-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
33749079145
-
Pinniped phylogeny and a new hypothesis for their origin and dispersal
-
Arnason U., et al. Pinniped phylogeny and a new hypothesis for their origin and dispersal. Mol. Phylogenet. Evol. 41 (2006) 345-354
-
(2006)
Mol. Phylogenet. Evol.
, vol.41
, pp. 345-354
-
-
Arnason, U.1
-
4
-
-
17044418896
-
PCR-based approach to SINE isolation: simple and complex SINEs
-
Borodulina O.R., and Kramerov D.A. PCR-based approach to SINE isolation: simple and complex SINEs. Gene 349 (2005) 197-205
-
(2005)
Gene
, vol.349
, pp. 197-205
-
-
Borodulina, O.R.1
Kramerov, D.A.2
-
5
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17 (2000) 540-552
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
6
-
-
0028111607
-
Can SINEs: a family of tRNA-derived retroposons specific to the superfamily Canoidea
-
Coltman D.W., and Wright J.W. Can SINEs: a family of tRNA-derived retroposons specific to the superfamily Canoidea. Nucleic Acids Res. 22 (1994) 2726-2730
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2726-2730
-
-
Coltman, D.W.1
Wright, J.W.2
-
7
-
-
25144483275
-
A phylogeny of the Caniformia (order Carnivora) based on 12 complete protein-coding mitochondrial genes
-
Delisle I., and Strobeck C. A phylogeny of the Caniformia (order Carnivora) based on 12 complete protein-coding mitochondrial genes. Mol. Phylogenet. Evol. 37 (2005) 192-201
-
(2005)
Mol. Phylogenet. Evol.
, vol.37
, pp. 192-201
-
-
Delisle, I.1
Strobeck, C.2
-
9
-
-
70350251112
-
Carnivores (Carnivora)
-
Hedges S.B., and Kumar S. (Eds), Oxford University Press
-
Eizirik E., and Murphy W.J. Carnivores (Carnivora). In: Hedges S.B., and Kumar S. (Eds). The Timetree of Life (2009), Oxford University Press 504-507
-
(2009)
The Timetree of Life
, pp. 504-507
-
-
Eizirik, E.1
Murphy, W.J.2
-
10
-
-
33646237451
-
Automated scanning for phylogenetically informative transposed elements in rodents
-
Farwick A., et al. Automated scanning for phylogenetically informative transposed elements in rodents. Syst. Biol. 55 (2006) 936-948
-
(2006)
Syst. Biol.
, vol.55
, pp. 936-948
-
-
Farwick, A.1
-
11
-
-
55949119281
-
A total evidence phyogeny of the Arctoidea (Carnivora: Mammalia): relationships among basal taxa
-
Finarelli J.A. A total evidence phyogeny of the Arctoidea (Carnivora: Mammalia): relationships among basal taxa. J. Mammal. Evol. 15 (2008) 231-259
-
(2008)
J. Mammal. Evol.
, vol.15
, pp. 231-259
-
-
Finarelli, J.A.1
-
12
-
-
19044400807
-
Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships
-
Flynn J.J., Finarelli J.A., Zehr S., Hsu J., and Nedbal M.A. Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships. Syst. Biol. 54 (2005) 317-337
-
(2005)
Syst. Biol.
, vol.54
, pp. 317-337
-
-
Flynn, J.J.1
Finarelli, J.A.2
Zehr, S.3
Hsu, J.4
Nedbal, M.A.5
-
13
-
-
33748204460
-
Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene data sets
-
Fulton L., and Strobeck C. Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene data sets. Mol. Phylogenet. Evol. 41 (2006) 165-181
-
(2006)
Mol. Phylogenet. Evol.
, vol.41
, pp. 165-181
-
-
Fulton, L.1
Strobeck, C.2
-
14
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41 (1999) 95-98
-
(1999)
Nucl. Acids. Symp. Ser.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
15
-
-
38649115646
-
Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset
-
Higdon J.W., Bininda-Emonds O.R.P., Beck R.M.D., and Ferguson S.H. Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset. BMC Evol. Biol. 7 (2007) 216
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 216
-
-
Higdon, J.W.1
Bininda-Emonds, O.R.P.2
Beck, R.M.D.3
Ferguson, S.H.4
-
16
-
-
0028259764
-
Basicranial evidence for ursid affinity of the oldest pinnipeds
-
Hunt R.M., and Barnes L.G. Basicranial evidence for ursid affinity of the oldest pinnipeds. Proc. San Diego Soc. Nat. Hist. 29 (1994) 57-67
-
(1994)
Proc. San Diego Soc. Nat. Hist.
