Proteomic, functional and motif-based analysis of C-terminal Src kinase-interacting proteins

Proteomics

Volumn 9, Issue 21, 2009, Pages 4944-4961

  Yang, Guang ^a,b   Li, Qingrun ^a   Ren, Siyuan ^a,d   Lu, Xuefeng ^a,b   Fang, Longhou ^a,e   Zhou, Wenchao ^a,b   Zhang, Fan ^a,b   Xu, Feilai ^a,b   Zhang, Zhe ^a   Zeng, Rong ^a   Lottspeich, Friedrich ^c   Chen, Zhengjun ^a  

^a Shanghai Jiao Tong University Affiliated Sixth People s Hospital   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

^d TEMPLE UNIVERSITY   (United States)

^e UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

Cell biology; Protein complexes; Protein kinases; Protein protein interaction; Shotgun proteomics; Src homology type

Indexed keywords

PHOSPHOPEPTIDE; PROTEIN TYROSINE KINASE; PROTEIN TYROSINE PHOSPHATASE SHP; PROTEINASE ACTIVATED RECEPTOR 3;

ANIMAL CELL; ARTICLE; CARBOXY TERMINAL SEQUENCE; HUMAN; HUMAN CELL; IMMUNOFLUORESCENCE; LIQUID CHROMATOGRAPHY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION; PROTEOMICS; TANDEM MASS SPECTROMETRY; TIGHT JUNCTION;

AMINO ACID SEQUENCE; ANIMALS; CELL LINE; COMPUTATIONAL BIOLOGY; DOGS; HUMANS; PHOSPHORYLATION; PROTEIN BINDING; PROTEIN-TYROSINE KINASES; PROTEOME; PROTEOMICS;

EID: 70350458156     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200800762     Document Type: Article

References (56)

