Rhizosphere effects on soil bacterial abundance and diversity in the Yellow River Deltaic ecosystem as influenced by petroleum contamination and soil salinization

Soil Biology and Biochemistry

Volumn 41, Issue 12, 2009, Pages 2535-2542

  Nie, Ming ^a   Zhang, Xiao dong ^a   Wang, Jin qing ^a   Jiang, Li fen ^a   Yang, Ji ^a   Quan, Zhe xue ^b   Cui, Xin hong ^c   Fang, Chang ming ^a   Li, Bo ^a  

^a Beijing Normal University   (China)

^b FUDAN UNIVERSITY   (China)

^c Shanghai Institute of Landscape Gardening Science   (China)

Author keywords

Bacterial communities; Diversity; Petroleum contamination; Plant rhizosphere; Saline soil

Indexed keywords

BACTERIAL COMMUNITIES; DIVERSITY; PETROLEUM CONTAMINATION; PLANT RHIZOSPHERE; SALINE SOIL;

BACTERIOLOGY; CONTAMINATION; ECOSYSTEMS; HYDROCARBONS; PETROLEUM CHEMISTRY; RIVER POLLUTION; SALINE WATER; SALINITY MEASUREMENT; SOILS; WATER CONTENT;

SOIL POLLUTION;

ABUNDANCE; BACTERIUM; ECOSYSTEM FUNCTION; ENVIRONMENTAL STRESS; HUMAN ACTIVITY; PETROLEUM; RHIZOSPHERE; SALINIZATION; SOIL ECOSYSTEM; SOIL MICROORGANISM; SOIL POLLUTION; SOIL TYPE; SPECIES DIVERSITY;

ASIA; CHINA; EURASIA; FAR EAST; SHANDONG; YELLOW RIVER DELTA;

BACTERIA (MICROORGANISMS);

EID: 70350570548     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2009.09.012     Document Type: Article

References (52)

