Triple-helix DNA structural studies using a Love wave acoustic biosensor

Biosensors and Bioelectronics

Volumn 25, Issue 4, 2009, Pages 702-707

  Papadakis, George ^a,b   Tsortos, Achilleas ^a   Gizeli, Electra ^a,b  

^a INSTITUTE OF MOLECULAR BIOLOGY AND BIOTECHNOLOGY   (Greece)

^b UNIVERSITY OF CRETE   (Greece)

Author keywords

DNA intrinsic viscosity; Love wave sensor; TFO; Triplex DNA

Indexed keywords

ACOUSTIC ENERGY; ACOUSTIC MEASUREMENTS; ACOUSTIC TECHNIQUES; BIOPHYSICAL STUDIES; CONFORMATIONAL CHANGE; DEGREE OF BENDING; DEVICE SURFACES; DNA BENDING; DNA MOLECULES; DNA TARGETS; DRUG DESIGN; GEOMETRICAL FEATURES; HIGH-THROUGHPUT METHOD; LOVE WAVE; LOVE WAVE SENSOR; MODEL SYSTEM; PHARMACEUTICAL INDUSTRY; PHASE CHANGE; QUANTITATIVE INFORMATION; STRUCTURAL STUDIES; TFO; TRIPLE HELICAL STRUCTURES; TRIPLEX DNA;

ACOUSTICS; BENDING (FORMING); BIOCHEMISTRY; BIOSENSORS; CONFORMATIONS; DNA; DRUG PRODUCTS PLANTS; MECHANICAL PROPERTIES; MOLECULAR BIOLOGY; MOLECULES; NUCLEIC ACIDS; VISCOSITY;

GENES;

CURVED DNA; DNA; OLIGONUCLEOTIDE;

ARTICLE; BIOSENSOR; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DNA BINDING; DNA CONFORMATION; DNA DETERMINATION; DNA HELIX; DNA STRUCTURE; DRUG DESIGN; DRUG INDUSTRY; EXPERIMENTAL MODEL; HIGH THROUGHPUT SCREENING; MOLECULAR BIOLOGY; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS;

ACOUSTICS; BIOSENSING TECHNIQUES; CRYSTALLOGRAPHY; DNA; EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; NUCLEIC ACID CONFORMATION; TRANSDUCERS;

EID: 70350622866     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2009.08.015     Document Type: Article

References (51)