1. Yeatman, T. J., A renaissance for SRC. Nat. Rev. Cancer. 2004, 4, 470-480.
2. Thomas, S. M., Brugge, J. S., Cellular functions regulated by Src family kinases. Annu. Rev. Cell Dev. Biol. 1997, 13, 513-609.
3. Chong, Y. P., Mulhern, T. D., Cheng, H. C., C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK) - endogenous negative regulators of Src-family protein kinases. Growth Factors 2005, 23, 233-244.
4. Sicheri, F., Moarefi, I., Kuriyan, J., Crystal structure of the Src family tyrosine kinase Hck. Nature 1997, 385, 602-609. (Pubitemid 27087567)
5. Miller, M. A., Malik, I. A., Shenk, M. A., Steele, R. E., The Src/Csk regulatory circuit arose early in metazoan evolution. Oncogene 2000, 19, 3925-3930.
6. Kawabuchi, M., Satomi, Y., Takao, T., Shimonishi, Y. et al., Transmembrane phosphoprotein Cbp regulates the activities of Src-family tyrosine kinases. Nature 2000, 404, 999-1003. (Pubitemid 30243594)
7. Bergman, M., Joukov, V., Virtanen, I., Alitalo, K., Overexpressed Csk tyrosine kinase is localized in focal adhesions, causes reorganization of alpha v beta 5 integrin, and interferes with HeLa cell spreading. Mol. Cell. Biol. 1995, 15, 711-722.
8. Baumeister, U., Funke, R., Ebnet, K., Vorschmitt, H. et al., Association of Csk to VE-cadherin and inhibition of cell proliferation. EMBO J. 2005, 24, 1686-1695. (Pubitemid 40704979)
9. Cao, H., Courchesne, W. E., Mastick, C. C., A phosphotyrosine-dependent protein interaction screen reveals a role for phosphorylation of caveolin-1 on tyrosine 14: recruitment of C-terminal Src kinase. J. Biol. Chem. 2002, 277, 8771-8774. (Pubitemid 34952941)
10. Takeuchi, S., Takayama, Y., Ogawa, A., Tamura, K., Okada, M., Transmembrane phosphoprotein Cbp positively regulates the activity of the carboxyl-terminal Src kinase, Csk. J. Biol. Chem. 2000, 275, 29183-29186. (Pubitemid 32043785)
11. Sondhi, D., Cole, P. A., Domain interactions in protein tyrosine kinase Csk. Biochemistry 1999, 38, 11147-11155. (Pubitemid 29411606)
12. Imamoto, A., Soriano, P., Disruption of the csk gene, encoding a negative regulator of Src family tyrosine kinases, leads to neural tube defects and embryonic lethality in mice. Cell 1993, 73, 1117-1124. (Pubitemid 23180486)
13. Nada, S., Yagi, T., Takeda, H., Tokunaga, T. et al., Constitutive activation of Src family kinases in mouse embryos that lack Csk. Cell 1993, 73, 1125-1135. (Pubitemid 23180487)
14. Thomas, S. M., Soriano, P., Imamoto, A., Specific and redundant roles of Src and Fyn in organizing the cytoskeleton. Nature 1995, 376, 267-271.
15. Lowry, W. E., Huang, J., Ma, Y. C., Ali, S. et al., Csk, a critical link of g protein signals to actin cytoskeletal reorganization. Dev. Cell 2002, 2, 733-744. (Pubitemid 34650070)
16. Fang, L., Wang, Y., Du, D., Yang, G. et al., Cell polarity protein Par3 complexes with DNA-PK via Ku70 and regulates DNA double-strand break repair. Cell Res. 2007, 17, 100-116. (Pubitemid 46279234)
17. Jiang, L. Q., Feng, X., Zhou, W., Knyazev, P. G. et al., Csk-binding protein (Cbp) negatively regulates epidermal growth factor-induced cell transformation by controlling Src activation. Oncogene 2006, 25, 5495-5506. (Pubitemid 44344100)
18. Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567.
19. Yu, L. R., Zeng, R., Shao, X. X.,Wang, N. et al., Identification of differentially expressed proteins between human hepatoma and normal liver cell lines by two-dimensional electrophoresis and liquid chromatography-ion trap mass spectrometry. Electrophoresis 2000, 21, 3058-3068. (Pubitemid 30700737)
20. Tu, C. J., Dai, J., Li, S. J., Sheng, Q. H. et al., High-sensitivity analysis of human plasma proteome by immobilized isoelectric focusing fractionation coupled to mass spectrometry identification. J. Proteome Res. 2005, 4, 1265-1273. (Pubitemid 41208681)
