-
1
-
-
3242889975
-
Replacing Suffix Trees with Enhanced Suffix Arrays
-
Abouelhoda, M.I., Kurtz, S., Ohlebusch, E.: Replacing Suffix Trees with Enhanced Suffix Arrays. Journal of Discrete Algorithms 2(1), 53-86 (2004)
-
(2004)
Journal of Discrete Algorithms
, vol.2
, Issue.1
, pp. 53-86
-
-
Abouelhoda, M.I.1
Kurtz, S.2
Ohlebusch, E.3
-
2
-
-
84958752641
-
-
Abouelhoda, M.I., Ohlebusch, E., Kurtz, S.: Optimal Exact String Matching Based on Suffix Arrays. In: Laender, A.H.F., Oliveira, A.L. (eds.) SPIRE 2002. LNCS, 2476, pp. 31-43. Springer, Heidelberg (2002)
-
Abouelhoda, M.I., Ohlebusch, E., Kurtz, S.: Optimal Exact String Matching Based on Suffix Arrays. In: Laender, A.H.F., Oliveira, A.L. (eds.) SPIRE 2002. LNCS, vol. 2476, pp. 31-43. Springer, Heidelberg (2002)
-
-
-
-
3
-
-
0025183708
-
-
Altschul, S., Gish, W., Miller, W., Myers, E., Lipman, D.: A basic local alignment search tool. Journal of Molecular Biology 215(3), 403-410 (1990)4. Bloom, B.H.: Space/time trade-offs in hash coding with allowable errors. Communications of the ACM 13(7), 422-426 (1970)
-
Altschul, S., Gish, W., Miller, W., Myers, E., Lipman, D.: A basic local alignment search tool. Journal of Molecular Biology 215(3), 403-410 (1990)4. Bloom, B.H.: Space/time trade-offs in hash coding with allowable errors. Communications of the ACM 13(7), 422-426 (1970)
-
-
-
-
4
-
-
70450232823
-
Network applications of Bloom filters: A survey
-
Broder, A., Mitzenmacher, M.: Network applications of Bloom filters: A survey. Internet Mathematics 1(4), 636-646 (2003)
-
(2003)
Internet Mathematics
, vol.1
, Issue.4
, pp. 636-646
-
-
Broder, A.1
Mitzenmacher, M.2
-
5
-
-
0034538940
-
QuickCheck: A lightweight tool for random testing of Haskell programs
-
ACM Press, New York
-
Claessen, K., Hughes, J.: QuickCheck: a lightweight tool for random testing of Haskell programs. In: ACM SIGPLAN Notices, pp. 268-279. ACM Press, New York (2000)
-
(2000)
ACM SIGPLAN Notices
, pp. 268-279
-
-
Claessen, K.1
Hughes, J.2
-
6
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
Cloonan, N., Forrest, A.R.R., Kolle, G., Gardiner, B.B.A., Faulkner, G.J., Brown, M.K., Taylor, D.F., Steptoe, A.L., Wani, S., Bethel, G., Robertson, A.J., Perkins, A.C., Bruce, S.J., Lee, C.C., Ranade, S.S., Peckham, H.E., Manning, J.M., McKernan, K.J., Grimmond, S.M.: Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nature Methods 5(7), 613-619 (2008)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.R.2
Kolle, G.3
Gardiner, B.B.A.4
Faulkner, G.J.5
Brown, M.K.6
Taylor, D.F.7
Steptoe, A.L.8
Wani, S.9
Bethel, G.10
Robertson, A.J.11
Perkins, A.C.12
Bruce, S.J.13
Lee, C.C.14
Ranade, S.S.15
Peckham, H.E.16
Manning, J.M.17
McKernan, K.J.18
Grimmond, S.M.19
-
7
-
-
84887375084
-
-
Coutts, D., Stewart, D., Leshchinskiy, R.: Rewriting haskell strings. In: Hanus, M. (ed.) PADL 2007. LNCS, 4354, pp. 50-64. Springer, Heidelberg (2006)
-
