-
1
-
-
10244222365
-
Comparison of topological descriptors for similarity-based virtual screening using multiple bioactive reference structures
-
Hert, J.; Willett, P.; Wilton, D. J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. Comparison of topological descriptors for similarity-based virtual screening using multiple bioactive reference structures. Ore. Biomol. Chem. 2004, 2 (22), 3256-3266
-
(2004)
Ore. Biomol. Chem.
, vol.2
, Issue.22
, pp. 3256-3266
-
-
Hert, J.1
Willett, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
-
2
-
-
11144323163
-
Virtual screening of chemical libraries
-
Shoichet, B. K. Virtual screening of chemical libraries. Nature 2004, 432 (7019), 862-865
-
(2004)
Nature
, vol.432
, Issue.7019
, pp. 862-865
-
-
Shoichet, B.K.1
-
3
-
-
34250843840
-
MED-SuMoLig: A new ligand-based screening tool for efficient scaffold hopping
-
Sperandio, O.; Andrieu, O.; Miteva, M. A.; Vo, M. Q.; Souaille, M.; Delfaud, F.; Villoutreix, B. O. MED-SuMoLig: a new ligand-based screening tool for efficient scaffold hopping. J. Chem. Inf. Model. 2007, 47 (3), 1097-1110
-
(2007)
J. Chem. Inf. Model.
, vol.47
, Issue.3
, pp. 1097-1110
-
-
Sperandio, O.1
Andrieu, O.2
Miteva, M.A.3
Vo, M.Q.4
Souaille, M.5
Delfaud, F.6
Villoutreix, B.O.7
-
4
-
-
57549111678
-
FieldScreen: Virtual screening using molecular fields. Application to the DUD data set
-
Cheeseright, T. J.; Mackey, M. D.; Melville, J. L.; Vinter, J. G. FieldScreen: virtual screening using molecular fields. Application to the DUD data set. J. Chem. Inf. Model. 2008, 48 (11), 2108-2117
-
(2008)
J. Chem. Inf. Model.
, vol.48
, Issue.11
, pp. 2108-2117
-
-
Cheeseright, T.J.1
MacKey, M.D.2
Melville, J.L.3
Vinter, J.G.4
-
5
-
-
33749260698
-
A critical assessment of docking programs and scoring functions
-
Warren, G. L.; Andrews, C. W.; Capelli, A. M.; Clarke, B.; LaLonde, J.; Lambert, M. H.; Lindvall, M.; Nevins, N.; Semus, S. F.; Senger, S.; Tedesco, G.; Wall, I. D.; Woolven, J. M.; Peishoff, C. E.; Head, M. S. A critical assessment of docking programs and scoring functions. J. Med. Chem. 2006, 49 (20), 5912-5931
-
(2006)
J. Med. Chem.
, vol.49
, Issue.20
, pp. 5912-5931
-
-
Warren, G.L.1
Andrews, C.W.2
Capelli, A.M.3
Clarke, B.4
Lalonde, J.5
Lambert, M.H.6
Lindvall, M.7
Nevins, N.8
Semus, S.F.9
Senger, S.10
Tedesco, G.11
Wall, I.D.12
Woolven, J.M.13
Peishoff, C.E.14
Head, M.S.15
-
6
-
-
33749242759
-
Contribution of conformer focusing to the uncertainty in predicting free energies for protein-ligand binding
-
Tirado-Rives, J.; Jorgensen, W. L. Contribution of conformer focusing to the uncertainty in predicting free energies for protein-ligand binding. J. Med. Chem. 2006, 49 (20), 5880-5884
-
(2006)
J. Med. Chem.
, vol.49
, Issue.20
, pp. 5880-5884
-
-
Tirado-Rives, J.1
Jorgensen, W.L.2
-
7
-
-
23944454816
-
Virtual screening of biogenic amine-binding G-protein coupled receptors: Comparative evaluation of protein- and ligand-based virtual screening protocols
-
Evers, A.; Hessler, G.; Matter, H.; Klabunde, T. Virtual screening of biogenic amine-binding G-protein coupled receptors: comparative evaluation of protein- and ligand-based virtual screening protocols. J. Med. Chem. 2005, 48 (17), 5448-5465
-
(2005)
J. Med. Chem.
, vol.48
, Issue.17
, pp. 5448-5465
-
-
Evers, A.1
Hessler, G.2
Matter, H.3
Klabunde, T.4
-
8
-
-
33846212271
-
Comparison of shape- matching and docking as virtual screening tools
-
Hawkins, P. C.; Skillman, A. G.; Nicholls, A. Comparison of shape- matching and docking as virtual screening tools. J. Med. Chem. 2007, 50 (1), 74-82.
