Polyamine modulon in yeast-Stimulation of COX4 synthesis by spermidine at the level of translation

International Journal of Biochemistry and Cell Biology

Volumn 41, Issue 12, 2009, Pages 2538-2545

  Uemura, Takeshi ^a   Higashi, Kyohei ^a,b   Takigawa, Miki ^a   Toida, Toshihiko ^a   Kashiwagi, Keiko ^c   Igarashi, Kazuei ^a,b  

^a CHIBA UNIVERSITY   (Japan)

^b CHIBA UNIVERSITY   (Japan)

^c CHIBA INSTITUTE OF SCIENCE   (Japan)

Author keywords

COX4; Polyamine modulon; Ribosome shunting; Translation; Yeast

Indexed keywords

CYCLOOXYGENASE 4; CYTOCHROME C OXIDASE; ENHANCED GREEN FLUORESCENT PROTEIN; METHIONINE TRANSFER RNA; ORNITHINE DECARBOXYLASE; POLYAMINE; PROSTAGLANDIN SYNTHASE; RIBOSOME RNA; RNA 40S; SHORT HAIRPIN RNA; SPERMIDINE; UNCLASSIFIED DRUG;

5' UNTRANSLATED REGION; ARTICLE; CELL FREE SYSTEM; CELL GROWTH; CELL STIMULATION; CELL VIABILITY; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; ENZYME ACTIVATION; ENZYME SUBUNIT; ENZYME SYNTHESIS; FUNGAL GENETICS; GENE EXPRESSION REGULATION; NONHUMAN; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; RIBOSOME SUBUNIT; RNA STRUCTURE; RNA TRANSLATION; SACCHAROMYCES CEREVISIAE;

5' UNTRANSLATED REGIONS; ELECTRON TRANSPORT COMPLEX IV; HYDROXYMETHYL AND FORMYL TRANSFERASES; MUTATION; ORNITHINE DECARBOXYLASE; PROTEIN BIOSYNTHESIS; RIBOSOME SUBUNITS, SMALL, EUKARYOTIC; RIBOSOMES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SPERMIDINE;

ESCHERICHIA COLI; MAMMALIA; SACCHAROMYCES CEREVISIAE;

EID: 70350344714     PISSN: 13572725     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biocel.2009.08.010     Document Type: Article

References (50)

