Spatial genetic structure in continuous and fragmented populations of Pinus pinaster Aiton

Molecular Ecology

Volumn 18, Issue 22, 2009, Pages 4564-4576

  De Lucas, A I ^a   GonzAlez MartInez S C ^b   Vendramin, G G ^c   Hidalgo, E ^a   Heuertz, M ^b,d  

^a UNIVERSIDAD DE VALLADOLID   (Spain)

^b Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria   (Spain)

^c CNR Istituto di Genetica Vegetale   (Italy)

^d UNIVERSITÉ LIBRE DE BRUXELLES   (Belgium)

Author keywords

Forest fragmentation; Genetic diversity; Iberian Peninsula; Pinus; Spatial genetic structure

Indexed keywords

MICROSATELLITE DNA; PLANT DNA;

ARTICLE; BIOLOGICAL MODEL; ECOSYSTEM; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; MOLECULAR EVOLUTION; PINE; POPULATION DENSITY; POPULATION DYNAMICS; POPULATION GENETICS; SPAIN; STATISTICAL MODEL;

DNA, PLANT; ECOSYSTEM; EVOLUTION, MOLECULAR; GENETIC VARIATION; GENETICS, POPULATION; LINEAR MODELS; MICROSATELLITE REPEATS; MODELS, GENETIC; PINUS; POPULATION DENSITY; POPULATION DYNAMICS; SELECTION, GENETIC; SPAIN;

CONIFEROPHYTA; PINUS PINASTER;

EID: 70350754507     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04372.x     Document Type: Article

References (74)