1. Alfaro A.C., Thomas F., Sergent L., and Duxbury M. Identification of trophic interactions within an estuarine food web (northern New Zealand) using fatty acid biomarkers and stable isotopes. Estuarine Coastal and Shelf Science 70 (2006) 271-286
2. Bais H.P., Weir T.L., Perry L.G., Gilroy S., and Vivanco J.M. The role of root exudates in rhizosphere interactions with plants and other organisms. Annual Review of Plant Biology 57 (2006) 233-266
3. Baran S., Bielinska J.E., and Oleszczuk P. Enzymatic activity in an airfield soil polluted with polycyclic aromatic hydrocarbons. Geoderma 118 (2004) 221-232
4. Becker J.M., Parkin T., Nakatsu C.H., Wilbur J.D., and Konopka A. Bacterial activity, community structure, and centimeter-scale spatial heterogeneity in contaminated soil. Microbial Ecology 51 (2006) 220-231
5. Berg G., and Smalla K. Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiology Ecology 68 (2009) 1-13
6. Burdick D., and Konisky R.A. Determinants of expansion for Phragmites australis, common reed, in natural and impacted coastal marshes. Estuaries 26 (2003) 407-416
7. Cai W.M. Land Use Changes and Its Sustainable Assessment in the Yellow River Delta (2004), College of Resources and Environmental Sciences. China Agricultural University, Beijing
8. Cordova-Kreylos A.L., Cao Y.P., Green P.G., Hwang H.M., Kuivila K.M., LaMontagne M.G., Van De Werfhorst L.C., Holden P.A., and Scow K.M. Diversity, composition, and geographical distribution of microbial communities in California salt marsh sediments. Applied and Environmental Microbiology 72 (2006) 3357-3366
9. Ehrenfeld J.G. Implications of invasive species for belowground community and nutrient. Weed Technology 18 (2004) 1232-1235
10. Fang H.L., Liu G.H., and Kearney M. Georelational analysis of soil type, soil salt content, landform, and land use in the Yellow River Delta, China. Environmental Management 35 (2005) 72-83
11. Grayston S.J., and Campbell C.D. Functional biodiversity of microbial communities in the rhizospheres of hybrid larch (Larix eurolepis) and Sitka spruce (Picea sitchensis). Tree Physiology 16 (1996) 1031-1038
12. Hu S.J., van Bruggen A.H.C., and Grunwald N.J. Dynamics of bacterial populations in relation to carbon availability in a residue-amended soil. Applied Soil Ecology 13 (1999) 21-30
13. Hu Y.C., and Schmidhalter U. Drought and salinity: a comparison of their effects on mineral nutrition of plants. Journal of Plant Nutrition and Soil Science - Zeitschrift Fur Pflanzenernahrung Und Bodenkunde 168 (2005) 541-549
14. Jones D.L., Hodge A., and Kuzyakov Y. Plant and mycorrhizal regulation of rhizodeposition. New Phytologist 163 (2004) 459-480
15. Katznelson H., Lochhead A.G., and Timonin M.I. Soil microorganisms and the rhizosphere. Botanical Review 14 (1948) 543-586
16. Klee A.J. Most Probable Number Calculator © Version 4.04 (1996), Environmental Protection Agency of United States, Cincinnati, OH
17. Kourtev P.S., Ehrenfeld J.G., and Haggblom M. Exotic plant species alter the microbial community structure and function in the soil. Ecology 83 (2002) 3152-3166
18. Labbé D., Margesin R., Schinner F., Whyte L.G., and Greer C.W. Comparative phylogenetic analysis of microbial communities in pristine and hydrocarbon-contaminated Alpine soils. FEMS Microbiology Ecology 59 (2007) 466-475
19. Lamontagne M.G., Leifer I., Bergmann S., Van De Werfhorst L.C., and Holden P.A. Bacterial diversity in marine hydrocarbon seep sediments. Environmental Microbiology 6 (2004) 799-808
20. Langenheder S., and Ragnarsson H. The role of environmental and spatial factors for the composition of aquatic bacterial communities. Ecology 88 (2007) 2154-2161
21. Lejon D.P.H., Sebastia J., Lamy I., Chaussod R., and Ranjard L. Relationships between soil organic status and microbial community density and genetic structure in two agricultural soils submitted to various types of organic management. Microbial Ecology 53 (2007) 650-663
22. Lepš J., and Šmilauer P. Multivariate Analysis of Ecological Data Using CANOCO (2003), Cambridge University Press, United Kingdom
23. Li H., Zhang Y., Zhang C.G., and Chen G.X. Effect of petroleum-containing wastewater irrigation on bacterial diversities and enzymatic activities in a paddy soil irrigation area. Journal of Environmental Quality 34 (2005) 1073-1080
24. Lissner J., and Schierup H.H. Effects of salinity on the growth of Phragmites australis. Aquatic Botany 55 (1997) 247-260
25. Liu W.X., Luo Y.M., Teng Y., Li Z.G., and Wu L.H. A survey of petroleum contamination in several Chinese oilfield soils. Soils 39 (2007) 247-251
26. Maila M.P., Randima P., Dronen K., and Cloete T.E. Soil microbial communities: influence of geographic location and hydrocarbon pollutants. Soil Biology & Biochemistry 38 (2006) 303-310