-
(2007)
J. Med. Chem.
, vol.50
, Issue.1
, pp. 74-82
-
-
Hawkins, P.C.1
Skillman, A.G.2
Nicholls, A.3
-
9
-
-
34547673017
-
Comparison of topological, shape, and docking methods in virtual screening
-
McGaughey, G. B.; Sheridan, R. P.; Bayly, C. I.; Culberson, J. C.; Kreatsoulas, C.; Lindsley, S.; Maiorov, V.; Truchon, J. F.; Cornell, W. D. Comparison of topological, shape, and docking methods in virtual screening. J. Chem. Inf. Model. 2007, 47 (4), 1504-1519
-
(2007)
J. Chem. Inf. Model.
, vol.47
, Issue.4
, pp. 1504-1519
-
-
McGaughey, G.B.1
Sheridan, R.P.2
Bayly, C.I.3
Culberson, J.C.4
Kreatsoulas, C.5
Lindsley, S.6
Maiorov, V.7
Truchon, J.F.8
Cornell, W.D.9
-
10
-
-
42149089443
-
Comparison of ligand-based and receptor-based virtual screening of HIV entry inhibitors for the CXCR4 and CCR5 receptors using 3D ligand shape matching and ligand-receptor docking
-
Perez-Nueno, V. I.; Ritchie, D. W.; Rabal, O.; Pascual, R.; Borrell, J. I.; Teixido, J. Comparison of ligand-based and receptor-based virtual screening of HIV entry inhibitors for the CXCR4 and CCR5 receptors using 3D ligand shape matching and ligand-receptor docking. J. Chem. Inf. Model. 2008, 48 (3), 509-533
-
(2008)
J. Chem. Inf. Model.
, vol.48
, Issue.3
, pp. 509-533
-
-
Perez-Nueno, V.I.1
Ritchie, D.W.2
Rabal, O.3
Pascual, R.4
Borrell, J.I.5
Teixido, J.6
-
11
-
-
14944348527
-
A shape-based 3-D scaffold hopping method and its application to a bacterial protein- protein interaction
-
Rush, T. S., III; Grant, J. A.; Mosyak, L.; Nicholls, A. A shape-based 3-D scaffold hopping method and its application to a bacterial protein- protein interaction. J. Med. Chem. 2005, 48 (5), 1489-1495
-
(2005)
J. Med. Chem.
, vol.48
, Issue.5
, pp. 1489-1495
-
-
Rush, T.S.1
Grant2
J, A.3
Mosyak, L.4
Nicholls, A.5
-
12
-
-
10844249112
-
Molecular surface point environments for virtual screening and the elucidation of binding patterns (MOLPRINT 3D)
-
DOI 10.1021/jm049611i
-
Bender, A.; Mussa, H. Y.; Gill, G. S.; Glen, R. C. Molecular surface point environments for virtual screening and the elucidation of binding patterns (MOLPRINT 3D). J. Med. Chem. 2004, 47 (26), 6569-6583 (Pubitemid 39662752)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.26
, pp. 6569-6583
-
-
Bender, A.1
Mussa, H.Y.2
Gill, G.S.3
Glen, R.C.4
-
13
-
-
34250205540
-
SHOP: Scaffold HOPping by GRID-based similarity searches
-
Bergmann, R.; Linusson, A.; Zamora, I. SHOP: scaffold HOPping by GRID-based similarity searches. J. Med. Chem. 2007, 50 (11), 2708-2717
-
(2007)
J. Med. Chem.
, vol.50
, Issue.11
, pp. 2708-2717
-
-
Bergmann, R.1
Linusson, A.2
Zamora, I.3
-
14
-
-
33646227896
-
Molecular field extrema as descriptors of biological activity: Definition and validation
-
Cheeseright, T.; Mackey, M.; Rose, S.; Vinter, A. Molecular field extrema as descriptors of biological activity: definition and validation. J. Chem. Inf. Model. 2006, 46 (2), 665-676
-
(2006)
