ETS domain places murine Ets-1 in the superfamily of winged helix-turn-helix DNA-binding proteins
    • Donaldson L.W., Petersen J.M., Graves B.J., McIntosh L.P. 1994. Secondary structure of the ETS domain places murine Ets-1 in the superfamily of winged helix-turn-helix DNA-binding proteins. Biochemistry.33, 13509-13516.
    • (1994) Biochemistry. , vol.33 , pp. 13509-13516
    • Donaldson, L.W.1    Petersen, J.M.2    Graves, B.J.3    McIntosh, L.P.4
  • 2
    • 0021056037 scopus 로고
    • Tripartite structure of the avian erythroblastosis virus E26 transforming gene
    • Nunn M.F., Seeburg P.H., Moscovici C., Duesberg P.H. 1983. Tripartite structure of the avian erythroblastosis virus E26 transforming gene. Nature (Lond.).306, 391-395.
    • (1983) Nature (Lond.) , vol.306 , pp. 391-395
    • Nunn, M.F.1    Seeburg, P.H.2    Moscovici, C.3    Duesberg, P.H.4
  • 4
    • 0037448612 scopus 로고    scopus 로고
    • Molecular biology of the Ets family of transcription factors
    • Oikawa T., Yamada T. 2003. Molecular biology of the Ets family of transcription factors. Gene.303, 11-34.
    • (2003) Gene. , vol.303 , pp. 11-34
    • Oikawa, T.1    Yamada, T.2
  • 5
    • 0028813664 scopus 로고
    • A direct physical association between ETS and AP-1 transcription factors in normal human T cells
    • Bassuk A.G., Leiden J.M. 1995. A direct physical association between ETS and AP-1 transcription factors in normal human T cells. Immunity.3, 223-237.
    • (1995) Immunity. , vol.3 , pp. 223-237
    • Bassuk, A.G.1    Leiden, J.M.2
  • 6
    • 0030978193 scopus 로고    scopus 로고
    • Physical interactions between Ets and NF-kappaB/NFAT proteins play an important role in their cooperative activation of the human immunodeficiency virus enhancer in T cells
    • Bassuk A.G., Anandappa R.T., Leiden J.M. 1997 Physical interactions between Ets and NF-kappaB/NFAT proteins play an important role in their cooperative activation of the human immunodeficiency virus enhancer in T cells. J. Virol.71, 3563-3573.
    • (1997) J. Virol. , vol.71 , pp. 3563-3573
    • Bassuk, A.G.1    Anandappa, R.T.2    Leiden, J.M.3
  • 7
    • 0034628443 scopus 로고    scopus 로고
    • EAP1/Daxx interacts with ETS1 and represses transcriptional activation of ETS1 target genes
    • Li R., Pei H., Watson D.K., Papas T.S. 2000. EAP1/Daxx interacts with ETS1 and represses transcriptional activation of ETS1 target genes. Oncogene.19, 745-753.
    • (2000) Oncogene. , vol.19 , pp. 745-753
    • Li, R.1    Pei, H.2    Watson, D.K.3    Papas, T.S.4
  • 8
    • 0038628013 scopus 로고    scopus 로고
    • EAPII interacts with ETS1 and modulates its transcriptional function
    • Pei H., Yordy J.S., Leng Q., Zhao Q., Watson D.K., Li R. 2003. EAPII interacts with ETS1 and modulates its transcriptional function. Oncogene.22, 2699-2709.
    • (2003) Oncogene. , vol.22 , pp. 2699-2709
    • Pei, H.1    Yordy, J.S.2    Leng, Q.3    Zhao, Q.4    Watson, D.K.5    Li, R.6
  • 10
    • 0032103332 scopus 로고    scopus 로고
    • Ets transcription factors: Nuclear effectors of the Ras-MAP kinase signaling pathway
    • Wasylyk B., Hagman J., Gutierrez-Hartmann A. 1998. Ets transcription factors: Nuclear effectors of the Ras-MAP kinase signaling pathway. Trends Biochem. Sci.23, 213-216.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 213-216
    • Wasylyk, B.1    Hagman, J.2    Gutierrez-Hartmann, A.3
  • 11
  • 12
    • 13444307044 scopus 로고    scopus 로고
    • Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
    • Krissinel E., Henrick K. 2004. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Cryst.60, 2256-2268.
    • (2004) Acta Cryst. , vol.60 , pp. 2256-2268
    • Krissinel, E.1    Henrick, K.2
  • 16
    • 33745696155 scopus 로고    scopus 로고
    • CluD, a program for the determination of hydrophobic clusters in 3D structures of protein and protein-nucleic acids complexes
    • Alexeevski A., Spirin S., Alexeevski D., Klychnikov O., Ershova A., Titov M., Karyagina A. 2004. CluD, a program for the determination of hydrophobic clusters in 3D structures of protein and protein-nucleic acids complexes. Biofizika (Moscow). 48, Suppl. 1, 146-156.
    • (2004) Biofizika (Moscow) , vol.48 , Issue.SUPPL. 1 , pp. 146-156
    • Alexeevski, A.1    Spirin, S.2    Alexeevski, D.3    Klychnikov, O.4    Ershova, A.5    Titov, M.6    Karyagina, A.7
  • 17
    • 51749117617 scopus 로고    scopus 로고
    • Conserved water molecules in X-ray structures highlight the role of water in intramolecular and intermolecular interactions
    • Aksianov E., Zanegina O., Alexeevski A., Karyagina A., Spirin S. 2008. Conserved water molecules in X-ray structures highlight the role of water in intramolecular and intermolecular interactions. J. Bioinform. Comp. Biol.6, 775-788.
