메뉴 건너뛰기




Volumn 4, Issue 10, 2009, Pages

Centralized modularity of N-linked glycosylation pathways in mammalian cells

Author keywords

[No Author keywords available]

Indexed keywords

GLYCAN; GLYCOPROTEIN; LIPID; POLYSACCHARIDE; SIALIC ACID DERIVATIVE;

EID: 70350114562     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0007317     Document Type: Article
Times cited : (27)

References (45)
  • 1
    • 11944256494 scopus 로고
    • Catalytic mechanism of enzymic glycosyl transfer
    • Sinnott ML (1990) Catalytic mechanism of enzymic glycosyl transfer. Chem Rev 90: 1171-1202.
    • (1990) Chem Rev , vol.90 , pp. 1171-1202
    • Sinnott, M.L.1
  • 3
    • 28544444249 scopus 로고    scopus 로고
    • Glycomics: An integrated systems approach to structure-function relationships of glycans
    • Raman R, Raguram S, Venkataraman G, Paulson JC, Sasisekharan R (2005) Glycomics: an integrated systems approach to structure-function relationships of glycans. Nat Meth 2: 817-824.
    • (2005) Nat Meth , vol.2 , pp. 817-824
    • Raman, R.1    Raguram, S.2    Venkataraman, G.3    Paulson, J.C.4    Sasisekharan, R.5
  • 4
    • 28444447140 scopus 로고    scopus 로고
    • Large-scale approaches for glycobiology
    • Campbell CT, Yarema KJ (2005) Large-scale approaches for glycobiology. Genome Biol 6: 236.
    • (2005) Genome Biol , vol.6 , pp. 236
    • Campbell, C.T.1    Yarema, K.J.2
  • 5
    • 16644376080 scopus 로고    scopus 로고
    • Bioinformatics for glycomics: Status, methods, requirements and perspectives
    • von der Lieth C-W, Bohne-Lang A, Lohmann KK, Frank M (2004) Bioinformatics for glycomics: status, methods, requirements and perspectives. Brief Bioinform 5: 164-178.
    • (2004) Brief Bioinform , vol.5 , pp. 164-178
    • von der Lieth, C.-W.1    Bohne-Lang, A.2    Lohmann, K.K.3    Frank, M.4
  • 8
    • 84886117439 scopus 로고    scopus 로고
    • Mammalian glycosylation: An overview of carbohydrate biosynthesis
    • Yarema KJ, ed, Boca Raton, Florida: Francis & Taylor/CRC Press. pp
    • Chen H, Wang Z, Sun Z, Kim EJ, Yarema KJ (2005) Mammalian glycosylation: an overview of carbohydrate biosynthesis. In: Yarema KJ, ed. Handbook of carbohydrate engineering. Boca Raton, Florida: Francis & Taylor/CRC Press. pp 1-48.
    • (2005) Handbook of carbohydrate engineering , pp. 1-48
    • Chen, H.1    Wang, Z.2    Sun, Z.3    Kim, E.J.4    Yarema, K.J.5
  • 9
    • 33748195979 scopus 로고    scopus 로고
    • Glycosylation in cellular mechanisms of health and disease
    • Ohtsubo K, Marth JD (2006) Glycosylation in cellular mechanisms of health and disease. Cell 126: 855-867.
    • (2006) Cell , vol.126 , pp. 855-867
    • Ohtsubo, K.1    Marth, J.D.2
  • 10
    • 33745526819 scopus 로고    scopus 로고
    • Protein glycosylation in diverse cell systems: Implications for modification and analysis of recombinant proteins
    • Brooks SA (2006) Protein glycosylation in diverse cell systems: implications for modification and analysis of recombinant proteins. Expert Rev Proteomics 3: 345-359.
    • (2006) Expert Rev Proteomics , vol.3 , pp. 345-359
    • Brooks, S.A.1
  • 11
    • 23844433927 scopus 로고    scopus 로고
    • Animal cell cultures: Recent achievements and perspectives in the production of biopharmaceuticals
    • Butler M (2005) Animal cell cultures: recent achievements and perspectives in the production of biopharmaceuticals. Appl Microbiol Biotechnol 68: 283-291.
    • (2005) Appl Microbiol Biotechnol , vol.68 , pp. 283-291
    • Butler, M.1
  • 12
    • 13544276336 scopus 로고    scopus 로고
    • Glycosylation of recombinant antibody therapeutics
    • Jefferis R (2005) Glycosylation of recombinant antibody therapeutics. Biotechnol Prog 21: 11-16.
    • (2005) Biotechnol Prog , vol.21 , pp. 11-16
