Quantitation of magnetic resonance spectroscopy signals: The jMRUI software package

Measurement Science and Technology

Volumn 20, Issue 10, 2009, Pages

  Stefan, D ^a   Cesare, F Di ^b   Andrasescu, A ^a   Popa, E ^b   Lazariev, A ^b   Vescovo, E ^c   Strbak, O ^d   Williams, S ^c   Starcuk, Z ^d   Cabanas, M ^e   Van Ormondt, D ^f   Graveron Demilly, D ^b  

^a Alter Systems   (France)

^b UNIVERSITÉ LYON 1   (France)

^c UNIVERSITY OF MANCHESTER   (United Kingdom)

^d INSTITUTE OF SCIENTIFIC INSTRUMENTS   (Czech Republic)

^e UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^f DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

Author keywords

HRMAS NMR; Java; JMRUI software package; MR spectroscopy; MRS; MRSI; Plug ins; Quantitation

Indexed keywords

COMPUTER SOFTWARE; GRAPHICAL USER INTERFACES; JAVA PROGRAMMING LANGUAGE; MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE; QUANTUM THEORY; SOFTWARE PACKAGES; SPECTROSCOPIC ANALYSIS; TIME DOMAIN ANALYSIS; USER INTERFACES;

HR-MAS NMR; JAVA; MR SPECTROSCOPY; MRSI; PLUG-INS; QUANTITATION;

MAGNETIC RESONANCE SPECTROSCOPY;

EID: 70350695845     PISSN: 09570233     EISSN: 13616501     Source Type: Journal    
DOI: 10.1088/0957-0233/20/10/104035     Document Type: Article

References (26)

1. Naressi A, Couturier C, Devos J M, Janssen M, Mangeat C, de Beer R and Graveron-Demilly D 2001 Java-based graphical user interface for the MRUI quantitation package Magn. Reson. Mater. Phys. 12 141-52
2. Naressi A, Couturier C, Castang I, de Beer R and Graveron-Demilly D 2001 Java-based graphical user interface for MRUI, a software package for quantitation of in vivo medical magnetic resonance spectroscopy signals Comput. Biol. Med. 31 269-86
3. Barkhuijsen H, de Beer R and van Ormondt D 1987 Improved algorithm for noniterative time-domain model fitting to exponentially damped magnetic resonance signals J. Magn. Reson. 73 553-7
4. de Beer R and van Ormondt D 1992 Analysis of NMR data using time domain fitting procedures NMR Basic Principles and Progress vol 26 (Berlin: Springer) pp 202-48
5. Pijnappel W W F, van den Boogaart A, de Beer R and van Ormondt D 1992 SVD-based quantification of magnetic resonance signals J. Magn. Reson. 97 122-34
6. Van Huffel S, Chen H, Decanniere C and Van Hecke P 1994 Algorithm for time-domain NMR data fitting based on total least squares J. Magn. Reson. A 110 228-37
7. Barkhuijsen H, de Beer R, Bovée W M M J and van Ormondt D 1985 Retrieval of frequencies, amplitudes, damping factors and phases from time-domain signals using a linear least-squares procedure J. Magn. Reson. 61 465-81
8. Vanhamme L, van den Boogaart A and Van Huffel S 1997 Improved method for accurate and efficient quantification of MRS data with use of prior knowledge J. Magn. Reson. 129 35-43
9. 1H short echo-time signals: background accommodation Magn. Reson. Mater. Phys. 16 284-96
10. Ratiney H, Sdika M, Coenradie Y, Cavassila S, van Ormondt D and Graveron-Demilly D 2005 Time-domain semi-parametric estimation based on a metabolite basis set NMR Biomed. 18 1-13
11. 31PNMR signals using the variable projection method and prior knowledge Magn. Reson. Med. 6 92-8
12. Vanhamme L, Fierro L, Van Huffel S and de Beer R 1998 Fast removal of residual water in proton spectra J. Magn. Reson. 132 197-203
13. Laudadio T, Mastronardi N, Vanhamme L, Van Hecke P and Van Huffel S 2002 Improved Lanczos algorithms for blackbox MRS data quantitation J. Magn. Reson. 157 292-7
14. Antoine J-P, Coron A and Dereppe J-M 2000 Water peak suppression: time-frequency versus time-scale approach J. Magn. Reson. 143 189-94
15. Diop A, Briguet A and Graveron-Demilly D 1992 Automatic in vivo NMR data processing based on an enhancement procedure and linear prediction method Magn. Reson. Med. 27 318-28
16. Cavassila S, Fenet B, van den Boogaart A, Rémy C, Briguet A and Graveron-Demilly D 1997 ER-Filter: a preprocessing technique for frequency-selective time-domain analysis Magn. Reson. Anal. 3 87-92
17. Antoine J-P, Coron A and Chauvin C 2001 Wavelets and related techniques in magnetic resonance spectroscopy NMR Biomed. 14 265-70
18. Cavassila S, Deval S, Huegen C, van Ormondt D and Graveron-Demilly D 2000 Cramér-Rao bound expressions for parametric estimation of overlapping spectral components. Influence of prior knowledge J. Magn. Reson. 143 311-20
19. Cavassila S, Deval S, Huegen C, van Ormondt D and Graveron-Demilly D 2001 Cramér-Rao bounds: a tool for quantitation objectives NMR Biomed. 14 278-83
20. Cavassila S, van Ormondt D and Graveron-Demilly D 2001 Cramér-Rao bound analysis of spectroscopic signal processing methods Signal Processing for Magnetic Resonance Imaging and Spectroscopy ed Hong Yan (New York: Dekker) chapter 22
21. van den Bos A 2007 Parameter Estimation for Scientist and Engineers (New York: Wiley)
22. Graveron-Demilly D, Diop A, Briguet A and Fenet B 1993 Product-operator algebra for strongly coupled spin systems J. Magn. Reson. A 101 233-9
23. van den Boogaart A, Cavassila S, Vanhamme L, Totz J and Van Hecke P 1996 A complete software package for MR signal processing 18th Ann. Int. Conf. IEEE Engineering Medical and Biological Society (Amsterdam, The Netherlands)
24. Govindaraju V, Young K and Maudsley A A 2000 Proton NMR chemical shifts and coupling constants for brain metabolites NMR Biomed. 13 129-53
25. Ratiney H, Capobianco E, Sdika M, Rabeson H, Cudalbu C, Cavassila S, de Beer R, van Ormondt D and Graveron-Demilly D 2005 Semiparametric estimation in in vivo MR spectroscopy ProRISC, IEEE Benelux (Veldhoven, The Netherlands, November) pp 658-67
26. Gottschalk M, Lamalle L and Segebarth C 2008 Short-TE localised H-1 MRS of the human brain at 3 T: quantification of the metabolite signals using two approaches to account for macromolecular signal contributions NMR Biomed. 21 507-17