메뉴 건너뛰기




Volumn 58, Issue 5, 2009, Pages 663-678

Estimating and testing haplotype-trait associations in non-diploid populations

Author keywords

Expectation maximization algorithm; Genotype; Haplotype; Human immunodeficiency virus; Linear model; Malaria; Phenotype; Quasi species; Strain

Indexed keywords


EID: 70350179988     PISSN: 00359254     EISSN: 14679876     Source Type: Journal    
DOI: 10.1111/j.1467-9876.2009.00673.x     Document Type: Article
Times cited : (3)

References (26)
  • 1
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y. Hochberg, Y. (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Statist. Soc. B, 57, 289 300.
    • (1995) J. R. Statist. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 2
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini, Y. Yekutieli, D. (2001) The control of the false discovery rate in multiple testing under dependency. Ann. Statist., 29, 1165 1188.
    • (2001) Ann. Statist. , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 3
    • 0034972445 scopus 로고    scopus 로고
    • The ears of the hippopotamus: Manifestations, determinants, and estimates of the malaria burden
    • suppl. 1-2
    • Breman, J. G. (2001) The ears of the hippopotamus: manifestations, determinants, and estimates of the malaria burden. Am. J. Trop. Med. Hyg., 64, suppl. 1-2, 1 11.
    • (2001) Am. J. Trop. Med. Hyg. , vol.64 , pp. 1-11
    • Breman, J.G.1
  • 4
    • 0002629270 scopus 로고
    • Maximum likelihood from incomplete data via the em algorithm (with discussion)
    • Dempster, A. P., Laird, N. M. Rubin, D. B. (1977) Maximum likelihood from incomplete data via the EM algorithm (with discussion). J. R. Statist. Soc. B, 39, 1 38.
    • (1977) J. R. Statist. Soc. B , vol.39 , pp. 1-38
    • Dempster, A.P.1    Laird, N.M.2    Rubin, D.B.3
  • 5
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • Excoffier, L. Slatkin, M. (1995) Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Molec. Biol. Evoln, 12, 921 927.
    • (1995) Molec. Biol. Evoln , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 6
    • 33846786816 scopus 로고    scopus 로고
    • A resampling-based approach to multiple testing with uncertainty in phase
    • article 2.
    • Foulkes, A. DeGruttola, V. (2007) A resampling-based approach to multiple testing with uncertainty in phase. Int. J. Biostatist., 3, article 2.
    • (2007) Int. J. Biostatist. , vol.3
    • Foulkes, A.1    Degruttola, V.2
  • 7
    • 52449121199 scopus 로고    scopus 로고
    • A likelihood based approach to mixed modeling with ambiguity in cluster identifiers
    • Foulkes, A., Yucel, R. Li, X. (2008) A likelihood based approach to mixed modeling with ambiguity in cluster identifiers. Biostatistics, 9, 635 657.
    • (2008) Biostatistics , vol.9 , pp. 635-657
    • Foulkes, A.1    Yucel, R.2    Li, X.3
  • 8
    • 47249155352 scopus 로고    scopus 로고
    • Mixed modeling and multiple imputation for unobservable genotype clusters
    • Foulkes, A., Yucel, R. Reilly, M. (2007) Mixed modeling and multiple imputation for unobservable genotype clusters. Statist. Med., 27, 2784 2801.
    • (2007) Statist. Med. , vol.27 , pp. 2784-2801
    • Foulkes, A.1    Yucel, R.2    Reilly, M.3
  • 10
    • 39849106369 scopus 로고    scopus 로고
    • The limits and intensity of plasmodium falciparum transmission: Implications for malaria control and elimination worldwide
    • no.
    • Guerra, C., Gikandi, P., Tatem, A., Noor, A., Smith, D., Hay, S. Snow, R. (2008) The limits and intensity of plasmodium falciparum transmission: implications for malaria control and elimination worldwide. PLoS Med., 5, no. 2, e38.
    • (2008) PLoS Med. , vol.5 , Issue.2 , pp. 38
    • Guerra, C.1    Gikandi, P.2    Tatem, A.3    Noor, A.4    Smith, D.5    Hay, S.6    Snow, R.7
  • 11
    • 0029586396 scopus 로고
    • Estimation of number of malaria clones in blood samples
    • Hill, W. G. Babiker, H. A. (1995) Estimation of number of malaria clones in blood samples. Proc. R. Soc. Lond., 262, 249 257.
    • (1995) Proc. R. Soc. Lond. , vol.262 , pp. 249-257
    • Hill, W.G.1    Babiker, H.A.2
  • 12
    • 0021368476 scopus 로고
    • Inhibition of entry of Plasmodium falciparum and P. vivax sporozoites into cultured cells; An in vitro assay of protective antibodies
    • Hollingdale, M., Nardin, E., Tharavanij, S., Schwartz, A. Nussenzweig, R. (1984) Inhibition of entry of Plasmodium falciparum and P. vivax sporozoites into cultured cells; an in vitro assay of protective antibodies. J. Immunol., 132, 909 913.
