Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100 m depths) coral Leptoseris

BMC Ecology

Volumn 9, Issue , 2009, Pages

  Chan, Yvonne L ^a   Pochon, Xavier ^a   Fisher, Marla A ^b   Wagner, Daniel ^a   Concepcion, Gregory T ^a   Kahng, Samuel E ^c   Toonen, Robert J ^a   Gates, Ruth D ^a  

^a UNIVERSITY OF HAWAII   (United States)

^b UNIVERSITY OF HAWAII AT HILO   (United States)

^c HAWAII PACIFIC UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTHOZOA; DINOPHYCEAE; LEPTOSERIS; SYMBIODINIUM;

PROTOZOAL PROTEIN;

ANIMAL; ANTHOZOA; ARTICLE; CLASSIFICATION; DINOFLAGELLATE; DNA FINGERPRINTING; GENETIC VARIABILITY; GENETICS; GENOTYPE; METABOLISM; SYMBIOSIS;

ANIMALS; ANTHOZOA; DINOFLAGELLIDA; DNA FINGERPRINTING; GENETIC VARIATION; GENOTYPE; PROTOZOAN PROTEINS; SYMBIOSIS;

EID: 70350504855     PISSN: None     EISSN: 14726785     Source Type: Journal    
DOI: 10.1186/1472-6785-9-21     Document Type: Article

References (43)

