Individual variation in rod absorbance spectra correlated with opsin gene polymorphism in sand goby (pomatoschistus minutus)

Journal of Experimental Biology

Volumn 212, Issue 21, 2009, Pages 3415-3421

  Jokela Määttä, Mirka ^a   Vartio, Annika ^a   Paulin, Lars ^a   Donner, Kristián ^b  

^a Department of Biological and Environmental Sciences ^*  (Finland)

^b UNIVERSITY OF HELSINKI   (Finland)

Author keywords

Evolutionary adaptation; Opsin sequence; Visual pigment

Indexed keywords

SCOTOPSIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMISTRY; EUROPE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; HISTOLOGY; LIGHT; METABOLISM; MICROSPECTROPHOTOMETRY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PERCIFORMES; PROTEIN SECONDARY STRUCTURE; RETINA ROD;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; EUROPE; GENETIC VARIATION; LIGHT; MICROSPECTROPHOTOMETRY; MOLECULAR SEQUENCE DATA; PERCIFORMES; POLYMORPHISM, GENETIC; PROTEIN STRUCTURE, SECONDARY; RETINAL ROD PHOTORECEPTOR CELLS; ROD OPSINS;

KRAEMERIIDAE; POMATOSCHISTUS MINUTUS;

EID: 70350236581     PISSN: 00220949     EISSN: None     Source Type: Journal    
DOI: 10.1242/jeb.031344     Document Type: Article

References (29)