Coutts, D., Stewart, D., Leshchinskiy, R.: Rewriting haskell strings. In: Hanus, M. (ed.) PADL 2007. LNCS, vol. 4354, pp. 50-64. Springer, Heidelberg (2006)
-
-
-
-
8
-
-
26944503580
-
Bloom filters in probabilistic verification
-
Hu, A.J, Martin, A.K, eds, FMCAD 2004, Springer, Heidelberg
-
Dillinger, P.C., Manolios, P.: Bloom filters in probabilistic verification. In: Hu, A.J., Martin, A.K. (eds.) FMCAD 2004. LNCS, vol. 3312, pp. 367-381. Springer, Heidelberg (2004)
-
(2004)
LNCS
, vol.3312
, pp. 367-381
-
-
Dillinger, P.C.1
Manolios, P.2
-
9
-
-
38549098540
-
The molecular biology database collection: 2008 update
-
Galperin, M.Y.: The molecular biology database collection: 2008 update. Nucleic Acids Research 36, D2-D4 (2008)
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Galperin, M.Y.1
-
10
-
-
0020484488
-
An improved algorithm for matching biological sequences
-
Gotoh, O.: An improved algorithm for matching biological sequences. Journal of Molecular Biology 162, 705-708 (1982)
-
(1982)
Journal of Molecular Biology
, vol.162
, pp. 705-708
-
-
Gotoh, O.1
-
11
-
-
0742268966
-
Space and time efficient parallel algorithms and software for EST clustering
-
Kalyanaraman, A., Aluru, S., Brendel, V., Kothari, S.: Space and time efficient parallel algorithms and software for EST clustering. IEEE Transactions on Parallel and Distributed Systems 14(12), 1209-1221 (2003)
-
(2003)
IEEE Transactions on Parallel and Distributed Systems
, vol.14
, Issue.12
, pp. 1209-1221
-
-
Kalyanaraman, A.1
Aluru, S.2
Brendel, V.3
Kothari, S.4
-
12
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent, W.J.: BLAT-the BLAST-like alignment tool. Genome Research 12(4), 656-664 (2002)
-
(2002)
Genome Research
, vol.12
, Issue.4
, pp. 656-664
-
-
Kent, W.J.1
-
13
-
-
33750722107
-
-
Kirsch, A., Mitzenmacher, M.: Less hashing, same performance: Building a better bloom filter. In: Azar, Y., Erlebach, T. (eds.) ESA 2006. LNCS, 4168, pp. 456-467. Springer, Heidelberg (2006)
-
Kirsch, A., Mitzenmacher, M.: Less hashing, same performance: Building a better bloom filter. In: Azar, Y., Erlebach, T. (eds.) ESA 2006. LNCS, vol. 4168, pp. 456-467. Springer, Heidelberg (2006)
-
-
-
-
15
-
-
0038494602
-
Fast sequence clustering using a suffix array algorithm
-
Malde, K., Coward, E., Jonassen, I.: Fast sequence clustering using a suffix array algorithm. Bioinformatics 19(10), 1221-1226 (2003)
-
(2003)
Bioinformatics
, vol.19
, Issue.10
, pp. 1221-1226
-
-
Malde, K.1
Coward, E.2
Jonassen, I.3
-
16
-
-
33748700612
-
RBR: Library-less repeat detection for ESTs
-
Malde, K., Schneeberger, K., Coward, E., Jonassen, I.: RBR: Library-less repeat detection for ESTs. Bioinformatics 22(18), 2232-2236 (2006)
-
(2006)
Bioinformatics
, vol.22
, Issue.18
, pp. 2232-2236
-
-
Malde, K.1
Schneeberger, K.2
Coward, E.3
Jonassen, I.4
-
17
-
-
0027681165
-
Suffix arrays: A new method for on-line string searches
-
Manber, U., Myers, G.: Suffix arrays: a new method for on-line string searches. SIAM Journal on Computing 22(5), 935-948 (1993)
