Development of a consensus microarray method for identification of some highly pathogenic viruses

Journal of Medical Virology

Volumn 81, Issue 11, 2009, Pages 1945-1950

  Kang, Xiao Ping ^a   Li, Yong Qiang ^a   Sun, Qing Ge ^a   Liu, Hong ^a   Zhu, Qing Yu ^a   Yang, Yin Hui ^a  

^a BEIJING INSTITUTE OF MICROBIOLOGY AND EPIDEMIOLOGY   (China)

Author keywords

Genus level; Microarray based detection; Probe design; Species level; Virus

Indexed keywords

VIRUS DNA;

ANIMAL TISSUE; ARTICLE; CELL CULTURE; CHIKUNGUNYA ALPHAVIRUS; CHINA; DENGUE VIRUS; DNA MICROARRAY; INFLUENZA VIRUS A H5N1; JAPANESE ENCEPHALITIS VIRUS; MOUSE; NONHUMAN; OLIGONUCLEOTIDE PROBE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TICK BORNE ENCEPHALITIS FLAVIVIRUS; VIRUS IDENTIFICATION; VIRUS ISOLATION; VIRUS VIRULENCE; YELLOW FEVER FLAVIVIRUS;

ANIMALS; BRAIN; CHIKUNGUNYA VIRUS; CHINA; CLINICAL LABORATORY TECHNIQUES; DENGUE VIRUS; ENCEPHALITIS VIRUS, JAPANESE; ENCEPHALITIS VIRUSES, TICK-BORNE; HUMANS; INFLUENZA A VIRUS, H5N1 SUBTYPE; MICE; MICROARRAY ANALYSIS; OLIGONUCLEOTIDE PROBES; SWINE; SWINE DISEASES; VIRUS DISEASES; YELLOW FEVER VIRUS;

AVIAN INFLUENZA VIRUS; CHIKUNGUNYA VIRUS; DENGUE VIRUS; JAPANESE ENCEPHALITIS VIRUS; SARS CORONAVIRUS; SUIDAE; TICK-BORNE ENCEPHALITIS VIRUS; YELLOW FEVER VIRUS;

EID: 70350443613     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21602     Document Type: Article

References (20)

1. Albrecht V, Chevallier A, Magnone V, Barbry P, Vandenbos F, Bongain A, Lefebvre JC, Giordanengo V. 2006. Easy and fast detection and genotyping of high-risk human papillomavirus by dedicated DNA microarrays. J Virol Methods 137:236-244. (Pubitemid 44425271)
2. Bohlander SK, Espinosa R III, Le Beau MM, Rowley JD, Diaz MO. 1992. A method for the rapid sequence-independent amplification of microdissected chromosomal material. Genomics 13:1322-1324.
3. Calvario A, Bozzi A, Scarasciulli M, Ventola C, Seccia R, Stomati D, Brancasi B. 2002. Herpes Consensus PCR test: A useful diagnostic approach to the screening of viral diseases of the central nervous system. J Clin Virol 5:S71-S78. (Pubitemid 34669904)
4. Casas JA, García-Ochoa F. 1999. Sophorolipid production by Candida bombicola: Medium composition and culture methods. J Biosci Bioeng 88:488-494. (Pubitemid 30000560)
5. Chang PC, Peck K. 2003. Design and assessment of a fast algorithm for identifying specific probes for human and mouse genes. Bioinformatics 19:1311-1317. (Pubitemid 36939807)
6. Chou CC, Lee TT, Chen CH, Hsiao HY, Lin YL, Ho MS, Yang PC, Peck K. 2006. Design of microarray probes for virus identification and detection of emerging viruses at the genus level. BMC Bioinform 7:232-236. (Pubitemid 44144638)
7. Coiras MT, Pérez-Brea P, García ML, Casas I. 2003. Simultaneous detection of influenza A, B, and C viruses, respiratory syncytial virus, and adenoviruses in clinical samples by multiplex reverse transcription nested-PCR assay. J Med Virol 69:132-144. (Pubitemid 35403665)
8. David W, Laurent C, Maxine Z, Pedro CA, Homer AB, Don G, Joseph LD. 2002. Microarray-based detection and genotyping of viral pathogens. Proc Natl Acad Sci 99:11569-15687.
9. David W, Urisman A, Liu YT, Springer M, Ksiazek TG, Erdman DD, Mardis ER, Hickenbotham M, Magrini V, Eldred J, Latreille JP, Wilson RK, Ganem D, Joseph LD. 2003. Viral discovery and sequence recovery using DNA microarrays. PLoS Biol 1:22-26. (Pubitemid 39112167)
10. Elnifro EM, Ashshi AM, Cooper RJ, Klapper PE. 2000. Multiplex PCR: Optimization and application in diagnostic virology. Clin Microbiol Rev 13:559-570. (Pubitemid 30782010)
11. Jehanara K, Noe S, Bruno L, Jean MC, Daniel GGV. 2005. DNA probe array for the simultaneous identification of herpesviruses, enteroviruses, and flaviviruses. J Clin Microbiol 43:3779-3787.
12. Kane MD, Jatkoe TA, Stumpf CR, Lu J, Thomas JD, Madore SJ. 2000. Assessment of the sensitivity and specificity of oligonucleotide (50 mer) microarrays. Nucleic Acids Res 28:4552-4557. (Pubitemid 30838254)
13. Kessler N, Ferraris O, Palmer K, Marsh W, Steel A. 2004. Use of the DNA flow-thru chip, a three-dimensional biochip, for typing and subtyping of influenza viruses. J Clin Microbiol 42:2173-2185. (Pubitemid 38637839)
14. Korimbocus J, Scaramozzino N, Lacroix B, Crance JM, Garin D, Vernet G. 2005. DNA probe array for the simultaneous identification of herpesviruses, enteroviruses, and flaviviruses. J Clin Microbiol 43:3779-3787. (Pubitemid 41129660)
15. Kostrzynska M, Bachand A. 2006. Application of DNA microarray technology for detection, identification, and characterization of food-borne pathogens. Can J Microbiol 52:1-8.
16. Lin B, Blaney KM, Malanoski AP, Ligler AG, Schnur JM, Metzgar D, Russell KL, Stenger DA. 2007. Using a resequencing microarray as a multiple respiratory pathogen detection assay. J Clin Microbiol 45:443-452. (Pubitemid 46272060)
17. Oh TJ, Kim CJ, Woo SK, Kim TS, Jeong DJ, Kim MS, Lee S, Cho HS, An S. 2004. Development and clinical evaluation of a highly sensitive DNA microarray for detection and genotyping of human papillomaviruses. J Clin Microbiol 42:3272-3280.
18. Ryabinin VA, Shundrin LA, Kostina EB, Laassri M, Chizhikov V, Shchelkunov SN, Chumakov K, Sinyakov AN. 2006. Microarray assay for detection and discrimination of Orthopoxvirus species. J Med Virol 78:1325-1340. (Pubitemid 44389344)
19. Sengupta S, Onodera K, Lai A, Melcher U. 2003. Molecular detection and identification of influenza viruses by oligonucleotide microarray hybridization. J Clin Microbiol 41:4542-4550. (Pubitemid 37259755)
20. Urisman A, Fischer KF, Chiu CY, Kistler AL, Beck S, Wang D, DeRisi JL. 2005. E-Predict: A computational strategy for species identification based on observed DNA microarray hybridization patterns. Genome Biol 6:R78-R84.