1. Aguilar R, Quesada M, Ashworth L, Herrerias-Diego Y, Lobo J (2008) Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches. Molecular Ecology, 17, 5177 5188.
2. Austerlitz F, Dick CW, Dutech C et al. (2004) Using genetic markers to estimate the pollen dispersal curve. Molecular Ecology, 13, 937 954.
3. Bacles CFE, Ennos RA (2008) Paternity analysis of pollen-mediated gene flow for Fraxinus excelsior L. in a chronically fragmented landscape. Heredity, 101, 368 380.
4. Bacles CFE, Lowe AJ, Ennos RA (2006) Effective seed dispersal across a fragmented landscape. Science, 311, 628.
5. Barbará T, Lexer C, Martinelli G et al. (2008) Within-population spatial genetic structure in four naturally fragmented plant species of a neotropical 'inselberg' radiation, Alcantarea imperialis, A. geniculata, A. glaziouana, and A. regina (Bromeliaceae). Heredity, 101, 285 296.
6. Bittencourt JVM, Sebbenn AM (2007) Patterns of pollen and seed dispersal in a small, fragmented population of the wind-pollinated tree Araucaria angustifolia in southern Brazil. Heredity, 99, 580 591.
7. Bladé C, Vallejo VR (2008) Seed mass effects on performance of Pinus halepensis Mill. seedlings sown after fire. Forest Ecology and Management, 255, 2362 2372.
8. Born C, Hardy OJ, Chevallier M-H et al. (2008) Small-scale spatial genetic structure in the Central African rainforest tree species Aucoumea klaineana: a stepwise approach to infer the impact of limited gene dispersal, population history and habitat fragmentation. Molecular Ecology, 17, 2041 2050.
9. Brookfield JFY (1996) A simple new method for estimating null allele frequency from heterozygote deficiency. Molecular Ecology, 5, 453 455.
10. Bucci G, González-Martínez SC, Le Provost G et al. (2007) Range-wide phylogeography and genetic zones in Pinus pinaster Ait. revealed by chloroplast microsatellite markers. Molecular Ecology, 16, 2137 2153.
11. Burban C, Petit RJ (2003) Phylogeography of maritime pine inferred with organelle markers having contrasted inheritance. Molecular Ecology, 12, 1487 1495.
12. Calvo L, Santalla S, Valbuena L et al. (2008) Post-fire natural regeneration of a Pinus pinaster forest in NW Spain. Plant Ecology, 197, 81 90.
13. Carrión JS, Navarro C, Navarro J, Munuera M (2000) The distribution of cluster pine (Pinus pinaster) in Spain as derived from palaeoecological data: relationships with phytosociological classification. The Holocene, 10, 243 252.
14. Chagné D, Chaumeil P, Ramboer A et al. (2004) Cross-species transferability and mapping of genomic and cDNA SSRs in pines. Theoretical and Applied Genetics, 109, 1204 1214.
15. Crawford TJ (1984) The estimation of neighbourhood parameters for plant populations. Heredity, 53, 273 283.
16. Derory J, Mariette S, González-Martínez SC et al. (2002) What can nuclear microsatellites tell us about maritime pine genetic resources conservation and provenance certification strategies? Annals of Forest Science, 59, 699 708.
17. Dick CW, Etchelecu G, Austerlitz F (2003) Pollen dispersal of tropical trees (Dinizia excelsa: Fabaceae) by native insects and African honeybees in pristine and fragmented Amazonian rainforest. Molecular Ecology, 12, 753 764.
18. Dick CW, Hardy OJ, Jones FA, Petit RJ (2008) Spatial scales of pollen and seed-mediated gene flow in tropical rain forest trees. Tropical Plant Biology, 1, 20 33.
19. Doligez A, Baril C, Joly HI (1998) Fine-scale spatial genetic structure with nonuniform distribution of individuals. Genetics, 148, 905 919.
20. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. BRL Focus, 12, 13 15.
21. Dunphy BL, Hamrick JL (2007) Estimation of gene flow into fragmented populations of Bursera simarouba (Burseraceae) in the dry-forest life zone of Puerto Rico. American Journal of Botany, 94, 1786 1794.
22. El-Kassaby YA, Jaquish B (1996) Population density and mating pattern in western larch. The Journal of Heredity, 87, 438 443.
23. Epperson B (1990) Spatial autocorrelation of genotypes under directional selection. Genetics, 124, 757 771.
24. Figueiral I (1995) Charcoal analysis and the history of Pinus pinaster (cluster pine) in Portugal. Review of Palaeobotany and Palynology, 89, 441 454. (Pubitemid 3009372)
25. Gapare WJ, Aitken SN (2005) Strong spatial genetic structure in peripheral but not core populations of Sitka spruce [Picea sitchensis (Bong.) Carr.]. Molecular Ecology, 14, 2659 2667.
26. Gérard P, Klein E, Austerlitz F et al. (2006) Assortative mating and differential male mating success in an ash hybrid zone population. BMC Evolutionary Biology, 6, 96.
27. González-Martínez SC, Salvador L, Agúndez D, Alía R, Gil L (2001) Geographical variation of gene diversity of Pinus pinaster Ait. in the Iberian Peninsula. In : Genetic Response of Forest System to Changing Environmental Condition (eds MullerStark G, Schubert R pp. 161 171. Kluwer Academic Publisher, Dordrecht.
28. González-Martínez SC, Gerber S, Cervera MT et al. (2002) Seed gene flow and fine-scale structure in a Mediterranean pine (Pinus pinaster Ait.) using nuclear microsatellite markers. Theoretical and Applied Genetics, 104, 1290 1297.
29. González-Martínez SC, Burczyk J, Nathan R et al. (2006) Effective gene dispersal and female reproductive success in Mediterranean maritime pine (Pinus pinaster Aiton). Molecular Ecology, 15, 4577 4588.
30. Hampe A, Petit J (2005) Conserving biodiversity under climate change: the rear edge matters. Ecology Letters, 8, 461 467.
31. Hardy OJ, Vekemans X (2002) SPAGEDI: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618 620. http://www.ebe.ulb.ac.be/ebe/Software.html [accessed 21 September 2009].
32. Hardy OJ, Maggia L, Bandou E et al. (2006) Fine-scale genetic structure and gene dispersal inferences in 10 neotropical tree species. Molecular Ecology, 15, 559 571.
33. Heuertz M, Vekemans X, Hausman F, Paladas M, Hardy OJ (2003) Estimating seed vs. pollen dispersal from spatial genetic structure in the common ash. Molecular Ecology, 12, 2483 2495.
34. Jump AS, Peñuelas J (2006) Genetic effects of chronic habitat fragmentation in a wind-pollinated tree. Proceedings of the National Academy of Sciences of the United States of America, 103, 8096 8100.
35. Kalinowski ST (2005) HP-RARE 1.0: a computer program for performing rarefaction on measures of allelic richness. Molecular Ecology Notes, 5, 187 189. http://www.montana.edu/kalinowski/Software/HPRare.htm [accessed 21 September 2009].