    • (2008) J. Bioinform. Comp. Biol. , vol.6 , pp. 775-788
    • Aksianov, E.1    Zanegina, O.2    Alexeevski, A.3    Karyagina, A.4    Spirin, S.5
  • 18
    • 0032101261 scopus 로고    scopus 로고
    • Interaction of human SRY protein with DNA: A molecular dynamics study
    • Tang Y., Nilsson L. 1998. Interaction of human SRY protein with DNA: A molecular dynamics study. Proteins.31, 417-433.
    • (1998) Proteins. , vol.31 , pp. 417-433
    • Tang, Y.1    Nilsson, L.2
  • 19
    • 0141954199 scopus 로고    scopus 로고
    • Energetics of sequence-specific protein-DNA association: Computational analysis of integrase Tn916 binding to its target DNA
    • Gorfe A.A., Jelesarov I. 2003. Energetics of sequence-specific protein-DNA association: Computational analysis of integrase Tn916 binding to its target DNA. Biochemistry.42, 11568-11576.
    • (2003) Biochemistry. , vol.42 , pp. 11568-11576
    • Gorfe, A.A.1    Jelesarov, I.2
  • 20
    • 10544228949 scopus 로고    scopus 로고
    • The role of a conserved water molecule in the redox-dependent thermal stability of iso-1-cytochrome c
    • Lett C.M., Berghuis A.M., Frey H.E., Lepock J.R., Guillemette J.G. 1996. The role of a conserved water molecule in the redox-dependent thermal stability of iso-1-cytochrome c. J. Biol. Chem.271, 29088-29093.
    • (1996) J. Biol. Chem. , vol.271 , pp. 29088-29093
    • Lett, C.M.1    Berghuis, A.M.2    Frey, H.E.3    Lepock, J.R.4    Guillemette, J.G.5
  • 21
    • 0028295613 scopus 로고
    • Water-mediated substrate/product discrimination: The product complex of thymidylate synthase at 1.83 Å
    • Fauman E.B., Rutenber E.E., Maley G.F., Maley F., Stroud R.M. 1994. Water-mediated substrate/product discrimination: The product complex of thymidylate synthase at 1.83 Å. Biochemistry.33, 1502-1511.
    • (1994) Biochemistry. , vol.33 , pp. 1502-1511
    • Fauman, E.B.1    Rutenber, E.E.2    Maley, G.F.3    Maley, F.4    Stroud, R.M.5
  • 22
    • 0034024888 scopus 로고    scopus 로고
    • A "structural" water molecule in the family of fatty acid binding proteins
    • Likic V.A., Juranic N., Macura S., Prendergast F.G. 2000. A "structural" water molecule in the family of fatty acid binding proteins. Protein Sci.9, 497-504.
    • (2000) Protein Sci. , vol.9 , pp. 497-504
    • Likic, V.A.1    Juranic, N.2    Macura, S.3    Prendergast, F.G.4
  • 23
    • 2942641889 scopus 로고    scopus 로고
    • Cluster analysis of water molecules in alanine racemase and their putative structural role
    • Mustata G., Briggs J.M. 2004. Cluster analysis of water molecules in alanine racemase and their putative structural role. Protein Eng. Des. Sel.17, 2232-2234.
    • (2004) Protein Eng. Des. Sel. , vol.17 , pp. 2232-2234
    • Mustata, G.1    Briggs, J.M.2
  • 24
    • 36549026743 scopus 로고    scopus 로고
    • The role of water in homeodomain-DNA interaction
    • N. Kolchanov and R. Hofestaedt (Eds.), N.Y.: Springer Science + Business Media, Inc
    • Karyagina A., Ershova A., Spirin S., Alexeevski A. 2005. The role of water in homeodomain-DNA interaction. In: Bioinformatics of Genome Regulation and Structure. Eds Kolchanov N., Hofestaedt R. N.Y.: Springer Science + Business Media, Inc., pp. 247-257.
    • (2005) Bioinformatics of Genome Regulation and Structure. , pp. 247-257
    • Karyagina, A.1    Ershova, A.2    Spirin, S.3    Alexeevski, A.4
  • 25
    • 0028157348 scopus 로고
    • Mutagenesis supports water mediated recognition in the Trp repressor-operator system
    • Joachimiak A., Haran T.E., Sigler P.B. 1994. Mutagenesis supports water mediated recognition in the Trp repressor-operator system. EMBO J.13, 367-372.
    • (1994) EMBO J. , vol.13 , pp. 367-372
    • Joachimiak, A.1    Haran, T.E.2    Sigler, P.B.3
  • 26
    • 0036700781 scopus 로고    scopus 로고
    • Conserved water molecules in MHC class-I molecules and their putative structural and functional roles
    • Ogata K., Wodak S.J. 2002. Conserved water molecules in MHC class-I molecules and their putative structural and functional roles. Protein Eng.15, 697-705.
    • (2002) Protein Eng. , vol.15 , pp. 697-705
    • Ogata, K.1    Wodak, S.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.