1. Atkins J.F., Lewis J.B., Anderson C.W., and Gesteland R.F. Enhanced differential synthesis of proteins in a mammalian cell-free system by addition of polyamines. J Biol Chem 250 (1975) 5688-5695
2. Babinger K., Hallmann A., and Schmitt R. Translational control of regA, a key gene controlling cell differentiation in Volvox carteri. Development 133 (2006) 4045-4051
3. Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72 (1976) 248-254
4. Chattopadhyay M.K., Tabor C.W., and Tabor H. Polyamine deficiency leads to accumulation of reactive oxygen species in a spe2Δ mutant of Saccharomyces cerevisiae. Yeast 23 (2006) 751-761
5. Cohen S.S. A guide to polyamines (1998), Oxford University Press, New York
6. Cunningham-Rundles S., and Maas W.K. Isolation, characterization, and mapping of Escherichia coli mutants blocked in the synthesis of ornithine decarboxylase. J Bacteriol 124 (1975) 791-799
7. 2 and cytochrome c peroxidase are located in the intermembrane space of yeast mitochondria. J Biol Chem 257 (1982) 13028-13033
8. Demeshkina N., Hirokawa G., Kaji A., and Kaji H. Novel activity of eukaryotic translocase, eEF2: dissociation of the 80S ribosome into subunits with ATP but not with GTP. Nucleic Acids Res 35 (2007) 4597-4607
9. Echandi G., and Algranati I.D. Defective 30S ribosomal particles in a polyamine auxotroph of Escherichia coli. Biochem Biophys Res Commun 67 (1975) 1185-1191
10. Fujii S., and Hitomi Y. New synthetic inhibitors of C1r, C1 esterase, thrombin, plasmin, kallikrein and trypsin. Biochim Biophys Acta 661 (1981) 342-345
11. Geier B.M., Schagger H., Ortwein C., Link T.A., Hagen W.R., Brandt U., et al. Kinetic properties and ligand binding of the eleven-subunit cytochrome-c oxidase from Saccharomyces cerevisiae isolated with a novel large-scale purification method. Eur J Biochem 227 (1995) 296-302
12. Gingras A.C., Raught B., and Sonenberg N. eIF4 initiation factors: effectors of mRNA recruitment to ribosomes and regulators of translation. Annu Rev Biochem 68 (1999) 913-963
13. Gustafsson L. The ATP pool in relation to the production of glycerol and heat during growth of the halotolerant yeast Debaryomyces hansenii. Arch Microbiol 120 (1979) 15-23
14. Hellen C.U., and Sarnow P. Internal ribosome entry sites in eukaryotic mRNA molecules. Genes Dev 15 (2001) 1593-1612
15. Higashi K., Kashiwagi K., Taniguchi S., Terui Y., Yamamoto K., Ishihama A., et al. Enhancement of +1 frameshift by polyamines during translation of polypeptide release factor 2 in Escherichia coli. J Biol Chem 281 (2006) 9527-9537
16. Igarashi K., and Kashiwagi K. Polyamine transport in bacteria and yeast. Biochem J 344 Pt 3 (1999) 633-642
17. Igarashi K., and Kashiwagi K. Polyamines: mysterious modulators of cellular functions. Biochem Biophys Res Commun 271 (2000) 559-564
18. Igarashi K., and Kashiwagi K. Polyamine modulon in Escherichia coli: genes involved in the stimulation of cell growth by polyamines. J Biochem 139 (2006) 11-16
19. Igarashi K., Kashiwagi K., Aoki R., Kojima M., and Hirose S. Comparative studies on the increase by polyamines of fidelity of protein synthesis in Escherichia coli and wheat germ cell-free systems. Biochem Biophys Res Commun 91 (1979) 440-448
20. Igarashi K., Kashiwagi K., Hamasaki H., Miura A., Kakegawa T., Hirose S., et al. Formation of a compensatory polyamine by Escherichia coli polyamine-requiring mutants during growth in the absence of polyamines. J Bacteriol 166 (1986) 128-134
21. Igarashi K., Kashiwagi K., Kishida K., Watanabe Y., Kogo A., and Hirose S. Defect in the split proteins of 30-S ribosomal subunits and under-methylation of 16-S ribosomal RNA in a polyamine-requiring mutant of Escherichia coli grown in the absence of polyamines. Eur J Biochem 93 (1979) 345-353
22. Igarashi K., Sugawara K., Izumi I., Nagayama C., and Hirose S. Effect of polyamines of polyphenylalanine synthesis by Escherichia coli and rat-liver ribosomes. Eur J Biochem 48 (1974) 495-502
23. Jelenc P.C., and Kurland C.G. Nucleoside triphosphate regeneration decreases the frequency of translation errors. Proc Natl Acad Sci USA 76 (1979) 3174-3178
24. Kashiwagi K., Yamaguchi Y., Sakai Y., Kobayashi H., and Igarashi K. Identification of the polyamine-induced protein as a periplasmic oligopeptide binding protein. J Biol Chem 265 (1990) 8387-8391
25. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