21. Keshava Prasad, T. S., Goel, R., Kandasamy, K., Keerthikumar, S. et al., Human protein reference database - 2009 update. Nucleic Acids Res. 2009, 37, D767-D772.
22. Breitkreutz, B. J., Stark, C., Tyers, M., Osprey: a network visualization system. Genome Biol. 2003, 4, R22.
23. Songyang, Z., Shoelson, S. E., McGlade, J., Olivier, P. et al., Specific motifs recognized by the SH2 domains of Csk, 3BP2, fps/fes, GRB-2, HCP, SHC, Syk, and Vav. Mol. Cell. Biol. 1994, 14, 2777-2785. (Pubitemid 24108258)
24. Pawson, T., Specificity in signal transduction: from phosphotyrosine-SH2 domain interactions to complex cellular systems. Cell 2004, 116, 191-203. (Pubitemid 38167312)
25. Saito, K., Enya, K., Oneyama, C., Hikita, T., Okada, M., Proteomic identification of ZO-1/2 as a novel scaffold for Src/Csk regulatory circuit. Biochem. Biophys. Res. Commun. 2008, 366, 969-975.
26. Songyang, Z., Shoelson, S. E., Chaudhuri, M., Gish, G. et al., SH2 domains recognize specific phosphopeptide sequences. Cell 1993, 72, 767-778. (Pubitemid 23093884)
27. Li, L., Okura, M., Imamoto, A., Focal adhesions require catalytic activity of Src family kinases to mediate integrin-matrix adhesion. Mol. Cell. Biol. 2002, 22, 1203-1217. (Pubitemid 34094856)
28. Turner, C. E., Paxillin interactions. J. Cell. Sci. 2000, 113, 4139-4140.
29. Lin, D., Edwards, A. S., Fawcett, J. P., Mbamalu, G. et al., A mammalian PAR-3-PAR-6 complex implicated in Cdc42/Rac1 and aPKC signalling and cell polarity. Nat. Cell Biol. 2000, 2, 540-547. (Pubitemid 30707173)
30. Wang, Y., Du, D., Fang, L., Yang, G. et al., Tyrosine phosphorylated Par3 regulates epithelial tight junction assembly promoted by EGFR signaling. EMBO J. 2006, 25, 5058-5070. (Pubitemid 44658524)
31. Lemay, S., Davidson, D., Latour, S., Veillette, A., Dok-3, a novel adapter molecule involved in the negative regulation of immunoreceptor signaling. Mol. Cell. Biol. 2000, 20, 2743-2754. (Pubitemid 30183493)
32. Gonzalez-Mariscal, L., Betanzos, A., Nava, P., Jaramillo, B. E., Tight junction proteins. Prog. Biophys. Mol. Biol. 2003, 81, 1-44.
33. Stuart, R. O., Nigam, S. K., Regulated assembly of tight junctions by protein kinase C. Proc. Natl. Acad. Sci. USA 1995, 92, 6072-6076.
34. Meyer, T. N., Schwesinger, C., Ye, J., Denker, B. M., Nigam, S. K., Reassembly of the tight junction after oxidative stress depends on tyrosine kinase activity. J. Biol. Chem. 2001, 276, 22048-22055. (Pubitemid 37410867)
35. Lu, Y., Yu, Q., Liu, J. H., Zhang, J. et al., Src family protein-tyrosine kinases alter the function of PTEN to regulate phosphatidylinositol 3-kinase/AKT cascades. J. Biol. Chem. 2003, 278, 40057-40066. (Pubitemid 37248572)
36. Rush, J., Moritz, A., Lee, K. A., Guo, A. et al., Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. Nat. Biotechnol. 2005, 23, 94-101. (Pubitemid 41724631)
37. Amanchy, R., Kalume, D. E., Iwahori, A., Zhong, J., Pandey, A., Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC). J. Proteome Res. 2005, 4, 1661-1671. (Pubitemid 41464793)
38. Van Slyke, P., Coll, M. L., Master, Z., Kim, H. et al., Dok-R mediates attenuation of epidermal growth factor-dependent mitogen-activated protein kinase and Akt activation through processive recruitment of c-Src and Csk. Mol. Cell. Biol. 2005, 25, 3831-3841. (Pubitemid 40559587)
39. Li, S., Seitz, R., Lisanti, M. P., Phosphorylation of caveolin by src tyrosine kinases. The alpha-isoform of caveolin is selectively phosphorylated by v-Src in vivo. J. Biol. Chem. 1996, 271, 3863-3868. (Pubitemid 26069684)
40. Wallez, Y., Cand, F., Cruzalegui, F., Wernstedt, C. et al., Src kinase phosphorylates vascular endothelial-cadherin in response to vascular endothelial growth factor: identification of tyrosine 685 as the unique target site. Oncogene 2006, 15, 1067-1077. (Pubitemid 46272205)
