메뉴 건너뛰기




Volumn 42, Issue 6, 2009, Pages 1035-1045

Integration of prostate cancer clinical data using an ontology

Author keywords

Data integration; Knowledge sharing; Ontology; Semantic heterogeneity

Indexed keywords

BIOMEDICAL DATA; CLINICAL DATA; DATA INTEGRATION; INTEGRATION PROCESS; KNOWLEDGE SHARING; PRIMARY SOURCES; PROOF OF CONCEPT; PROSTATE CANCERS; SEARCH AND RETRIEVAL; SEMANTIC HETEROGENEITY; SEMANTIC QUERY LANGUAGE;

EID: 70350574680     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2009.05.007     Document Type: Article
Times cited : (47)

References (47)
  • 1
    • 36849040551 scopus 로고    scopus 로고
    • Information management in distributed healthcare networks
    • Lenz R. Information management in distributed healthcare networks. Data Manage Conn World 3551 (2005) 315-334
    • (2005) Data Manage Conn World , vol.3551 , pp. 315-334
    • Lenz, R.1
  • 2
    • 0031958281 scopus 로고    scopus 로고
    • An integrated approach for a knowledge-based clinical workstation: architecture and experience
    • Brigl B., et al. An integrated approach for a knowledge-based clinical workstation: architecture and experience. Method Inform Med 37 1 (1998) 16-25
    • (1998) Method Inform Med , vol.37 , Issue.1 , pp. 16-25
    • Brigl, B.1
  • 3
    • 28844487453 scopus 로고    scopus 로고
    • An ontology approach to data integration
    • Buccella A., Cechich A., and Brisaboa N.R. An ontology approach to data integration. JCS&T 3 2 (2003) 62-68
    • (2003) JCS&T , vol.3 , Issue.2 , pp. 62-68
    • Buccella, A.1    Cechich, A.2    Brisaboa, N.R.3
  • 5
    • 16544376975 scopus 로고    scopus 로고
    • The Cancer Biomedical Informatics Grid (caBIG): pioneering an expansive network of information and tools for collaborative cancer research
    • Kakazu K.K., Cheung L.W., and Lynne W. The Cancer Biomedical Informatics Grid (caBIG): pioneering an expansive network of information and tools for collaborative cancer research. Hawaii Med J 63 9 (2004) 273-275
    • (2004) Hawaii Med J , vol.63 , Issue.9 , pp. 273-275
    • Kakazu, K.K.1    Cheung, L.W.2    Lynne, W.3
  • 7
    • 35148839490 scopus 로고
    • A translation approach to portable ontology specifications
    • Gruber T.R. A translation approach to portable ontology specifications. Knowl Acquis 5 2 (1993) 199-220
    • (1993) Knowl Acquis , vol.5 , Issue.2 , pp. 199-220
    • Gruber, T.R.1
  • 8
    • 17444371025 scopus 로고    scopus 로고
    • cited 2009 January, Available from
    • OWL. Web Ontology Language [cited 2009 January]. Available from: http://www.w3.org/TR/owl-features/.
    • Ontology Language
    • Web, O.W.L.1
  • 9
    • 84873174121 scopus 로고    scopus 로고
    • RDF, cited 2009 January, Available from
    • RDF. Resource Description Framework [cited 2009 January]. Available from: http://www.w3.org/TR/2004/REC-rdf-concepts-20040210/.
    • Resource Description Framework
  • 10
    • 0345863927 scopus 로고    scopus 로고
    • The Unified Medical Language System (UMLS): integrating biomedical terminology
    • Bodenreider O. The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res 32(Database issue) (2004) D267-D270
    • (2004) Nucleic Acids Res , vol.32 Database issue
    • Bodenreider, O.1
  • 11
    • 84874649461 scopus 로고    scopus 로고
    • NCBO, cited 2009 January, Available from
    • NCBO. National Center for Biomedical Ontology [cited 2009 January]. Available from: http://www.bioontology.org/.
    • National Center for Biomedical Ontology
  • 12
    • 70350568524 scopus 로고    scopus 로고
    • OBO. OBO [cited 2009 February]. Available from: http://obofoundry.org/.
    • OBO. OBO [cited 2009 February]. Available from: http://obofoundry.org/.
  • 13
    • 70350569673 scopus 로고    scopus 로고
    • cited 2009 January, Available from
    • CO. Cell Ontology [cited 2009 January]. Available from: http://obo.sourceforge.net/cgi-bin/detail.cgi?cell.
    • CO. Cell Ontology
  • 14
    • 33645277092 scopus 로고    scopus 로고
    • The MGED ontology: a resource for semantics-based description of microarray experiments
    • Whetzel P.L., et al. The MGED ontology: a resource for semantics-based description of microarray experiments. Bioinformatics 22 7 (2006) 866-873
    • (2006) Bioinformatics , vol.22 , Issue.7 , pp. 866-873
    • Whetzel, P.L.1
  • 15
    • 0842283371 scopus 로고    scopus 로고
    • A reference ontology for biomedical informatics: the Foundational Model of Anatomy