36. Kimmel M, Chakraborty R, King JP et al. (1998) Signatures of population expansion in microsatellite repeat data. Genetics, 148, 1921 1930.
37. Kramer AT, Ison JL, Ashley MV, Howe HF (2008) The paradox of forest fragmentation genetics. Conservation Biology, 22, 878 885.
38. Loiselle BA, Sork VL, Nason J, Graham C (1995) Spatial genetic structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae). American Journal of Botany, 82, 1420 1425.
39. Lowe AJ, Boshier D, Ward M, Bacles CFE, Navarro C (2005) Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical trees. Heredity, 95, 255 273.
40. de-Lucas AI, Robledo-Arnuncio JJ, Hidalgo E, González- Martínez SC (2008) Mating system and pollen gene flow in Mediterranean maritime pine. Heredity, 100, 390 399.
41. de-Lucas AI, González-Martínez SC, Hidalgo E, Bravo F, Heuertz M (2009) Admixture, one-source colonization or long-term persistence of maritime pine in the Castilian Plateau? Insights from nuclear microsatellite markers. Investigacion Agraria: Sistemas y Recursos Forestales, 18, 3 12.
42. Mariette S, Chagné D, Decroocq S et al. (2001) Microsatellite markers for Pinus pinaster Ait. Annals of Forest Science, 58, 203 206.
43. Mimura M, Aitken SN (2007) Increase selfing and decrease effective pollen donor number in peripheral relative to central populations of Picea sitchensis (Pinaceae). American Journal of Botany, 94, 991 998.
44. Muller-Landau HC, Wright SJ, Calderón O, Condit R, Hubbell SP (2008) Interspecific variation in primary seed dispersal in a tropical forest. Journal of Ecology, 96, 653 667.
45. Nason JD, Hamrick JL (1997) Reproductive and genetic consequences of forest fragmentation: two case studies of neotropical canopy trees. Journal of Heredity, 88, 264 276.
46. Nathan R, Safriel UN, Noy-Meir I, Schiller G (2000) Spatiotemporal variation in seed dispersal and recruitment near and far from Pinus halepensis trees. Ecology, 81, 2156 2169.
47. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89, 583 590.
48. Nei M, Maruyana T, Chakraborty R (1975) The bottleneck effect and genetic variability in populations. Evolution, 29, 1 10.
49. O'Connell LM, Mosseler A, Rajora OP (2006) Impacts of forest fragmentation on the mating system and genetic diversity of white spruce (Picea glauca) at the landscape level. Heredity, 97, 418 426.
50. Petit RJ, Aguinagalde I, de Beaulieu JL et al. (2003) Glacial refuges: hotspots but not melting pots of genetic diversity. Science, 300, 1563 1565.
51. Pritchard JK, Wen W (2004) Documentation for STRUCTURE software version 2. http://pritch.bsd.uchicago.edu [accessed 21 September 2009].
52. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945 959.
53. Ribeiro MM, Plomion C, Petit R, Vendramin GG, Szmidt AE (2001) Variation in chloroplast single-sequence repeats in Portuguese maritime pine (Pinus pinaster Ait.). Theoretical and Applied Genetics, 102, 97 103.
54. Robledo-Arnuncio JJ, Alía R, Gil L (2004) Increased selfing and correlated paternity in a small population of a predominantly outcrossing conifer, Pinus sylvestris. Molecular Ecology, 13, 2567 2577.
55. Robledo-Arnuncio JJ, Austerlitz F, Smouse PE (2006) A new indirect method of estimating the pollen dispersal curve, independently of effective density. Genetics, 173, 1033 1045.
56. Rousset F (2000) Genetic differentiation between individuals. Journal of Evolutionary Biology, 13, 58 62.
57. Rousset F (2004) Genetic Structure and Selection in Subdivided Populations. Princeton University Press, Princeton, NJ.
58. RoyChoudhury A, Stephens M (2007) Fast and accurate estimation of the population-scaled mutation rate, θ, from microsatellite genotype data. Genetics, 176, 1363 1366.
59. Salvador L, Alía R, Agúndez D, Gil L (2000) Genetic variation and migration pathways of maritime pine (Pinus pinaster Ait.) in the Iberian peninsula. Theoretical and Applied Genetics, 100, 89 95.
60. Slatkin M (1973) Gene flow and selection in a cline. Genetics, 75, 733 756.
61. Smouse PE, Sork VL (2004) Measuring pollen flow in forest trees: an exposition of alternative approaches. Forest Ecology and Management, 197, 21 38.
62. Sokal RR, Wartenberg DE (1983) A test of spatial autocorrelation using an isolation-by-distance model. Genetics, 105, 219 237.
63. Streiff R, Ducousso A, Lexer C et al. (1999) Pollen dispersal inferred from paternity analysis in a mixed oak stand of Quercus robur L. and Q. petraea (Matt.) Liebl. Molecular Ecology, 8, 831 841.
64. Thompson JD (2005) Plant Evolution in the Mediterranean. Oxford University Press, Oxford.
65. Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes, 4, 535 538. http://www. microchecker.hull.ac.uk/ [accessed 21 September 2009]
66. Van Rossum F, Triest L (2007) Fine-scale spatial genetic structure of the distylous Primula veris in fragmented habitats. Plant Biology, 9, 374 382.
67. Vekemans X, Hardy J (2004) New insights from fine-scale spatial genetic structure analyses in plant populations. Molecular Ecology, 13, 921 935.
68. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
69. Wells G, Young AG (2002) Effects of seed dispersal on spatial genetic structure in populations of Rutidosis leptorrhychoides with different levels of correlated paternity. Genetical Research, 79, 219 226.
70. White GM, Boshier DH, Powell W (2002) Increased pollen flow counteracts fragmentation in a tropical dry forest: an example from Swietenia humilis Zuccarini. Proceedings of the National Academy of Sciences of the United States of America, 99, 2038 2042.
71. Williams DA, Wang Y, Borchetta M, Gaines MS (2007) Genetic diversity and spatial structure of a keystone species in fragmented pine rockland habitat. Biological Conservation, 138, 256 268.
72. Yamagishi H, Tomimatsu H, Ohara M (2007) Fine-scale spatial genetic structure within continuous and fragmented populations of Trillium camschatcense. Journal of Heredity, 98, 367 372.
73. Young AG, Merriam HG (1994) Effects of forest fragmentation on the spatial genetic structure of Acer saccharum Marsh (Sugar Maple) populations. Heredity, 72, 201 208.
74. Young AG, Boyle T, Brown AHD (1996) The population genetic consequences of habitat fragmentation for plants. Trends in Ecology and Evolution, 11, 413 418.