27. Manchanda G., and Garg N. Salinity and its effects on the functional biology of legumes. Acta Physiology Plant 30 (2008) 595-618
28. Marilley L., Vogt G., Blanc M., and Aragno M. Bacterial diversity in the bulk soil and rhizosphere fractions of Lolium perenne and Trifolium repens as revealed by PCR restriction analysis of 16S rDNA. Plant and Soil 198 (1998) 219-224
29. Milliman J.D., and Meade R.H. World-wide delivery of river sediment to the oceans. Journal of Geology 91 (1983) 1-21
30. Mummey D.L., and Rillig M.C. Spatial characterization of arbuscular mycorrhizal fungal molecular diversity at the submetre scale in a temperate grassland. FEMS Microbiology Ecology 64 (2008) 260-270
31. Munns R. Genes and salt tolerance: bringing them together. New Phytologist 167 (2005) 645-663
32. Muyzer G., Brinkhoff T., Nübel U., Santegoeds C., Schäfer H., and Wawer C. Denaturing Gradient Gel Electrophoresis (DGGE) in Microbial Ecology (1998), Kluwer Academic Publishers, Netherlands pp. 1-27
33. Nadim F., Liu S.L., Hoag G.E., Chen J.P., Carley R.J., and Zack P. A comparison of spectrophotometric and gas chromatographic measurements of heavy petroleum products in soil samples. Water Air and Soil Pollution 134 (2002) 97-109
34. Noaman M.N., and El-Haddad E.S. Effects of irrigation water salinity and leaching fraction on the growth of six halophyte species. Journal of Agricultural Science 135 (2000) 279-285
35. Osuji L.C., and Onojake C.M. Trace heavy metals associated with crude oil: a case study of Ebocha-8 oil-spill-polluted site in Niger Delta, Nigeria. Chemistry & Biodiversity 1 (2004) 1708-1715
36. 4 salinity on Phragmites australis. Aquatic Botany 90 (2009) 43-51
37. Phillips L.A., Greer C.W., and Germida J.J. Culture-based and culture-independent assessment of the impact of mixed and single plant treatments on rhizosphere microbial communities in hydrocarbon contaminated flare-pit soil. Soil Biology & Biochemistry 38 (2006) 2823-2833
38. Polymenakou P.N., Bertilsson S., Tselepides A., and Stephanou E.G. Links between geographic location, environmental factors, and microbial community composition in sediments of the Eastern Mediterranean Sea. Microbial Ecology 49 (2005) 367-378
39. Rangarajan S., Saleena L.M., and Nair S. Diversity of Pseudomonas spp. isolated from rice rhizosphere populations grown along a salinity gradient. Microbial Ecology 43 (2002) 280-289
40. Rowell M.J. The Effect of Crude-oil Spills on Soil: a Review of the Literature (1977), Department of Social Science, University of Alberta, Edmonton, Canada pp. 1-33
41. Saul D.J., Aislabie J.M., Brown C.E., Harris L., and Foght J.M. Hydrocarbon contamination changes the bacterial diversity of soil from around Scott Base, Antarctica. FEMS Microbiology Ecology 53 (2005) 141-155
42. Sey B.K., Manceur A.M., Whalen J.K., Gregorich E.G., and Rochette P. Small-scale heterogeneity in carbon dioxide, nitrous oxide and methane production from aggregates of a cultivated sandy-loam soil. Soil Biology & Biochemistry 40 (2008) 2468-2473
43. Stanley E.H., and Maxted J.T. Changes in the dissolved nitrogen pool across land cover gradients in Wisconsin streams. Ecological Applications 18 (2008) 1579-1590
44. Stapleton R.D., Sayler G.S., Boggs J.M., Libelo E.L., Stauffer T., and Macintyre W.G. Changes in subsurface catabolic gene frequencies during natural attenuation of petroleum hydrocarbons. Environmental Science & Technology 34 (2000) 1991-1999
45. van Hamme J.D., Singh A., and Ward O.P. Recent advances in petroleum microbiology. Microbiology and Molecular Biology Reviews 67 (2003) 503-549
46. Wenzel W.W. Rhizosphere processes and management in plant-assisted bioremediation (phytoremediation) of soils. Plant and Soil 321 (2009) 385-408
47. Westover K.M., Kennedy A.C., and Kelley S.E. Patterns of rhizosphere microbial community structure associated with co-occurring plant species. Journal of Ecology 85 (1997) 863-873
48. Whalley W.R., Riseley B., Leeds-Harrison P.B., Bird N.R.A., Leech P.K., and Adderley W.P. Structural differences between bulk and rhizosphere soil. European Journal of Soil Science 56 (2005) 353-360
49. Wrenn B.A., and Venosa A.D. Selective enumeration of aromatic and aliphatic hydrocarbon degrading bacteria by a most probable number procedure. Canadian Journal of Microbiology 42 (1996) 252-258
50. Zahran H.H. Diversity, adaptation and activity of the bacterial flora in saline environments. Biology and Fertility of Soils 25 (1997) 211-223
51. Zhao Y., and Song C. The Yellow River Delta National Nature Reserve (1995), Forestry Publishing House, Beijing, China
52. Ziesche T.M., and Roth M. Influence of environmental parameters on small-scale distribution of soil-dwelling spiders in forests: what makes the difference, tree species or microhabitat?. Forest Ecology and Management 255 (2008) 738-752