    • Rosse C., and Mejino Jr. J.L. A reference ontology for biomedical informatics: the Foundational Model of Anatomy. J Biomed Inform 36 6 (2003) 478-500
    • (2003) J Biomed Inform , vol.36 , Issue.6 , pp. 478-500
    • Rosse, C.1    Mejino Jr., J.L.2
  • 16
    • 33845512446 scopus 로고    scopus 로고
    • The national cancer institute's thesaurus and ontology
    • Golbeck J., et al. The national cancer institute's thesaurus and ontology. J Web Seman 1 (2003) 75-80
    • (2003) J Web Seman , vol.1 , pp. 75-80
    • Golbeck, J.1
  • 17
    • 33751431796 scopus 로고    scopus 로고
    • NCI thesaurus: a semantic model integrating cancer-related clinical and molecular information
    • Sioutos N., et al. NCI thesaurus: a semantic model integrating cancer-related clinical and molecular information. J Biomed Inform 40 1 (2007) 30-43
    • (2007) J Biomed Inform , vol.40 , Issue.1 , pp. 30-43
    • Sioutos, N.1
  • 18
    • 84872828578 scopus 로고    scopus 로고
    • OBI, cited 2009 January, Available from
    • OBI. The OBI Consortium [cited 2009 January]. Available from: http://purl.obofoundry.org/obo/obi.
    • The OBI Consortium
  • 19
    • 70350574461 scopus 로고    scopus 로고
    • cited 2009 January, Available from
    • BFO. Basic Formal Ontology [cited 2009 January]. Available from: http://ifomis.org/bfo/.
    • Formal Ontology
    • Basic, B.F.O.1
  • 20
    • 0242339595 scopus 로고    scopus 로고
    • Ontology-based information integration in the automotive industry
    • Maier A., Schnurr H.P., and Sure Y. Ontology-based information integration in the automotive industry. Seman Web - Iswc 2003 2870 (2003) 897-912
    • (2003) Seman Web - Iswc 2003 , vol.2870 , pp. 897-912
    • Maier, A.1    Schnurr, H.P.2    Sure, Y.3
  • 22
    • 70350573239 scopus 로고    scopus 로고
    • Available from
    • ACS Prostate Cancer Fact Sheets. 2008. Available from: http://www.cancer.org/downloads/PRO/ProstateCancer.pdf.
    • (2008) ACS Prostate Cancer Fact Sheets
  • 23
    • 0034879620 scopus 로고    scopus 로고
    • AJCC/TNM cancer staging, present and future
    • Fleming I.D. AJCC/TNM cancer staging, present and future. J Surg Oncol 77 4 (2001) 233-236
    • (2001) J Surg Oncol , vol.77 , Issue.4 , pp. 233-236
    • Fleming, I.D.1
  • 24
    • 41649087358 scopus 로고    scopus 로고
    • History of the FIGO cancer staging system
    • Odicino F., et al. History of the FIGO cancer staging system. Int J Gynaecol Obstet 101 2 (2008) 205-210
    • (2008) Int J Gynaecol Obstet , vol.101 , Issue.2 , pp. 205-210
    • Odicino, F.1
  • 25
    • 0036036947 scopus 로고    scopus 로고
    • Data integration: A theoretical perspective
    • Lenzerini M. Data integration: a theoretical perspective. In: PODS. 2002. p. 233-46.
    • (2002) PODS , pp. 233-246
    • Lenzerini, M.1
  • 27
    • 25444516519 scopus 로고    scopus 로고
    • GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environments
    • Kirov S.A., et al. GeneKeyDB: a lightweight, gene-centric, relational database to support data mining environments. BMC Bioinform 6 (2005) 72
    • (2005) BMC Bioinform , vol.6 , pp. 72
    • Kirov, S.A.1
  • 29
    • 0036937227 scopus 로고    scopus 로고
    • Data integration through database federation
    • Haas L.M., Lin E.T., and Roth M.A. Data integration through database federation. IBM Syst J 41 4 (2002) 578-596
    • (2002) IBM Syst J , vol.41 , Issue.4 , pp. 578-596
    • Haas, L.M.1    Lin, E.T.2    Roth, M.A.3
  • 31
    • 33644604851 scopus 로고    scopus 로고
    • CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks
    • Baumbach J., et al. CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks. BMC Genom 7 1 (2006) 24
    • (2006) BMC Genom , vol.7 , Issue.1 , pp. 24
    • Baumbach, J.1
  • 32
    • 34748888875 scopus 로고    scopus 로고
    • Using web ontology language to integrate heterogeneous databases in the neurosciences
    • Lam H.Y., et al. Using web ontology language to integrate heterogeneous databases in the neurosciences. AMIA Annu Symp Proc (2006) 464-468
    • (2006) AMIA Annu Symp Proc , pp. 464-468
    • Lam, H.Y.1
  • 33
    • 70350566426 scopus 로고    scopus 로고
    • D2RQ [cited 2009 January, Available from
    • D2RQ [cited 2009 January]. Available from: http://sites.wiwiss.fu-berlin.de/suhl/bizer/D2RQ/.
  • 34
    • 84885648243 scopus 로고    scopus 로고
    • cited 2009 January, Available from