1. Estimating the daily contribution of carbon from zooxanthellae to coral animal respiration. L Muscatine LR McCloskey RE Muscatine, Limnology and Oceanography 1981 26 601 611
2. Reef corals: mutualistic symbioses adapted to nutrient-poor environments. L Muscatine JW Porter, BioScience 1977 27 454 460 10.2307/1297526
3. Estimating the daily contribution of carbon from zooxanthellae to coral animal respiration. L Muscatine LR McCloskey RE Marian, Limnology and Oceanography 1981 26 601 611
4. Light harvesting by wavelength transformation in a symbiotic coral of the Red Sea twilight zone. D Schlichter HW Fricke W Weber, Marine Biology 1986 91 403 407 10.1007/BF00428634
5. Reef corals of Johnston Atoll: one of the world's most isolated reefs. JE Maragos P Jokiel, Coral Reefs 1986 4 141 150 10.1007/BF00427935
6. Vertical zonation of megabenthic taxa on a deep photosynthetic reef (50-140 m) in the Au'au Channel, Hawaii. SE Kahng CD Kelley, Coral Reefs 2007 26 679 687 10.1007/s00338-007-0253-7 (Pubitemid 350104773)
7. The deepest zooxanthellate, scleractinian corals in the world? SE Kahng JE Maragos, Coral Reefs 2006 24 254 10.1007/s00338-006-0098-5
8. In situ photobiology of corals over large depth ranges: A multivariate analysis on the roles of environment, host, and algal symbiont. PR Frade P Bongaerts AJS Winkelhagen L Tonk RPM Bak, Limnology and Oceanography 2008 53 2711 2723
9. Acclimation to spectral irradiance in algae. PG Falkowski J LaRoche, Journal of Phycology 1991 27 8 14 10.1111/j.0022-3646.1991.00008.x
10. Algal genotype and photoacclimatory responses of the symbiotic alga Symbiodinium in natural populations of the sea anemone Anemonia viridis. JC Bythell AE Douglas VA Sharp JB Searle BE Brown, Proceedings of the Royal Society B: Biological Sciences 1997 264 1277 1282 10.1098/rspb.1997.0176 (Pubitemid 27445224)
11. Acclimation and adaptation to irradiance in symbiotic dinoflagellates. II. Response of chlorophyll-protein complexes to different photon-flux densities. R Iglesias-Prieto R Trench, Marine Biology 1997 130 23 33 10.1007/s002270050221 (Pubitemid 28084499)
12. Genetic diversity of symbiotic dinoflagellates in the genus Symbiodinium. MA Coffroth SR Santos, Protist 2005 156 19 34 10.1016/j.protis.2005.02.004 16048130
13. Ribosomal RNA sequences and the diversity of symbiotic dinoflagellates (zooxanthellae). R Rowan DA Powers, Proceedings of the National Academy of Sciences 1992 89 3639 3643 10.1073/pnas.89.8.3639
14. Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium. X Pochon JI Montoya-Burgos B Stadelmann, Molecular Phylogenetics and Evolution 2006 38 20 30 10.1016/j.ympev.2005.04.028 15978847
15. Investigating the biodiversity, ecology, and phylogeny of endosymbiotic dinoflagellates in the genus Symbiodinium using the ITS region: in search of a "species" level marker. TC Lajeunesse, Journal of Phycology 2001 37 866 880 10.1046/j.1529-8817.2001.01031.x (Pubitemid 33017014)
16. Intraspecific diversity and ecological zonation in coral-algal symbiosis. R Rowan N Knowlton, Proceedings of the National Academy of Sciences of the United States of America 1995 92 2850 2853 10.1073/pnas.92.7.2850 7708736
17. Variation in symbiont distribution between closely related coral species over large depth ranges. PR Frade F De Jongh F Vermeulen J Van Bleijswijk RPM Bak, Molecular Ecology 2008 17 691 703 18179427
18. Acclimation and adaptation to irradiance in symbiotic dinoflagellates. I. Responses of the photosynthetic unit to changes in photon flux density. R Iglesias-Prieto R Trench, Marine Ecology Progress Series 1994 113 163 175 10.3354/meps113163
19. Algal genotype and photoacclimatory responses of the symbiotic alga Symbiodinium in natural populations of the sea anemone Anemonia viridis. JC Bythell AE Douglas VA Sharp JB Searle, Proceedings of the Royal Society B: Biological Sciences 1997 264 1277 1282 10.1098/rspb.1997.0176 (Pubitemid 27445224)
20. Specificity in communities of Symbiodinium in corals from Johnston Atoll. M Stat X Pochon ROM Cowie RD Gates, Marine Ecology Progress Series 2009 386 83 96 10.3354/meps08080
21. High diversity and host specificity observed among symbiotic dinoflagellates in reef coral communities from Hawaii. TC Lajeunesse DJ Thornhill EF Cox FG Stanton WK Fitt GW Schmidt, Coral Reefs 2004 23 596 603 10.1007/s00338-004-0428-4 (Pubitemid 40393778)
22. Different algal symbionts explain the vertical distribution of dominant reef corals in the eastern Pacific. R Iglesias-Prieto V Beltrn T Lajeunesse H Reyes-Bonilla P Thomé Proceedings of the Royal Society B: Biological Sciences 2004 271 1757 1763 10.1098/rspb.2004.2757 (Pubitemid 39107998)
23. Production and respiration in the Red Sea coral Stylophora pistillata as a function of depth. LR McCloskey L Muscatine, Proceedings of the Royal Society of London Series B, Biological Sciences 1984 222 215 230 10.1098/rspb.1984.0060
24. Photoecology of the coral Leptoseris fragilis in the Red Sea twilight zone (an experimental study by submersible). HW Fricke E Vareschi D Schlichter, Oecologia 1987 73 371 381 10.1007/BF00385253
25. Mechanisms of amplification of photosynthetically active radiation in the symbiotic deep-water coral Leptoseris fragilis. D Schlichter HW Fricke, Hydrobiologia 1991 216/217 389 394 10.1007/BF00026491
26. Heterotrophy in tropical Scleractinian corals. F Houlbreque C Ferrier-Pages, Biological Reviews 2009 84 1 17 10.1086/598251 19046402
27. Photoacclimation of Stylophora pistillata to light extremes: metabolism and calcification. T Mass S Einbinder E Brokovich N Shashar R Vago J Erez Z Dubinsky, Marine Ecology Progress Series 2007 334 93 102 10.3354/meps334093 (Pubitemid 46657912)
28. A perforated gastrovascular cavity in the symbiotic deep-water coral Leptoseris fragilis: a new strategy to optimize heterotrophic nutrition. D Schlichter, Helgoland Marine Research 1991 45 423 443 10.1007/BF02367177
29. Noncoding mitochondrial loci for corals. GT Concepcion M Medina RJ Toonen, Molecular Ecology Notes 2006 6 1208 1211 10.1111/j.1471-8286.2006.01493. x (Pubitemid 44807987)
30. Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). TL Shearer MJH van Oppen SL Romano G Worheide, Molecular Ecology 2002 11 2475 2487 10.1046/j.1365-294X.2002.01652.x 12453233
31. Corals of Hawaii. D Fenner, Honolulu, HI: Mutual Publishing 2005
32. High genetic diversity and relative specificity among Symbiodinium-like endosymbiotic dinoflagellates in soritid foraminiferans. X Pochon J Pawlowski L Zaninetti R Rowan, Marine Biology 2001 139 1069 1078 10.1007/s002270100674 (Pubitemid 34049858)
33. One-year survey of a single Micronesian reef reveals extraordinarily rich diversity of Symbiodinium types in soritid foraminifera. X Pochon L Garcia-Cuetos AC Baker E Castella J Pawlowski, Coral Reefs 2007 26 867 882 10.1007/s00338-007-0279-x (Pubitemid 350277561)
34. Convenient single-step, one tube purification of PCR products for direct sequencing. E Werle C Schneider M Renner M Volker W Fiehn, Nucleic Acids Research 1994 22 4354 4355 10.1093/nar/22.20.4354 7937169
35. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. TA Hall, Nucl Ac Symp Ser 1999 41 95 98
36. TCS: a computer program to estimate gene genealogies. M Clement D Posada KA Crandall, Molecular Ecology 2000 9 1657 1660 10.1046/j.1365-294x.2000.01020.x 11050560
37. Recognizing diversity in coral symbiotic dinoflagellate communities. AM Apprill RD Gates, Molecular Ecology 2007 16 1127 1134 10.1111/j.1365-294X.2006. 03214.x 17391401
38. Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates. D Thornhill TC Lajeunesse SR Santos, Molecular Ecology 2007 16 5326 5340 17995924
39. Structure and evolution of the rDNA internal transcribed spacer (ITS) region 2 in the symbiotic dinoflagellates (Symbiodinium, Dinophyta). RL Hunter TC Lajeunesse SR Santos, Journal of Phycology 2007 43 120 128 10.1111/j.1529-8817.2006.00309.x (Pubitemid 46232946)
40. The ITS2 Database II: homology modelling RNA structure for molecular systematics. C Selig M Wolf T Muller T Dandekar J Schultz, Nucleic Acids Research 2007 36 377 D380 10.1093/nar/gkm827 17933769
41. The internal transcribed spacer 2 database - a web server for (not only) low level phylogenetic analyses. J Schultz T Muller M Achtziger PN Seibel, Nucleic Acids Research 2006 34 704 707 10.1093/nar/gkl129 16845103
42. Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. PN Seibel T Müller T Dandekar M Wolf, BMC Res Notes 2008 1 91 18854023 10.1186/1756-0500-1-91
43. 4SALE-a tool for synchronous RNA sequence and secondary structure alignment and editing. PN Seibel T Muller T Dandekar J Schultz M Wolf, BMC Bioinformatics 2006 7 498 10.1186/1471-2105-7-498 17101042