Shinella yambaruensis sp. nov., a 3-methy-sulfolane-assimilating bacterium isolated from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 3, 2009, Pages 536-539

  Matsui, Toru ^a   Shinzato, Naoya ^a,b   Tamaki, Hideyuki ^b   Muramatsu, Mizuho ^b   Hanada, Satoshi ^b  

^a UNIVERSITY OF THE RYUKYUS   (Japan)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

3 METHYL SULFOLANE; BACTERIAL RNA; RNA 16S; SULFUR; UBIDECARENONE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; DNA CONTENT; GENE SEQUENCE; GRAM NEGATIVE AEROBIC RODS AND COCCI; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SHINELLA YAMBARUENSIS; SOIL; TYPE STRAIN;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; MESYLATES; MOLECULAR SEQUENCE DATA; NITRATES; PHENOTYPE; PHYLOGENY; RHIZOBIACEAE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

BACTERIA (MICROORGANISMS); NEGIBACTERIA;

EID: 70350699351     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65510-0     Document Type: Article

References (17)

1. An, D.-S., Im, W.-T., Yang, H.-C. & Lee, S.-T. (2006). Shinella granuli gen. nov., sp. nov., and proposal of the reclassification of Zoogloea ramigera ATCC 19623 as Shinella zoogloeoides sp. nov. Int J Syst Evol Microbiol 56, 443-448.
2. Chambel, L, Chelo, I. M., Zé-Zé, L., Pedro, L G., Santos, M. A. & Tenreiro, R. (2006). Leuconostoc pseudoficulneum sp. nov., isolated from a ripe fig. Int J Syst Evol Microbiol 56, 1375-1381.
3. Choi, Y. J., Cho, K W., Cho, B. W. & Yeo, Y.-K. (2002). Optimization of the sulfolane extraction plant based on modeling and simulation. Ind Eng Chem Res 41, 5504-5509.
4. Fedorak, P. M. & Coy, D. L. (1996). Biodegradation of sulfolane in soil and groundwater samples from a sour gas plant site. Environ Technol 17, 1093-1102.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
6. Fitzgerald, K. J. & Richardson, J. A. (1966). How gas composition affects treating process selection. Hydrocarbon Proc 45, 127-130.
7. Greene, E. A. & Fedorak, P. M. (1998). A differential medium for the isolation and enumeration of sulfolane-degrading bacteria. J Microbiol Methods 33, 255-262.
8. Greene, E. A., Beatty, P. H. & Fedorak, P. M. (2000). Sulfolane degradation by mixed cultures and a bacterial isolate identified as a Variovorax sp. Arch Microbiol 174, 111-119.
9. Hanada, S., Takaichi, S., Matsuura, K. & Nakamura, K. (2002). Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosornes. Int J Syst Evol Microbiol 52, 187-193.
10. Hänninen, M. L, Happonen, L, Saari, S. & Jalava, K (1996), Culture and characteristics of Helicobacter bizzozeronii, a new canine gastric Helicobacter sp. Int J Syst Bacteriol 46, 160-166.
11. Kim, C. G., Clarke, W. P. & Lockington, D. (1999). Feasibility test of biological degradation of heterocyclic sulfur compounds in anaerobic state. J Environ Sci Health A Tox Hazard Subst Environ Eng A34, 899-918.
12. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative gtudies of nucleotide sequences. J Mol Evol 16, 111-120.
13. Matsui, T., Hirasawa, K, Konishi, J., Tanaka, Y., Maruhashi, K. & Kurane, R. (2001). Microbial desulfurization of alkylated dibenzothiophene and alkylated benzothiophene by recombinant Rhodococcus sp. strain T09. Appl Microbiol Biotechnol 56, 196-200.
14. Saint-Fort R. (2006). Sulfolane attenuation by surface and subsurface soil matrices. J Environ Sci Health A Tox Hazard Subst Environ Eng 41, 1211-1231.
15. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
16. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
17. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.