    • (1984) J. Immunol. , vol.132 , pp. 909-913
    • Hollingdale, M.1    Nardin, E.2    Tharavanij, S.3    Schwartz, A.4    Nussenzweig, R.5
  • 14
    • 36749013090 scopus 로고    scopus 로고
    • An expectation maximization approach to estimate malaria haplotype frequencies in multiply infected children
    • article
    • Li, X., Foulkes, A., Yucel, R. Rich, S. (2007) An expectation maximization approach to estimate malaria haplotype frequencies in multiply infected children. Statist. Applic. Genet. Molec. Biol., 6, article 33.
    • (2007) Statist. Applic. Genet. Molec. Biol. , vol.6 , pp. 33
    • Li, X.1    Foulkes, A.2    Yucel, R.3    Rich, S.4
  • 15
    • 33645517140 scopus 로고    scopus 로고
    • Likelihood-based inference on haplotype effects in genetic association studies
    • Lin, D. Zeng, D. (2006) Likelihood-based inference on haplotype effects in genetic association studies. J. Am. Statist. Ass., 101, 89 104.
    • (2006) J. Am. Statist. Ass. , vol.101 , pp. 89-104
    • Lin, D.1    Zeng, D.2
  • 16
    • 0001044972 scopus 로고
    • Finding the observed information matrix when using the em algorithm
    • Louis, T. A. (1982) Finding the observed information matrix when using the EM algorithm. J. R. Statist. Soc. B, 44, 226 233.
    • (1982) J. R. Statist. Soc. B , vol.44 , pp. 226-233
    • Louis, T.A.1
  • 18
    • 0001232538 scopus 로고
    • A fast improvement to the em algorithm on its own terms
    • Meilijson, I. (1989) A fast improvement to the EM algorithm on its own terms. J. R. Statist. Soc. B, 51, 127 138.
    • (1989) J. R. Statist. Soc. B , vol.51 , pp. 127-138
    • Meilijson, I.1
  • 19
    • 4043183452 scopus 로고    scopus 로고
    • Choice of a null distribution in resampling-based multiple testing
    • Pollard, K. van der Laan, M. (2004) Choice of a null distribution in resampling-based multiple testing. J. Statist. Planng Inf., 125, 85 100.
    • (2004) J. Statist. Planng Inf. , vol.125 , pp. 85-100
    • Pollard, K.1    Van Der Laan, M.2
  • 20
    • 0036155283 scopus 로고    scopus 로고
    • Score tests for association between traits and haplotypes when linkage phase is ambiguous
    • Schaid, D., Rowland, C., Tines, D., Jacobson, R. Poland, G. (2002) Score tests for association between traits and haplotypes when linkage phase is ambiguous. Am. J. Hum. Genet., 70, 425 434.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 425-434
    • Schaid, D.1    Rowland, C.2    Tines, D.3    Jacobson, R.4    Poland, G.5
  • 21
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of bayesian methods for haplotype reconstruction from population genotype data
    • Stephens, M. Donnelly, P. (2003) A comparison of bayesian methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet., 73, 1162 1169.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 22
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens, M., Smith, N. J. Donnelly, P. (2001) A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet., 68, 978 989.
    • (2001) Am. J. Hum. Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 23
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey, J. Tibshirani, R. (2003) Statistical significance for genomewide studies. Proc. Natn. Acad. Sci. USA, 100, 9440 9445.
    • (2003) Proc. Natn. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.1    Tibshirani, R.2
  • 25
    • 0020620942 scopus 로고
    • Circumsporozoite proteins of malaria parasites contain a single immunodominant region with two or more identical epitopes
    • Zavala, F., Cochrane, A. H., Nardin, E. H., Nussenzweig, R. S. Nussenzweig, V. (1983) Circumsporozoite proteins of malaria parasites contain a single immunodominant region with two or more identical epitopes. J. Exptl Med., 157, 1947 1957.
    • (1983) J. Exptl Med. , vol.157 , pp. 1947-1957
    • Zavala, F.1    Cochrane, A.H.2    Nardin, E.H.3    Nussenzweig, R.S.4    Nussenzweig, V.5
  • 26
    • 0036284203 scopus 로고    scopus 로고
    • Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals
    • Zaykin, D., Westfall, P., Young, S., Karnoub, M., Wagner, M. Ehm, M. (2002) Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals. Hum. Hered., 53, 79 91.
    • (2002) Hum. Hered. , vol.53 , pp. 79-91
    • Zaykin, D.1    Westfall, P.2    Young, S.3    Karnoub, M.4    Wagner, M.5    Ehm, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.