    • D2R Server [cited 2009 January]. Available from: http://sites.wiwiss.fu-berlin.de/suhl/bizer/d2r-server/.
    • D2R Server
  • 35
    • 70350569672 scopus 로고    scopus 로고
    • SPARQL [cited 2009 January]. Available from: http://www.w3.org/TR/rdf-sparql-query/.
    • SPARQL [cited 2009 January]. Available from: http://www.w3.org/TR/rdf-sparql-query/.
  • 36
    • 84863602208 scopus 로고    scopus 로고
    • cited 2008 February, Available from
    • Protégé [cited 2008 February]. Available from: http://protege.standford.edu.
    • Protégé
  • 37
    • 70350566425 scopus 로고    scopus 로고
    • cited 2009 February, Available from
    • DataMaster [cited 2009 February]. Available from: http://protegewiki.stanford.edu/index.php/DataMaster.
    • DataMaster
  • 39
    • 70350567017 scopus 로고    scopus 로고
    • editor. Tools for acquisition, organisation and presenting of information and knowledge. Slovakia: Nizke Tatry;
    • Laclavik M. RDB2Onto: relational database data to ontology individuals mapping. In: Navrat P, et al. editor. Tools for acquisition, organisation and presenting of information and knowledge. Slovakia: Nizke Tatry; 2006.
    • (2006) RDB2Onto: Relational database data to ontology individuals mapping
    • Laclavik, M.1
  • 40
    • 0033575051 scopus 로고    scopus 로고
    • Cancer surveillance series: interpreting trends in prostate cancer-part I: evidence of the effects of screening in recent prostate cancer incidence, mortality, and survival rates
    • Hankey B.F., et al. Cancer surveillance series: interpreting trends in prostate cancer-part I: evidence of the effects of screening in recent prostate cancer incidence, mortality, and survival rates. J Nat Cancer Inst 91 12 (1999) 1017-1024
    • (1999) J Nat Cancer Inst , vol.91 , Issue.12 , pp. 1017-1024
    • Hankey, B.F.1
  • 41
    • 0037347574 scopus 로고    scopus 로고
    • Prostate cancer in black and white Americans
    • Reddy S., et al. Prostate cancer in black and white Americans. Cancer Metast Rev 22 1 (2003) 83-86
    • (2003) Cancer Metast Rev , vol.22 , Issue.1 , pp. 83-86
    • Reddy, S.1
  • 42
    • 0025737336 scopus 로고
    • Socioeconomic factors and cancer incidence among blacks and whites
    • Baquet C.R., et al. Socioeconomic factors and cancer incidence among blacks and whites. J Nat Cancer Inst 83 8 (1991) 551-557
    • (1991) J Nat Cancer Inst , vol.83 , Issue.8 , pp. 551-557
    • Baquet, C.R.1
  • 43
    • 0035819936 scopus 로고    scopus 로고
    • Racial and ethnic differences in advanced-stage prostate cancer: the Prostate Cancer Outcomes Study
    • Hoffman R.M., et al. Racial and ethnic differences in advanced-stage prostate cancer: the Prostate Cancer Outcomes Study. J Nat Cancer Inst 93 5 (2001) 388-395
    • (2001) J Nat Cancer Inst , vol.93 , Issue.5 , pp. 388-395
    • Hoffman, R.M.1
  • 44
    • 38849121229 scopus 로고    scopus 로고
    • A PATO-compliantzebrafish screening database (MODB): management of morpholino knockdown screen information
    • Knowlton M.N., et al. A PATO-compliantzebrafish screening database (MODB): management of morpholino knockdown screen information. BMC Bioinform 9 (2008) 7
    • (2008) BMC Bioinform , vol.9 , pp. 7
    • Knowlton, M.N.1
  • 45
    • 37849007693 scopus 로고    scopus 로고
    • CaCORE version 3: implementation of a model driven, service-oriented architecture for semantic interoperability
    • Komatsoulis G.A., et al. CaCORE version 3: implementation of a model driven, service-oriented architecture for semantic interoperability. J Biomed Inform 41 1 (2008) 106-123
    • (2008) J Biomed Inform , vol.41 , Issue.1 , pp. 106-123
    • Komatsoulis, G.A.1
  • 46
    • 0346252358 scopus 로고    scopus 로고
    • CaCORE: a common infrastructure for cancer informatics
    • Covitz P.A., et al. CaCORE: a common infrastructure for cancer informatics. Bioinformatics 19 18 (2003) 2404-2412
    • (2003) Bioinformatics , vol.19 , Issue.18 , pp. 2404-2412
    • Covitz, P.A.1
  • 47
    • 0346361658 scopus 로고    scopus 로고
    • The PROMPT suite: interactive tools for ontology merging and mapping
    • Noy N.F., and Musen M.A. The PROMPT suite: interactive tools for ontology merging and mapping. Intern J Hum-Comp Stud 59 6 (2003) 983-1024
    • (2003) Intern J Hum-Comp Stud , vol.59 , Issue.6 , pp. 983-1024
    • Noy, N.F.1    Musen, M.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.