    • Jefferis, R.1
  • 13
    • 0035937505 scopus 로고    scopus 로고
    • Intracellular functions of N-linked glycans
    • Helenius A, Aebi M (2001) Intracellular functions of N-linked glycans. Science 291: 2364-2369.
    • (2001) Science , vol.291 , pp. 2364-2369
    • Helenius, A.1    Aebi, M.2
  • 16
    • 70350123394 scopus 로고    scopus 로고
    • Dorogovtsev SN, Mendes JFF (2003) Evolution of networks: from biological nets to the Internet and WWW. Oxford: Oxford University Press.
    • Dorogovtsev SN, Mendes JFF (2003) Evolution of networks: from biological nets to the Internet and WWW. Oxford: Oxford University Press.
  • 17
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabási A-L, Oltvai ZN (2004) Network biology: understanding the cell's functional organization. Nat Rev Genet 5: 101-113.
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabási, A.-L.1    Oltvai, Z.N.2
  • 18
    • 45149111660 scopus 로고    scopus 로고
    • The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
    • Feist AM, Palsson BØ (2008) The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli. Nat Biotechnol 26: 659-667.
    • (2008) Nat Biotechnol , vol.26 , pp. 659-667
    • Feist, A.M.1    Palsson, B.2
  • 20
    • 53349117774 scopus 로고    scopus 로고
    • High-quality binary protein interaction map of the yeast interactome network
    • Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, et al. (2008) High-quality binary protein interaction map of the yeast interactome network. Science 322: 104-110.
    • (2008) Science , vol.322 , pp. 104-110
    • Yu, H.1    Braun, P.2    Yildirim, M.A.3    Lemmens, I.4    Venkatesan, K.5
  • 22
    • 56849091295 scopus 로고    scopus 로고
    • Network hubs buffer environmental variation in Saccharomyces cerevisiae
    • doi:10.1371/ journal.pbio.0060264
    • Levy SF, Siegal ML (2008) Network hubs buffer environmental variation in Saccharomyces cerevisiae. PLoS Biol 6: e264. doi:10.1371/ journal.pbio.0060264.
    • (2008) PLoS Biol , vol.6
    • Levy, S.F.1    Siegal, M.L.2
  • 23
    • 27744585668 scopus 로고    scopus 로고
    • Lethality and synthetic lethality in the genome-wide metabolic network of Escherichia coli
    • Ghim C-M, Goh K-I, Kahng B (2005) Lethality and synthetic lethality in the genome-wide metabolic network of Escherichia coli. J Theor Biol 237: 401-411.
    • (2005) J Theor Biol , vol.237 , pp. 401-411
    • Ghim, C.-M.1    Goh, K.-I.2    Kahng, B.3
  • 24
    • 26944455107 scopus 로고    scopus 로고
    • Robustness of the avalanche dynamics in data-packet transport on scale-free networks
    • Lee EJ, Goh K-I, Kahng B, Kim D (2005) Robustness of the avalanche dynamics in data-packet transport on scale-free networks. Phys Rev E 71: 056108.
    • (2005) Phys Rev E , vol.71 , pp. 056108
    • Lee, E.J.1    Goh, K.-I.2    Kahng, B.3    Kim, D.4
  • 25
    • 0141872530 scopus 로고    scopus 로고
    • Probabilistic prediction in scale-free networks: Diameter changes
    • Kim J-H, Goh K-I, Kahng B, Kim D (2003) Probabilistic prediction in scale-free networks: diameter changes. Phys Rev Lett 91: 058701.
    • (2003) Phys Rev Lett , vol.91 , pp. 058701
    • Kim, J.-H.1    Goh, K.-I.2    Kahng, B.3    Kim, D.4
  • 26
    • 33745012299 scopus 로고    scopus 로고
    • Modularity and community structure in networks
    • Newman MEJ (2006) Modularity and community structure in networks. Proc Natl Acad Sci U S A 103: 8577-8582.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 8577-8582
    • Newman, M.E.J.1
  • 27
    • 38849162343 scopus 로고    scopus 로고
    • Computing communities in large networks using random walks
    • Pons P, Latapy M (2006) Computing communities in large networks using random walks. J Graph Alg Appl 10: 191-218.
    • (2006) J Graph Alg Appl , vol.10 , pp. 191-218