26. Maarse A.C., Van Loon A.P., Riezman H., Gregor I., Schatz G., and Grivell L.A. Subunit IV of yeast cytochrome c oxidase: cloning and nucleotide sequencing of the gene and partial amino acid sequencing of the mature protein. EMBO J 3 (1984) 2831-2837
27. Mamont P.S., Duchesne M.C., Grove J., and Bey P. Anti-proliferative properties of DL-α-difluoromethyl ornithine in cultured cells. A consequence of the irreversible inhibition of ornithine decarboxylase. Biochem Biophys Res Commun 81 (1978) 58-66
28. Maruyama T., Masuda N., Kakinuma Y., and Igarashi K. Polyamine-sensitive magnesium transport in Saccharomyces cerevisiae. Biochim Biophys Acta 1194 (1994) 289-295
29. Nishimura K., Okudaira H., Ochiai E., Higashi K., Kaneko M., Ishii I., et al. Identification of proteins whose synthesis is preferentially enhanced by polyamines at the level of translation in mammalian cells. Int J Biochem Cell Biol 41 (2009) 2251-2261
30. Pegg A.E. Polyamine metabolism and its importance in neoplastic growth and a target for chemotherapy. Cancer Res 48 (1988) 759-774
31. Pelham H.R., and Jackson R.J. An efficient mRNA-dependent translation system from reticulocyte lysates. Eur J Biochem 67 (1976) 247-256
32. Raj V.S., Tomitori H., Yoshida M., Apirakaramwong A., Kashiwagi K., Takio K., et al. Properties of a revertant of Escherichia coli viable in the presence of spermidine accumulation: increase in L-glycerol 3-phosphate. J Bacteriol 183 (2001) 4493-4498
33. Sambrook J., Fritsch E.F., and Maniatis T. In: Sambrook J., and Russell D.W. (Eds). Molecular cloning: a laboratory manual. 3rd ed. (2001), Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA 1.32-1.34
34. Schneider J.C., and Guarente L. The untranslated leader of nuclear COX4 gene of Saccharomyces cerevisiae contains an intron. Nucleic Acids Res 15 (1987) 3515-3529
35. i, mRNA and ribosomes. Biochem Biophys Res Commun 223 (1996) 544-548
36. Su X., and Dowhan W. Translational regulation of nuclear gene COX4 expression by mitochondrial content of phosphatidylglycerol and cardiolipin in Saccharomyces cerevisiae. Mol Cell Biol 26 (2006) 743-753
37. Suzuki T., Sadakata Y., Kashiwagi K., Hoshino K., Kakinuma Y., Shirahata A., et al. Overproduction of S-adenosylmethionine decarboxylase in ethylglyoxal-bis(guanylhydrazone)-resistant mouse FM3A cells. Eur J Biochem 215 (1993) 247-253
38. Tachihara K., Uemura T., Kashiwagi K., and Igarashi K. Excretion of putrescine and spermidine by the protein encoded by YKL174c (TPO5) in Saccharomyces cerevisiae. J Biol Chem 280 (2005) 12637-12642
39. Terui Y., Higashi K., Taniguchi S., Shigemasa A., Nishimura K., Yamamoto K., et al. Enhancement of the synthesis of RpoN, Cra, and H-NS by polyamines at the level of translation in Escherichia coli cultured with glucose and glutamate. J Bacteriol 189 (2007) 2359-2368
40. Uemura T., Kashiwagi K., and Igarashi K. Uptake of putrescine and spermidine by Gap1p on the plasma membrane in Saccharomyces cerevisiae. Biochem Biophys Res Commun 328 (2005) 1028-1033
41. Uemura T., Kashiwagi K., and Igarashi K. Polyamine uptake by DUR3 and SAM3 in Saccharomyces cerevisiae. J Biol Chem 282 (2007) 7733-7741
42. Watanabe S., Kusama-Eguchi K., Kobayashi H., and Igarashi K. Estimation of polyamine binding to macromolecules and ATP in bovine lymphocytes and rat liver. J Biol Chem 266 (1991) 20803-20809
43. 1/S transition through early S phase. J Biol Chem 274 (1999) 37070-37078
44. 28 subunit. J Biol Chem 276 (2001) 16289-16295
45. 38 subunit by suppression of an amber termination codon in the open reading frame. J Biol Chem 277 (2002) 37139-37146
46. Yoshida M., Kashiwagi K., Shigemasa A., Taniguchi S., Yamamoto K., Makinoshima H., et al. A unifying model for the role of polyamines in bacterial cell growth, the polyamine modulon. J Biol Chem 279 (2004) 46008-46013
47. Yoshida M., Meksuriyen D., Kashiwagi K., Kawai G., and Igarashi K. Polyamine stimulation of the synthesis of oligopeptide-binding protein (OppA) Involvement of a structural change of the Shine-Dalgarno sequence and the initiation codon AUG in OppA mRNA. J Biol Chem 274 (1999) 22723-22728
48. Yueh A., and Schneider R.J. Selective translation initiation by ribosome jumping in adenovirus-infected and heat-shocked cells. Genes Dev 10 (1996) 1557-1567
49. Yueh A., and Schneider R.J. Translation by ribosome shunting on adenovirus and hsp70 mRNAs facilitated by complementarity to 18S rRNA. Genes Dev 14 (2000) 414-421
50. Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31 (2003) 3406-3415