-
1
-
-
33847079676
-
Evaluating protein structures determined by structural genomics consortia
-
Bhattacharya A, Tejero R, Montelione GT (2007) Evaluating protein structures determined by structural genomics consortia. Proteins 66:778-795.
-
(2007)
Proteins
, vol.66
, pp. 778-795
-
-
Bhattacharya, A.1
Tejero, R.2
Montelione, G.T.3
-
2
-
-
55649119346
-
Solution NMR structure determination of proteins revisited
-
Billeter M, Wagner G, Wüthrich K (2008) Solution NMR structure determination of proteins revisited. J Biomol NMR 42:155-158.
-
(2008)
J Biomol NMR
, vol.42
, pp. 155-158
-
-
Billeter, M.1
Wagner, G.2
Wüthrich, K.3
-
3
-
-
61549100580
-
Automated protein structure calculation from NMR data
-
Williamson MP, Craven CJ (2009) Automated protein structure calculation from NMR data. J Biomol NMR 43:131-143.
-
(2009)
J Biomol NMR
, vol.43
, pp. 131-143
-
-
Williamson, M.P.1
Craven, C.J.2
-
4
-
-
0025398721
-
WHAT IF. a molecular modeling and drug design program
-
DOI 10.1016/0263-7855(90)80070-V
-
Vriend G (1990) WHAT IF: A molecular modeling and drug design program. J Mol Graphics 8:52-56. (Pubitemid 20717037)
-
(1990)
Journal of Molecular Graphics
, vol.8
, Issue.1
, pp. 52-56
-
-
Vriend, G.1
-
5
-
-
0026610767
-
Assessment of protein models with three-dimensional profiles
-
Lüthy R, Bowie JU, Eisenberg D (1992) Assessment of protein models with three-dimensional profiles. Nature 356:83-85.
-
(1992)
Nature
, vol.356
, pp. 83-85
-
-
Lüthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
7
-
-
13644252170
-
Protein NMR recall, precision, and F-measure scores (RPF scores): Structure quality assessment measures based on information retrieval statistics
-
DOI 10.1021/ja047109h
-
Huang YJ, Powers R, Montelione GT (2005) Protein NMR Recall, Precision, and F-measure scores (RPF scores): Structure quality assessment measures based on information retrieval statistics. J Am Chem Soc, 127:1665-1674. (Pubitemid 40229151)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.6
, pp. 1665-1674
-
-
Huang, Y.J.1
Powers, R.2
Montelione, G.T.3
-
8
-
-
34547592557
-
MolProbity: All atom contacts and structure validation for proteins and nucleic acids
-
Davis IW, et al. (2007) MolProbity: All atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res 35:W375-W383.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Davis, I.W.1
-
11
-
-
0035544152
-
′ chemical shifts in proteins using a density functional database
-
′ chemical shifts in proteins using a density functional database. J Biomol NMR 21:321-333.
-
(2001)
J Biomol NMR
, vol.21
, pp. 321-333
-
-
Xu, X.-P.1
Case, D.A.2
-
12
-
-
0037114648
-
′ chemical shifts in peptides using density functional theory
-
′ chemical shifts in peptides using density functional theory. Biopolymers 65:408-423.
-
(2002)
Biopolymers
, vol.65
, pp. 408-423
-
-
Xu, X.-P.1
Case, D.A.2
-
13
-
-
0038407231
-
Rapid and accurate calculation of protein 1H, 13C, and 15N chemical shifts
-
Neal S, Nip AM, Zhang H, Wishart DS (2003) Rapid and accurate calculation of protein 1H, 13C, and 15N chemical shifts. J Biomol NMR 26:215-240.
-
(2003)
J Biomol NMR
, vol.26
, pp. 215-240
-
-
Neal, S.1
Nip, A.M.2
Zhang, H.3
Wishart, D.S.4
-
14
-
-
0038703404
-
PROSHIFT: Protein chemical shift prediction using artificial neural networks
-
DOI 10.1023/A:1023060720156
-
Meiler J (2003) PROSHIFT: Protein chemical shift prediction using artificial neural networks. J Biomol NMR 26:25-37. (Pubitemid 36553450)
-
(2003)
Journal of Biomolecular NMR
, vol.26
, Issue.1
, pp. 25-37
-
-
Meiler, J.1
-
15
-
-
34547179849
-
Protein backbone chemical shifts predicted from searching a database for torsional angle and sequence homology
-
Shen Y, Bax Ad (2007) Protein backbone chemical shifts predicted from searching a database for torsional angle and sequence homology. J Biomol NMR 38:289-302.