1. Akiyama T., and Hogan M.E. Proc. Natl. Acad. Sci. U.S.A. 93 (1996) 12122-12127
2. Akiyama T., and Hogan M.E. Biochemistry 36 (1997) 2307-2315
3. Arnott S., and Selsing E. J. Mol. Biol. 88 (1974) 509-521
4. Ballantine D.S., White R.M., Martin S.J., Ricco A.J., Zellers E.T., Frye G.C., and Wohltjen H. Acoustic Wave Sensors (1997), Academic Press, San Diego, CA
5. Bednarski D., and Firestine S.M. Chembiochem 7 (2006) 1715-1721
6. Berman H.M. Curr. Opin. Struc. Biol. 1 (1991) 423-427
7. Bloomfield V.A., Crothers D., and Tinoco M.I. Nucleic Acids (2000), University Science Book, Sausalito, CA
8. Buck A.H., Campbell C.J., Dickinson P., Mountford C.P., Stoquert H.C., Terry J.G., Evans S.A.G., Keane L.M., Su T.-J., Mount A.R., Walton A.J., Beattie J.S., Crain J., and Ghazal P. Anal. Chem. 79 (2007) 4724-4728
9. Carmon K.S., Baltus R.E., and Luck L.A. Anal. Biochem. 345 (2005) 277-283
10. Cosnier S., and Mailley P. Analyst 133 (2008) 984-991
11. Darby R.A.J., Sollogoub M., McKeen C., Brown L., Risitano A., Brown N., Barton C., Brown T., and Fox K.R. Nucleic Acids Res. 30 (2002) e39
12. Dlakic M., and Kerppola T.K. Encyclopedia of Life Sciences (2001), Nature Publishing Group pp. 1-10
13. Drake T.J., and Tan W. Appl. Spectrosc. 58 (2004) 269A-280A
14. Escude C., and Sun J.S. Top. Curr. Chem. 253 (2005) 109-148
15. Faria M., and Giovannangeli C. J. Gene Med. 3 (2001) 299-310
16. Fox K.R. Curr. Med. Chem. 7 (2000) 17-37
17. Garcia de la Torre J., and Bloomfield V.A. Biopolymers 17 (1978) 1605-1627
18. Garcia de la Torre J., and Bloomfield V.A. Q. Rev. Biophys. 14 (1981) 81-139
19. Gizeli E. Anal. Chem. 72 (2000) 5967-5972
20. Hansma H.G., Revenko I., Kim K., and Laney D.E. Nucleic Acids Res. 24 (1996) 713-720
21. Jiang L., and Russu I.M. Biophys. J. 82 (2002) 3181-3185
22. Johannsmann D. Phys. Chem. Chem. Phys. 10 (2008) 4516-4534
23. Kalish J.M., Seidman M.M., Weeks D.L., and Glazer P.M. Nucleic Acids Res. 33 (2005) 3492-3502
24. Liberles D.A., and Dervan P.B. Proc. Natl. Acad. Sci. U.S.A. 93 (1996) 9510-9514
25. Liu K., Sasisekharan V., Miles H.T., and Raghunathan G. Biopolymers 39 (1996) 573-589
26. Maiti M., and Kumar G.S. Med. Res. Rev. 27 (2007) 649-695
27. MacMullen C., Mehta H., Gizeli E., and Lowe C. J. Phys. D: Appl. Phys. 33 (2000) 3053-3059
28. Mergny J.L., Collier D., Rougee M., Montenay-Garestier T., and Helene C. Nucleic Acids Res. 19 (1991) 1521-1526
29. Mitsakakis K., Tserepi A., and Gizeli E. J. Microelectromech. Syst. 17 (2008) 1010-1019
30. Mohan V., Smith P.E., and Pettitt B.M. J. Am. Chem. Soc. 115 (1993) 9297-9298
31. Nayak A., Khare P., Chourasia M.K., Silakari O., and Kohli D.V. Ind. J. Pharm. Sci. 68 (2006) 697-704
32. Olivas W.M., and Maher III L.J. Nucleic Acids Res. 24 (1996) 1758-1764
33. Pilch D.S., Waring M.J., Sun J.S., Rougee M., Nguyen C.H., Bisagni E., Garestier T., and Helene C. J. Mol. Biol. 232 (1993) 926-946
34. Radhakrishnan I., and Patel D.J. Biochemistry 33 (1994) 11405-11416
35. Reither S., and Jeltsch A. BMC Biochem. 3 (2002) 27-36
36. Saha K., Bender F., Rasmusson A., and Gizeli E. Langmuir 19 (2003) 1304-1311
37. Scaria P.V., and Shafer R.H. J. Biol. Chem. 266 (1991) 5417-5423
38. Seeman N.C. Trends Biochem. Sci. 30 3 (2005) 119-125
39. Seidman M.M., and Glazer P.M. J. Clin. Invest. 112 (2003) 487-494
40. Shields G.A., Laughton C.A., and Orozco M. J. Am. Chem. Soc. 119 (1997) 7463-7469
41. Stengel G., Hook F., and Knoll W. Anal. Chem. 77 (2005) 3709-3714
42. Su X., Wu Y., and Knoll W. Biosens. Bioelectron. 21 (2005) 719-726
43. Suh D., and Chaires J.B. Bioorg. Med. Chem. 3 (1995) 723-728
44. Tsortos A., Papadakis G., Mitsakakis K., Melzak K.A., and Gizeli E. Biophys. J. 94 (2008) 2706-2715
45. Tsortos A., Papadakis G., and Gizeli E. Biosens. Bioelectron. 24 (2008) 836-841
46. Tsortos A., Papadakis G., and Gizeli E. IEEE International Frequency Control Symposium. FCS, art. no. 4623017 (2008) 346-349 10.1109/FREQ.2008.4623017
47. Vasquez K.M., and Glazer P.M. Q. Rev. Biophys. 35 (2002) 89-107
48. Vercoutere W., and Akeson N. Curr. Opin. Chem. Biol. 6 (2002) 816-822
49. Voinova M.V., Rodahl M., Jonson M., and Kasemo B. Phys. Scr. 59 (1999) 391-396
50. Wang J.S., Ellis E.-L., Sundaram L.P., and Thompson M. Mol. Biosyst. 2 (2006) 184-192
51. Weerasinghe S., Smith P.E., Mohan V., Cheng Y.K., and Pettitt B.M. J. Am. Chem. Soc. 117 (1995) 2147-2158