    • Pons, P.1    Latapy, M.2
  • 28
    • 47749097124 scopus 로고    scopus 로고
    • Regulation of glycan structures in animal tissues: Transcript profiling of glycan-related genes
    • Nairn AV, York WS, Harris K, Hall EM, Pierce JM, et al. (2008) Regulation of glycan structures in animal tissues: transcript profiling of glycan-related genes. J Biol Chem 283: 17298-17313.
    • (2008) J Biol Chem , vol.283 , pp. 17298-17313
    • Nairn, A.V.1    York, W.S.2    Harris, K.3    Hall, E.M.4    Pierce, J.M.5
  • 29
    • 31144473655 scopus 로고    scopus 로고
    • A focused microarray approach to functional glycomics: Transcriptional regulation of the glycome
    • Comelli EM, Head SR, Gilmartin T, Whisenant T, Haslam SM, et al. (2006) A focused microarray approach to functional glycomics: transcriptional regulation of the glycome. Glycobiology 16: 117-131.
    • (2006) Glycobiology , vol.16 , pp. 117-131
    • Comelli, E.M.1    Head, S.R.2    Gilmartin, T.3    Whisenant, T.4    Haslam, S.M.5
  • 30
    • 33847361011 scopus 로고    scopus 로고
    • Developmental changes in the expression of glycogenes and the content of N-glycans in the mouse cerebral cortex
    • Ishii A, Ikeda T, Hitoshi S, Fujimoto I, Torii T, et al. (2007) Developmental changes in the expression of glycogenes and the content of N-glycans in the mouse cerebral cortex. Glycobiology 17: 261-276.
    • (2007) Glycobiology , vol.17 , pp. 261-276
    • Ishii, A.1    Ikeda, T.2    Hitoshi, S.3    Fujimoto, I.4    Torii, T.5
  • 31
    • 0036500834 scopus 로고    scopus 로고
    • Reverse engineering of biological complexity
    • Csete ME, Doyle JC (2002) Reverse engineering of biological complexity. Science 295: 1664-1669.
    • (2002) Science , vol.295 , pp. 1664-1669
    • Csete, M.E.1    Doyle, J.C.2
  • 32
    • 0021749885 scopus 로고
    • A dominant mutation to ricin resistance in Chinese hamster ovary cells induces UDP-GlcNAc:glycopeptide β-4-N-acetylglucosaminyltransferase III activity
    • Campbell C, Stanley P (1984) A dominant mutation to ricin resistance in Chinese hamster ovary cells induces UDP-GlcNAc:glycopeptide β-4-N-acetylglucosaminyltransferase III activity. J Biol Chem 259: 13370-13378.
    • (1984) J Biol Chem , vol.259 , pp. 13370-13378
    • Campbell, C.1    Stanley, P.2
  • 33
    • 0032032778 scopus 로고    scopus 로고
    • Synthesis of bisected glycoforms of recombinant IFN-β by overexpression of β-1,4- N-acetylglucosaminyltransferase III in Chinese hamster ovary cells
    • Sburlati AR, Umaña P, Prati EGP, Bailey JE (1998) Synthesis of bisected glycoforms of recombinant IFN-β by overexpression of β-1,4- N-acetylglucosaminyltransferase III in Chinese hamster ovary cells. Biotechnol Prog 14: 189-192.
    • (1998) Biotechnol Prog , vol.14 , pp. 189-192
    • Sburlati, A.R.1    Umaña, P.2    Prati, E.G.P.3    Bailey, J.E.4
  • 34
    • 0033044588 scopus 로고    scopus 로고
    • Engineered glycoforms of an antineuroblastoma IgG1 with optimized antibody-dependent cellular cytotoxic activity
    • Umaña P, Jean-Mairet J, Moudry R, Amstutz H, Bailey JE (1999) Engineered glycoforms of an antineuroblastoma IgG1 with optimized antibody-dependent cellular cytotoxic activity. Nat Biotechnol 17: 176-180.
    • (1999) Nat Biotechnol , vol.17 , pp. 176-180
    • Umaña, P.1    Jean-Mairet, J.2    Moudry, R.3    Amstutz, H.4    Bailey, J.E.5
  • 35
    • 0035921175 scopus 로고    scopus 로고
    • Expression of GnTIII in a recombinant anti-CD20 CHO production cell line: Expression of antibodies with altered glycoforms leads to an increase in ADCC through higher affinity for FcγRIII
    • Davies J, Jiang L, Pan L-Z, LaBarre MJ, Anderson D, et al. (2001) Expression of GnTIII in a recombinant anti-CD20 CHO production cell line: expression of antibodies with altered glycoforms leads to an increase in ADCC through higher affinity for FcγRIII. Biotechnol Bioeng 74: 288-294.