-
(2007)
J Biomol NMR
, vol.38
, pp. 289-302
-
-
Shen, Y.1
Bax, Ad.2
-
16
-
-
42449146665
-
Consistent blind protein structure generation from NMR chemical shift data
-
DOI 10.1073/pnas.0800256105
-
Shen Y, et al. (2008) Consistent blind protein structure generation from NMR chemical shift data. Proc Natl Acad Sci USA 105:4685-4690. (Pubitemid 351753807)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.12
, pp. 4685-4690
-
-
Shen, Y.1
Lange, O.2
Delaglio, F.3
Rossi, P.4
Aramini, J.M.5
Liu, G.6
Eletsky, A.7
Wu, Y.8
Singarapu, K.K.9
Lemak, A.10
Ignatchenko, A.11
Arrowsmith, C.H.12
Szyperski, T.13
Montelione, G.T.14
Baker, D.15
Bax, A.16
-
17
-
-
55749100006
-
αchemical shift calculations for protein NMR structure determination, refinement, and validation
-
αchemical shift calculations for protein NMR structure determination, refinement, and validation. Proc Natl Acad Sci USA 105:14389-14394.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 14389-14394
-
-
Vila, J.A.1
-
18
-
-
62949126043
-
Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study
-
Ramelot TA, et al. (2008) Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study, Proteins 75:147-167.
-
(2008)
Proteins
, vol.75
, pp. 147-167
-
-
Ramelot, T.A.1
-
19
-
-
70349333933
-
-
Available at Accessed on May 2009
-
All Atom Decoy Sets from Rosetta@home. Available at http://depts. washington.edu/ bakerpg/, 2007. Accessed on May 2009.
-
(2007)
All Atom Decoy Sets from Rosetta@home
-
-
-
20
-
-
0030710459
-
Crystal structure of the unique RNA-binding domain of the influenza virus NS1 protein
-
DOI 10.1038/nsb1197-896
-
Liu J, et al. (1997) Crystal structure of the unique RNA-binding domain of the influenza virus NS1 protein. Nat Struct Biol 4:896-899. (Pubitemid 27479438)
-
(1997)
Nature Structural Biology
, vol.4
, Issue.11
, pp. 896-899
-
-
Liu, J.1
Lynch, P.A.2
Chien, C.-Y.3
Montelione, G.T.4
Krug, R.M.5
Berman, H.M.6
-
21
-
-
0026279527
-
Crystal structure of a barnase-d(GpC) complex at 19 Å resolution
-
Baudet S, Janin J (1991) Crystal structure of a barnase-d(GpC) complex at 1.9 Å resolution. J Mol Biol 219:123-132. (Pubitemid 121003978)
-
(1991)
Journal of Molecular Biology
, vol.219
, Issue.1
, pp. 123-132
-
-
Baudet, S.1
Janin, J.2
-
22
-
-
0028268603
-
Synthetic, structural and biological studies of the ubiquitin system: The total chemical synthesis of ubiquitin
-
Ramage R, et al. (1994) Synthetic, structural and biological studies of the ubiquitin system: The total chemical synthesis of ubiquitin. Biochem J 299:151-158. (Pubitemid 24106302)
-
(1994)
Biochemical Journal
, vol.299
, Issue.1
, pp. 151-158
-
-
Ramage, R.1
Green, J.2
Muir, T.W.3
Ogunjobi, O.M.4
Love, S.5
Shaw, K.6
-
23
-
-
0033954256
-
The protein data bank
-
Berman HM, et al. (2000) The protein data bank. Nucleic Acids Res 28:235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
-
24
-
-
0004161838
-
-
2nd Ed, (Cambridge Univ Press, Cambridge, UK)
-
Press HW, Teukolsky SA, Vetterling WT, Flannery BP (1992) in Numerical Recipes in FORTRAN 77. The Art of Scientific Computing, 2nd Ed, (Cambridge Univ Press, Cambridge, UK), pp 630-633.