1. Ala-Laurlla, P., Donner, K., Crouch, R. K. and Cornwall, M. C. (2007), Chromophore switch from 11-cls-dehydroretlnal (A2) to 11-cls-retlnal (A1) decreases dark noise In salamander red rods, J. Physiol, 585, 57-74. (Pubitemid 350131103)
2. Archer, S. N., Lythgoe, J. M. and Hall, L. (1992), Rod opsin cDNA sequence from the sand goby (Pomatoschistus minutus) compared with those of other vertebrates, Proc. R. Soc. Lond. B Biol. Sci. 248, 19-25.
3. Bonfleld, J. K., Smith, K. F. and Staden, R. (1995), A new DNA sequence assembly program, Nucleic Acids Res. 23, 4992-4999.
4. Bowmaker, J. K., Qovardovskll, V. I., Zueva, L. V., Hunt, D. M. and Sideleva, V. (1994), Visual pigments and the photic environment: the Cottold fish of Lake Baikal, Vision. Res. 34, 591-605.
5. Carleton, K. L. and Kocher, T. D. (2001), Cone opsin genes of African clchlld fishes: tuning spectral sensitivity by differential gene expression, Mol. Biol. Evol. 18, 1540-1550.
6. Carleton, K. L., Parry, J. W. L., Bowmaker, J. K., Hunt, D. M. and Seehausen, O. (2005), Colour vision and speclatlon In Lake Victoria clchlids of the genus Pundamilia, Mol. Ecol. 14, 4341-4353.
7. Carleton, K. L., Spady, T. C., Streelman, J. T., Kldd, M. R., McFarland, W. N. and Loew, E. R. (2008), Visual sensitivities tuned by heterochrony shifts In opsin gene expression, BMC Biol. 6, 22.
8. Donner, K., Fireov, M. L. and Govardovskll, V. I. (1990), The frequency of isomerisation-like "dark" events In rhodopsln and porphyropsln rods of the bull-frog retina, J. Physiol. 428, 673-692.
9. Fasick, J. I. and Robinson, P. R. (1998 Mechanism of spectral tuning In the dolphin visual pigments, Biochemistry 37, 433-438. (Pubitemid 28123775)
10. Fltzglbbon, J., Hope, A., Slobodyanyuk, S. J., Bellingham, J., Bowmaker, J. K. and Hunt, D. M. (1995), The rhodopsin-encodlng gene of bony fish lacks Introns, Gene 164, 273-277.
11. Govardovskll, V. I., Fyhrquist, N., Reuter, T., Kuzmin, D. G. and Donner, K. (2000), In search of the visual pigment template, Ws. Neurosci. 17, 509-528.
12. Gysels, E. S., Hellemans, B., Patarnello, T. and Volckaert, A. M. (2004), Current and historic gene flow of the sand goby Pomatoschistus minutus on the European Continental Shelf and In the Mediterranean Sea, Biol. J. Linn. Soc. 83, 561-576. (Pubitemid 39623210)
13. Hargrave, P. A., McDowell, J. H., Curtis, D. R., Wang, J. K., Juszczak, E., Fong, S. L., Rao, J. K. and Argos, P. (1983), The structure of bovine rhodopsin, Biophys. Struct. Mech. 9, 235-244.
14. Hope, A. J., Partridge, J. C, Dulai, K. S. and Hunt, D. M. (1997), Mechanisms of wavelength tuning In the rod opsin of deep-sea fishes, Proc. R. Soc. Lond. B Biol. Sci. 264, 155-163.
15. Hunt, D. M., Fltzglbbon, J., Slobodyanyuk, S. and Bowmaker, J. K. (1996), Spectral tuning and molecular evolution of rod visual pigments In the species flock of cottold fish In the Lake Baikal, Viston Res. 36, 1217-1224. (Pubitemid 26138563)
16. Hunt, D. M., Dulai, K. S., Partridge, J. C., Cottrill, P. and Bowmaker, J. K. (2001). The molecular basis of a spectral tuning of rod visual pigments In deep-sea fish, J. Exp. Biol. 204, 3333-3344. (Pubitemid 34865963)
17. Huyse, T., Van Houdt, J. and Volckaert, F. A. M. (2004), Paleocllmatlc history and vlcarlant speclatlon In the "sand goby" group (Goblldae, Teleostel), Mol. Phylogenet. Evol. 32, 324-336.
18. Jerlov, N. G. (1976), Marine Optics. Elsevier Oceanography Series, vol, 14, Arnstsrdsrn: Elssvisr.
19. Jokela, M., Vartlo, A., Paulin, L., Fyhrqulst-Vannl, N. and Donner, K. (2003). Polymorphism of the visual pigment between allopatrlc populations of the sand goby (Pomatoschistus minutus): a mlcrospectrophotometric study, J. Exp. Biol. 206, 2611-2617.
20. Lythgoe, J. N. (1972), The adaptation of visual pigments to the photic environment, In Handbook of Sensory Physiology, vol. VII/I(ed. H. J. A. Dartnall), pp. 566-603. Berlin, Heidelberg, New York: Springer.
21. Merbs, S. L. and Nathans, J. (1993), Role of hydroxyl-bearlng amino acids In differentially tuning the absorption spectra of the human red and green cone pigments, Photochem. Photobiol. 58, 706-710.
22. Miller, P. J. (1986), Gobiidae, In Fishes ol the North-Eastern Atlantic and the Mediterranean, Vol. 3(ed P. J. P. Whitehead, M.-L. Bauchot, J.-C. Hureau, J. Nielsen and E. Tortonese). pp. 1019-1085, Paris: UNESCO.
23. Palczewskl, K., Kumasaka, T., Horl, T., Behnke, C. A., Motoshlma, H., Fox, B. A., Le Trong, I., Teller, D. C. Okada, T., Stenkamp, R. E. et al. (2000), Crystal structure of rhodopsln: A G protein-coupled receptor, Science, 289, 739-745. (Pubitemid 30650186)
24. Parry, J. W., Carleton, K. L., Spady, T., Carboo, A., Hunt, D. and Bowmaker, J. (2005), Mix and match color vision: tuning spectral sensitivity by differential opsin gene expression In Lake Malawi cichlids, Curr. Biol. 15, 1734-1739. (Pubitemid 41415629)
25. Seehausen, O., Teral, Y., Magalhães, I. S., Carleton, K. L., Mrosso, H. D. J., Miyagi, R., van der Sluijs, I., Schneider, M. V., Maan, M. E., Tachlda, H. et al. (2008), Speciation through sensory drive In cichlid fish, Nature 455, 620-626.
26. Stefannl, S. and Thorley, J. L. (2003), Mitochondrial DNA phylogeography reveals the existence of an evolutionary significant unit of the sand goby Pomatoschistus minutus In the Adriatic (Eastern Mediterranean), Mol. Phylogenet. Evol. 28, 601609.
27. Ward, R. D., Woodwark, M. and Skibinski, D. O. F. (1994), A comparison of genetic diversity levels of marine, freshwater and anadromous fishes, J. Fish Biol. 44, 213232. (Pubitemid 2049041)
28. Yokoyama, S. and Tada, T. (2000), Adaptive evolution of the African and Indonesian Coelacants to deep-sea environment, Gene 261, 35-42. (Pubitemid 32103522)
29. Yokoyama, S., Meany, A., Wilkens, H. and Yokoyama, R. (1995), Initial mutational steps toward loss of opsin gene function In caveflsh, Mol. Biol. Evol. 12, 527-532.