41. Arbet-Engels, C., Tartare-Deckert, S., Eckhart, W., C-terminal Src kinase associates with ligand-stimulated insulin-like growth factor-I receptor. J. Biol. Chem. 1999, 274, 5422-5428. (Pubitemid 29109187)
42. Shah, K., Shokat, K. M., A chemical genetic screen for direct v-Src substrates reveals ordered assembly of a retrograde signaling pathway. Chem. Biol. 2002, 9, 35-47. (Pubitemid 34155863)
43. Wang, B., Lemay, S., Tsai, S., Veillette, A., SH2 domain-mediated interaction of inhibitory protein tyrosine kinase Csk with protein tyrosine phosphatase-HSCF. Mol. Cell. Biol. 2001, 21, 1077-1088. (Pubitemid 32114957)
44. Brdickova, N., Brdicka, T., Angelisova, P., Horvath, O. et al., LIME: a new membrane Raft-associated adaptor protein involved in CD4 and CD8 coreceptor signaling. J. Exp. Med. 2003, 198, 1453-1462. (Pubitemid 37467160)
45. Lu, Y., Brush, J., Stewart, T. A., NSP1 defines a novel family of adaptor proteins linking integrin and tyrosine kinase receptors to the c-Jun N-terminal kinase/stress-activated protein kinase signaling pathway. J. Biol. Chem. 1999, 274, 10047-10052. (Pubitemid 129518288)
46. Verbrugge, A., Rijkers, E. S., de Ruiter, T., Meyaard, L., Leukocyte-associated Ig-like receptor-1 has SH2 domain-containing phosphatase-independent function and recruits C-terminal Src kinase. Eur. J. Immunol. 2006, 36, 190-198. (Pubitemid 43116405)
47. Veillette, A., Thibaudeau, E., Latour, S., High expression of inhibitory receptor SHPS-1 and its association with protein-tyrosine phosphatase SHP-1 inmacrophages. J. Biol. Chem. 1998, 273, 22719-22728. (Pubitemid 28399844)
48. Sayos, J., Martinez-Barriocanal, A., Kitzig, F., Bellon, T., Lopez-Botet, M., Recruitment of C-terminal Src kinase by the leukocyte inhibitory receptor CD85j. Biochem. Biophys. Res. Commun. 2004, 324, 640-647. (Pubitemid 39345564)
49. Radel, C., Rizzo, V., Integrin mechanotransduction stimulates caveolin-1 phosphorylation and recruitment of Csk to mediate actin reorganization. Am. J. Physiol. Heart Circ. Physiol. 2005, 288, H936-H945. (Pubitemid 40139682)
50. Basuroy, S., Sheth, P., Kuppuswamy, D., Balasubramanian, S. et al., Expression of kinase-inactive c-Src delays oxidative stress-induced disassembly and accelerates calcium-mediated reassembly of tight junctions in the Caco-2 cell monolayer. J. Biol. Chem. 2003, 278, 11916-11924. (Pubitemid 36800164)
51. Sabath, E., Negoro, H., Beaudry, S., Paniagua, M. et al., Galpha12 regulates protein interactions within the MDCK cell tight junction and inhibits tight-junction assembly. J. Cell. Sci. 2008, 121, 814-824. (Pubitemid 351578117)
52. Chen, Y. H., Lu, Q., Goodenough, D. A., Jeansonne, B., Nonreceptor tyrosine kinase c-Yes interacts with occludin during tight junction formation in canine kidney epithelial cells. Mol. Biol. Cell 2002, 13, 1227-1237. (Pubitemid 34309618)
53. Taylor, S. J., Shalloway, D., An RNA-binding protein associated with Src through its SH2 and SH3 domains in mitosis. Nature 1994, 368, 867-871. (Pubitemid 24137753)
54. Ostareck-Lederer, A., Ostareck, D. H., Cans, C., Neubauer, G. et al., c-Src-mediated phosphorylation of hnRNP K drives translational activation of specifically silenced mRNAs. Mol. Cell. Biol. 2002, 22, 4535-4543. (Pubitemid 34620391)
55. Shen, Z., Batzer, A., Koehler, J. A., Polakis, P. et al., Evidence for SH3 domain directed binding and phosphorylation of Sam68 by Src. Oncogene 1999, 18, 4647-4653. (Pubitemid 29417739)
56. de Hoog, C. L., Foster, L. J., Mann, M., RNA and RNA binding proteins participate in early stages of cell spreading through spreading initiation centers. Cell 2004, 117, 649-662. (Pubitemid 38692530)