-
(1992)
Numerical Recipes in FORTRAN 77. The Art of Scientific Computing
, pp. 630-633
-
-
Press, H.W.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, B.P.4
-
29
-
-
0026551727
-
Functional implications of interleukin-1β based on three-dimensional structure
-
Veerapandian B, et al. (1992) Functional implications of interleukin-1β based on three-dimensional structure. Proteins 12:10-23.
-
(1992)
Proteins
, vol.12
, pp. 10-23
-
-
Veerapandian, B.1
-
30
-
-
0024804106
-
Crystallographic refinement of interleukin 1β at 2.0 Å resolution
-
Priestle JP, Chär H-P, Grütter MG (1989) Crystallographic refinement of interleukin 1β at 2.0 Å resolution. Proc Natl Acad Sci USA 86:9667-9671.
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 9667-9671
-
-
Priestle, J.P.1
Chär, H.-P.2
Grütter, M.G.3
-
32
-
-
0032128284
-
Refinement of triclinic hen egg-white Lysozyme at atomic resolution
-
Walsh MA, et al. (1998) Refinement of triclinic hen egg-white Lysozyme at atomic resolution. Acta Crystallogr D 54:522-546.
-
(1998)
Acta Crystallogr D
, vol.54
, pp. 522-546
-
-
Walsh, M.A.1
-
33
-
-
0035079181
-
NMR solution structure of hen Lysozyme
-
Schwalbe H, et al. (2001) NMR solution structure of hen Lysozyme. Protein Sci 10:677-688.
-
(2001)
Protein Sci
, vol.10
, pp. 677-688
-
-
Schwalbe, H.1
-
34
-
-
0023644679
-
Structure of ubiquitin refined at 1.8 Å resolution
-
Vijay-Kumar S, Bugg CE, Cook WJ (1987) Structure of ubiquitin refined at 1.8 Å resolution. J Mol Biol 194:531-544.
-
(1987)
J Mol Biol
, vol.194
, pp. 531-544
-
-
Vijay-Kumar, S.1
Bugg, C.E.2
Cook, W.J.3
-
35
-
-
12744263121
-
Simultaneous determination of protein structure and dynamics
-
Lindorff-Larsen K, Best RB, Depristo MA, Dobson CM, Vendruscolo M (2005) Simultaneous determination of protein structure and dynamics. Nature 433:128-132.
-
(2005)
Nature
, vol.433
, pp. 128-132
-
-
Lindorff-Larsen, K.1
Best, R.B.2
Depristo, M.A.3
Dobson, C.M.4
Vendruscolo, M.5
-
37
-
-
0032528033
-
Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase
-
DOI 10.1021/ja9812610
-
Cornilescu G, Marquardt JL, Ottiger M, Bax A (1998) Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase. J Am Chem Soc 120:6836-6837. (Pubitemid 28347351)
-
(1998)
Journal of the American Chemical Society
, vol.120
, Issue.27
, pp. 6836-6837
-
-
Cornilescu, G.1
Marquardt, J.L.2
Ottiger, M.3
Bax, A.4
-
38
-
-
84988097454
-
Locally dense basis-sets for chemical-shift calculations
-
Chesnut DB, Moore KD (1989) Locally dense basis-sets for chemical-shift calculations. J Comp Chem 10:648-659.
-
(1989)
J Comp Chem
, vol.10
, pp. 648-659
-
-
Chesnut, D.B.1
Moore, K.D.2
-
40
-
-
33645511814
-
A new force field (ECEPP05) for peptides proteins and organic molecules
-
Arnautova YA, Jagielska A, Scheraga HA (2006) A new force field (ECEPP05) for peptides proteins and organic molecules. J Phys Chem B 110:5025-5044.
-
(2006)
J Phys Chem B
, vol.110
, pp. 5025-5044
-
-
Arnautova, Y.A.1
Jagielska, A.2
Scheraga, H.A.3
|