, vol.29
, pp. 57-67
-
-
Hunt, R.M.1
Barnes, L.G.2
-
17
-
-
0037100671
-
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh K., Misawa K., Kuma K., and Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30 (2002) 3059-3066
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
18
-
-
68049142320
-
Multiple alignment of DNA sequences with MAFFT
-
Katoh K., Asimenos G., and Toh H. Multiple alignment of DNA sequences with MAFFT. Methods Mol. Biol. 537 (2009) 39-64
-
(2009)
Methods Mol. Biol.
, vol.537
, pp. 39-64
-
-
Katoh, K.1
Asimenos, G.2
Toh, H.3
-
19
-
-
33750831582
-
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
-
Kohany O., Gentles A.J., Hankus L., and Jurka J. Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics 7 (2006) 474
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 474
-
-
Kohany, O.1
Gentles, A.J.2
Hankus, L.3
Jurka, J.4
-
20
-
-
33646255212
-
Retroposed elements as archives for the evolutionary history of placental mammals
-
Kriegs J.O., Churakov G., Kiefmann M., Jordan U., Brosius J., and Schmitz J. Retroposed elements as archives for the evolutionary history of placental mammals. PLoS Biol. 4 (2006) 537-544
-
(2006)
PLoS Biol.
, vol.4
, pp. 537-544
-
-
Kriegs, J.O.1
Churakov, G.2
Kiefmann, M.3
Jordan, U.4
Brosius, J.5
Schmitz, J.6
-
21
-
-
37549035420
-
Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes)
-
Art.-No.190
-
Kriegs J.O., et al. Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes). BMC Evol. Biol. 7 (2007) Art.-No.190
-
(2007)
BMC Evol. Biol.
, vol.7
-
-
Kriegs, J.O.1
-
22
-
-
0024695367
-
B2-like repetitive sequence in the genome of the American mink
-
Lavrent'eva M.V., Rivkin M.I., Shilov A.G., Kobets M.L., Rogozin I.B., and Serov O.L. B2-like repetitive sequence in the genome of the American mink. Dokl. Akad. Nauk. SSSR 307 (1989) 226-228
-
(1989)
Dokl. Akad. Nauk. SSSR
, vol.307
, pp. 226-228
-
-
Lavrent'eva, M.V.1
Rivkin, M.I.2
Shilov, A.G.3
Kobets, M.L.4
Rogozin, I.B.5
Serov, O.L.6
-
23
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
Lindblad-Toh K., et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature 438 (2005) 803-819
-
(2005)
Nature
, vol.438
, pp. 803-819
-
-
Lindblad-Toh, K.1
-
24
-
-
35848949073
-
Retroposed elements and their flanking regions resolve the evolutionary history of xenarthran mammals (Armadillos, anteaters, and sloths)
-
Möller-Krull M., et al. Retroposed elements and their flanking regions resolve the evolutionary history of xenarthran mammals (Armadillos, anteaters, and sloths). Mol. Biol. Evol. 24 (2007) 2573-2582
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 2573-2582
-
-
Möller-Krull, M.1
-
25
-
-
23944505784
-
A retroposon analysis of Afrotherian phylogeny
-
Nishihara H., Satta Y., Nikaido M., Thewissen J.G.M., Stanhope M.J., and Okada N. A retroposon analysis of Afrotherian phylogeny. Mol. Biol. Evol. 22 (2005) 1823-1833
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1823-1833
-
-
Nishihara, H.1
Satta, Y.2
Nikaido, M.3
Thewissen, J.G.M.4
Stanhope, M.J.5
Okada, N.6
-
26
-
-
8444221611
-
Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family Felidae as a species tree
-
Pecon-Slattery J., Wilkerson A.J.P., Murphy W.J., and O'Brien S.J. Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family Felidae as a species tree. Mol. Biol. Evol. 21 (2004) 2299-2309
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 2299-2309
-
-
Pecon-Slattery, J.1
Wilkerson, A.J.P.2
Murphy, W.J.3
O'Brien, S.J.4
-
27
-
-
36048982458
-
Initial sequence and comparative analysis of the cat genome
-
Pontius J.U., et al. Initial sequence and comparative analysis of the cat genome. Genome Res. 17 (2007) 1675-1689
-
(2007)
Genome Res.