-
(1993)
SIAM Journal on Computing
, vol.22
, Issue.5
, pp. 935-948
-
-
Manber, U.1
Myers, G.2
-
18
-
-
24044455869
-
-
Margulies, M, Egholm, M, Altman, W.E, Attiya, S, Bader, J.S, Berka, L.A.B.J, Braverman, M.S, Chen, Y.-J, Chen, Z, Dewell, S.B, Du, L, Fierro, J.M, Gomes, X.V, Godwin, B.C, He,W, Helgesen, S, Ho,C.H, Irzyk,G.P, Jando, S.C, Alenquer, M.L.I, Jarvie, T.P, Jirage, K.B, Kim, J.-B, Knight, J.R, Lanza, J.R, Leamon, J.H, Lefkowitz, S.M, Lei, M, Li, J, Lohman, K.L, Lu, H, Makhijani, V.B, McDade, K.E, McKenna, M.P, Myers2, E.W, Nickerson, E, Nobile, J.R, Plant, R, Puc, B.P, Ronan, M.T, Roth, G.T, Sarkis, G.J, Simons, J.F, Simpson, J.W, Srinivasan, M, Tartaro, K.R, Tomasz3, A, Vogt, K.A, Volkmer, G.A, Wang, S.H, Wang, Y, Weiner4, M.P, Yu, P, Begley, R.F, Rothberg, J.M, Genome sequencing in microfabricated high-density picolitre reactors. Nature 437(7057, 376-380 2005
-
Margulies, M., Egholm, M., Altman, W.E., Attiya, S., Bader, J.S., Berka, L.A.B.J., Braverman, M.S., Chen, Y.-J., Chen, Z., Dewell, S.B., Du, L., Fierro, J.M., Gomes, X.V., Godwin, B.C., He,W., Helgesen, S., Ho,C.H., Irzyk,G.P., Jando, S.C., Alenquer, M.L.I., Jarvie, T.P., Jirage, K.B., Kim, J.-B., Knight, J.R., Lanza, J.R., Leamon, J.H., Lefkowitz, S.M., Lei, M., Li, J., Lohman, K.L., Lu, H., Makhijani, V.B., McDade, K.E., McKenna, M.P., Myers2, E.W., Nickerson, E., Nobile, J.R., Plant, R., Puc, B.P., Ronan, M.T., Roth, G.T., Sarkis, G.J., Simons, J.F., Simpson, J.W., Srinivasan, M., Tartaro, K.R., Tomasz3, A., Vogt, K.A., Volkmer, G.A., Wang, S.H., Wang, Y., Weiner4, M.P., Yu, P., Begley, R.F., Rothberg, J.M.: Genome sequencing in microfabricated high-density picolitre reactors. Nature 437(7057), 376-380 (2005)
-
-
-
-
19
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman, S., Wunsch, C.: A general method applicable to the search for similarities in the amino acid sequence of two proteins. Journal of Molecular Biology 48(3), 443-453 (1970)
-
(1970)
Journal of Molecular Biology
, vol.48
, Issue.3
, pp. 443-453
-
-
Needleman, S.1
Wunsch, C.2
-
20
-
-
70350517904
-
Real World Haskell
-
ch. 25. O'Reilly Media, Sebastopol
-
O'Sullivan, B., Stewart, D., Goerzen, J.: Real World Haskell. In: Profiling and optimization, ch. 25. O'Reilly Media, Sebastopol (2008)
-
(2008)
Profiling and optimization
-
-
O'Sullivan, B.1
Stewart, D.2
Goerzen, J.3
-
22
-
-
26944467896
-
Illumina profile: Technology and assays
-
Steemers, F.J., Gunderson, K.L.: Illumina profile: technology and assays. Pharmacogenomics 6(7), 777-782 (2005)
-
(2005)
Pharmacogenomics
, vol.6
, Issue.7
, pp. 777-782
-
-
Steemers, F.J.1
Gunderson, K.L.2
-
23
-
-
0027494828
-
Discover 1: A new program to search for unusually represented DNA motifs
-
Valle, G.: Discover 1: a new program to search for unusually represented DNA motifs. Nucleic Acids Research 21(22), 5152-5156 (1993)
-
(1993)
Nucleic Acids Research
, vol.21
, Issue.22
, pp. 5152-5156
-
-
Valle, G.1
|