    • (2001) Biotechnol Bioeng , vol.74 , pp. 288-294
    • Davies, J.1    Jiang, L.2    Pan, L.-Z.3    LaBarre, M.J.4    Anderson, D.5
  • 36
    • 41349123508 scopus 로고    scopus 로고
    • Scale-free trees: The skeletons of complex networks
    • Kim D-H, Noh J-D, Jeong H (2004) Scale-free trees: the skeletons of complex networks. Phys Rev E 70: 046126.
    • (2004) Phys Rev E , vol.70 , pp. 046126
    • Kim, D.-H.1    Noh, J.-D.2    Jeong, H.3
  • 37
    • 28844473175 scopus 로고    scopus 로고
    • A mathematical model of N-linked glycosylation
    • Krambeck FJ, Betenbaugh MJ (2005) A mathematical model of N-linked glycosylation. Biotechnol Bioeng 92: 711-728.
    • (2005) Biotechnol Bioeng , vol.92 , pp. 711-728
    • Krambeck, F.J.1    Betenbaugh, M.J.2
  • 39
    • 58149093549 scopus 로고    scopus 로고
    • An alpha-numeric code for representing N-linked glycan structures in secreted glycoproteins
    • Yusufi FNK, Park W, Lee MM, Lee D-Y (2009) An alpha-numeric code for representing N-linked glycan structures in secreted glycoproteins. Bioproc Biosys Eng 32: 97-107.
    • (2009) Bioproc Biosys Eng , vol.32 , pp. 97-107
    • Yusufi, F.N.K.1    Park, W.2    Lee, M.M.3    Lee, D.-Y.4
  • 40
    • 0031712231 scopus 로고    scopus 로고
    • Substrate specificities of recombinant murine Golgi α1,2-mannosidases IA and IB and comparison with endoplasmic reticulum and Golgi processing α1,2-mannosidases
    • Lal A, Pang P, Kalelkar S, Romero PA, Herscovics A, et al. (1998) Substrate specificities of recombinant murine Golgi α1,2-mannosidases IA and IB and comparison with endoplasmic reticulum and Golgi processing α1,2-mannosidases. Glycobiology 8: 981-995.
    • (1998) Glycobiology , vol.8 , pp. 981-995
    • Lal, A.1    Pang, P.2    Kalelkar, S.3    Romero, P.A.4    Herscovics, A.5
  • 41
    • 3142713181 scopus 로고    scopus 로고
    • Structure of mouse Golgi α-mannosidase IA reveals the molecular basis for substrate specificity among class 1 (family 47 glycosylhydrolase) α1,2-mannosidases
    • Tempel W, Karaveg K, Liu Z-J, Rose J, Wang B-C, et al. (2004) Structure of mouse Golgi α-mannosidase IA reveals the molecular basis for substrate specificity among class 1 (family 47 glycosylhydrolase) α1,2-mannosidases. J Biol Chem 279: 29774-29786.
    • (2004) J Biol Chem , vol.279 , pp. 29774-29786
    • Tempel, W.1    Karaveg, K.2    Liu, Z.-J.3    Rose, J.4    Wang, B.-C.5
  • 42
    • 33845247062 scopus 로고    scopus 로고
    • GlycoVis: Visualizing glycan distribution in the protein N-glycosylation pathway in mammalian cells
    • Hossler P, Goh L-T, Lee MM, Hu W-S (2006) GlycoVis: visualizing glycan distribution in the protein N-glycosylation pathway in mammalian cells. Biotechnol Bioeng 95: 946-960.
    • (2006) Biotechnol Bioeng , vol.95 , pp. 946-960
    • Hossler, P.1    Goh, L.-T.2    Lee, M.M.3    Hu, W.-S.4
  • 43
    • 0021891884 scopus 로고
    • Assembly of asparagine-linked oligosaccharides
    • Kornfeld R, Kornfeld S (1985) Assembly of asparagine-linked oligosaccharides. Annu Rev Biochem 54: 631-664.
    • (1985) Annu Rev Biochem , vol.54 , pp. 631-664
    • Kornfeld, R.1    Kornfeld, S.2
  • 44
    • 41449087415 scopus 로고    scopus 로고
    • Community structure in directed networks
    • Leicht EA, Newman MEJ (2008) Community structure in directed networks. Phys Rev Lett 100: 118703.
    • (2008) Phys Rev Lett , vol.100 , pp. 118703
    • Leicht, E.A.1    Newman, M.E.J.2
  • 45
    • 70350103356 scopus 로고    scopus 로고
    • CFG nomenclature
    • CFG nomenclature. http://glycomics.scripps.edu/CFGnomenclature.pdf.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.