, vol.17
, pp. 1675-1689
-
-
Pontius, J.U.1
-
28
-
-
33845737850
-
SINEs of progress: mobile element applications to molecular ecology
-
Ray D.A. SINEs of progress: mobile element applications to molecular ecology. Mol. Ecol. 16 (2007) 19-33
-
(2007)
Mol. Ecol.
, vol.16
, pp. 19-33
-
-
Ray, D.A.1
-
30
-
-
65549086637
-
A semi-aquatic Arctic mammalian carnivore from the Miocene epoch and origin of Pinnipedia
-
Rybczynski N., Dawson R.M., and Tedford R.H. A semi-aquatic Arctic mammalian carnivore from the Miocene epoch and origin of Pinnipedia. Nature 458 (2009) 1021-1024
-
(2009)
Nature
, vol.458
, pp. 1021-1024
-
-
Rybczynski, N.1
Dawson, R.M.2
Tedford, R.H.3
-
31
-
-
33744499714
-
Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of Pinnipedia: single origin with affinity to Musteloidea
-
Sato J.J., et al. Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of Pinnipedia: single origin with affinity to Musteloidea. Zoolog. Sci. 23 (2006) 125-146
-
(2006)
Zoolog. Sci.
, vol.23
, pp. 125-146
-
-
Sato, J.J.1
-
32
-
-
0035108258
-
SINE insetions in cladistic analyses and the phylogenetic affiliation of Tarsius bancanus to other primates
-
Schmitz J., Ohme M., and Zischler H. SINE insetions in cladistic analyses and the phylogenetic affiliation of Tarsius bancanus to other primates. Genetics 157 (2001) 777-784
-
(2001)
Genetics
, vol.157
, pp. 777-784
-
-
Schmitz, J.1
Ohme, M.2
Zischler, H.3
-
33
-
-
0030794201
-
Molecular evidence from retroposons that whales form a clade within even-toed ungulates
-
Shimamura M., et al. Molecular evidence from retroposons that whales form a clade within even-toed ungulates. Nature 388 (1997) 666-670
-
(1997)
Nature
, vol.388
, pp. 666-670
-
-
Shimamura, M.1
-
34
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (2006) 2688-2690
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
35
-
-
0004248459
-
-
Sinauer, Inc, Sunderland, MA
-
Swofford D.L. PAUP*. Phylogenetic Analysis using Parsimony, version 4.0b8 (2002), Sinauer, Inc, Sunderland, MA
-
(2002)
PAUP*. Phylogenetic Analysis using Parsimony, version 4.0b8
-
-
Swofford, D.L.1
-
36
-
-
33947573106
-
Specific chicken repeat 1 (CR1) retrotransposon insertion suggests phylogenetic affinity of rockfowls (genus Picathartes) to crows and ravens (Corvidae)
-
Treplin S., and Tiedemann R. Specific chicken repeat 1 (CR1) retrotransposon insertion suggests phylogenetic affinity of rockfowls (genus Picathartes) to crows and ravens (Corvidae). Mol. Phylogenet. Evol. 43 (2007) 328-337
-
(2007)
Mol. Phylogenet. Evol.
, vol.43
, pp. 328-337
-
-
Treplin, S.1
Tiedemann, R.2
-
37
-
-
28844501661
-
Short interspersed elements (SINEs) are a major source of canine genomic diversity
-
Wang W., and Kirkness E.F. Short interspersed elements (SINEs) are a major source of canine genomic diversity. Genome Res. 15 (2005) 1798-1808
-
(2005)
Genome Res.
, vol.15
, pp. 1798-1808
-
-
Wang, W.1
Kirkness, E.F.2
-
38
-
-
33746329328
-
Amphicticeps and Amphicynodon (Arctoidea, Carnivora) from Hsanda Gol Formation, central Mongolia, and phylogeny of basal arctoids with comments on zoogeography
-
Wang X.M., McKenna M.C., and Dashzeveg D. Amphicticeps and Amphicynodon (Arctoidea, Carnivora) from Hsanda Gol Formation, central Mongolia, and phylogeny of basal arctoids with comments on zoogeography. Am. Mus. Novit. 3483 (2005) 1-57
-
(2005)
Am. Mus. Novit.
, vol.3483
, pp. 1-57
-
-
Wang, X.M.1
McKenna, M.C.2
Dashzeveg, D.3
-
40
-
-
31344471014
-
Missing data and the design of phylogenetic analyses
-
Wiens J.J. Missing data and the design of phylogenetic analyses. J. Biomed. Inf. 39 (2006) 34-42
-
(2006)
J. Biomed. Inf.
, vol.39
, pp. 34-42
-
-
Wiens, J.J.1
|