메뉴 건너뛰기




Volumn , Issue , 2009, Pages 79-82

Comparative assessment of DNA assemblers for assembling expressed sequence tags

Author keywords

Alternative splicing; Assembler; EST; Transcript

Indexed keywords

ALTERNATIVE SPLICING; ASPERGILLUS NIGER; ASSEMBLER; COMPARATIVE ASSESSMENT; CONTIGS; DATA SETS; ERROR RATE; EST; EXPRESSED SEQUENCE TAGS; GENE FINDING; PHANEROCHAETE CHRYSOSPORIUM; TRANSCRIPT;

EID: 70350413753     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/OCCBIO.2009.19     Document Type: Conference Paper
Times cited : (4)

References (11)
  • 1
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A (1999). CAP3: A DNA sequence assembly program. Genome Res 9:868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 5
    • 34547573469 scopus 로고    scopus 로고
    • ESTExplorer: An expressed sequence tag (EST) assembly and annotation platform
    • Web Server issue:W143-7
    • Nagaraj SH, Deshpande N, Gasser RB, Ranganathan S (2007) ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform. Nucleic Acids Res. 35 (Web Server issue):W143-7.
    • (2007) Nucleic Acids Res , vol.35
    • Nagaraj, S.H.1    Deshpande, N.2    Gasser, R.B.3    Ranganathan, S.4
  • 6
    • 0037790561 scopus 로고    scopus 로고
    • Efficient clustering of large EST data sets on parallel computers
    • Kalyanaraman A, Aluru S, Kothari S, Brendel V (2003) Efficient clustering of large EST data sets on parallel computers. Nucleic Acids Res. 31:2963-74.
    • (2003) Nucleic Acids Res , vol.31 , pp. 2963-2974
    • Kalyanaraman, A.1    Aluru, S.2    Kothari, S.3    Brendel, V.4
  • 8
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P. (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 10
    • 0036137277 scopus 로고    scopus 로고
    • DNA sequence quality trimming and vector removal
    • Chou HH and Holmes MH (2001). DNA sequence quality trimming and vector removal. Bioinformatics 17:1093-1104.
    • (2001) Bioinformatics , vol.17 , pp. 1093-1104
    • Chou, H.H.1    Holmes, M.H.2
  • 11
    • 2542601548 scopus 로고    scopus 로고
    • Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78
    • Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J, et al. (2004) Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat Biotechnol. 22:695-700.
    • (2004) Nat Biotechnol , vol.22 , pp. 695-700
    • Martinez, D.1    Larrondo, L.F.2    Putnam, N.3    Gelpke, M.D.4    Huang, K.5    Chapman, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.