J. Chem. Inf. Model.
, vol.46
, Issue.2
, pp. 665-676
-
-
Cheeseright, T.1
MacKey, M.2
Rose, S.3
Vinter, A.4
-
15
-
-
33845339664
-
3D pharmacophore based virtual screening of T-type calcium channel blockers
-
DOI 10.1016/j.bmc.2006.10.013, PII S0968089606008455
-
Doddareddy, M. R.; Choo, H.; Cho, Y. S.; Rhim, H.; Koh, H. Y.; Lee, J. H.; Jeong, S. W.; Pae, A. N. 3D pharmacophore based virtual screening of T-type calcium channel blockers. Bioore. Med. Chem. 2007, 15 (2), 1091-1105 (Pubitemid 44880695)
-
(2007)
Bioorganic and Medicinal Chemistry
, vol.15
, Issue.2
, pp. 1091-1105
-
-
Doddareddy, M.R.1
Choo, H.2
Cho, Y.S.3
Rhim, H.4
Koh, H.Y.5
Lee, J.-H.6
Jeong, S.-W.7
Pae, A.N.8
-
16
-
-
27444434546
-
Scaffold hopping with molecular field points: Identification of a cholecystokinin-2 (CCK2) receptor pharmacophore and its use in the design of a prototypical series of pyrrole- and imidazole-based CCK2 antagonists
-
Low, C. M.; Buck, I. M.; Cooke, T.; Cushnir, J. R.; Kalindjian, S. B.; Kotecha, A.; Pether, M. J.; Shankley, N. P.; Vinter, J. G.; Wright, L. Scaffold hopping with molecular field points: identification of a cholecystokinin-2 (CCK2) receptor pharmacophore and its use in the design of a prototypical series of pyrrole- and imidazole-based CCK2 antagonists. J. Med. Chem. 2005, 48 (22), 6790-6802
-
(2005)
J. Med. Chem.
, vol.48
, Issue.22
, pp. 6790-6802
-
-
Low, C.M.1
Buck, I.M.2
Cooke, T.3
Cushnir, J.R.4
Kalindjian, S.B.5
Kotecha, A.6
Pether, M.J.7
Shankley, N.P.8
Vinter, J.G.9
Wright, L.10
-
17
-
-
33745221417
-
The discovery of new 11beta-hydrox- ysteroid dehydrogenase type 1 inhibitors by common feature phar- macophore modeling and virtual screening
-
Schuster, D.; Maurer, E. M.; Laggner, C.; Nashev, L. G.; Wilckens, T.; Langer, T.; Odermatt, A. The discovery of new 11beta-hydrox- ysteroid dehydrogenase type 1 inhibitors by common feature phar- macophore modeling and virtual screening. J. Med. Chem. 2006, 49 (12), 3454-3466
-
(2006)
J. Med. Chem.
, vol.49
, Issue.12
, pp. 3454-3466
-
-
Schuster, D.1
Maurer, E.M.2
Laggner, C.3
Nashev, L.G.4
Wilckens, T.5
Langer, T.6
Odermatt, A.7
-
18
-
-
33751246188
-
Similarity-based virtual screening using 2D fingerprints
-
Willett, P. Similarity-based virtual screening using 2D fingerprints. Drug Discov. Today 2006, 11 (23 -24), 1046-1053
-
(2006)
Drug Discov. Today
, vol.11
, Issue.23-24
, pp. 1046-1053
-
-
Willett, P.1
-
19
-
-
0036827080
-
Performance of similarity measures in 2D fragment-based similarity searching: Comparison of structural descriptors and similarity coefficients
-
Chen, X.; Reynolds, C. H. Performance of similarity measures in 2D fragment-based similarity searching: comparison of structural descriptors and similarity coefficients. J. Chem. Inf. Comput. Sci. 2002, 42 (6), 1407-1414
-
(2002)
J. Chem. Inf. Comput. Sci.
, vol.42
, Issue.6
, pp. 1407-1414
-
-
Chen, X.1
Reynolds, C.H.2
-
20
-
-
33845775349
-
Design and evaluation of a novel class-directed 2D fingerprint to search for structurally diverse active compounds
-
Eckert, H.; Bajorath, J. Design and evaluation of a novel class-directed 2D fingerprint to search for structurally diverse active compounds. J. Chem. Inf. Model. 2006, 46 (6), 2515-2526
-
(2006)
J. Chem. Inf. Model.
, vol.46
, Issue.6
, pp. 2515-2526
-
-
Eckert, H.1
Bajorath, J.2
-
21
-
-
33750991346
-
Benchmarking sets for molecular docking
-
Huang, N.; Shoichet, B. K.; Irwin, J. J. Benchmarking sets for molecular docking. J. Med. Chem. 2006, 49 (23), 6789-6801
-
(2006)
J. Med. Chem.
, vol.49
, Issue.23
, pp. 6789-6801
-
-
Huang, N.1
Shoichet, B.K.2
Irwin, J.J.3
-
22
-
-
41349122416
-
Optimization of CAMD techniques 3. Virtual screening enrichment studies: A help or hindrance in tool selection
-
Good, A. C.; Oprea, T. I. Optimization of CAMD techniques 3. Virtual screening enrichment studies: a help or hindrance in tool selection. J. Comput.-Aided Mol. Des. 2008, 22 (3 -4), 169-178
-
(2008)
J. Comput.-Aided Mol. Des.
, vol.22
, Issue.3-4
, pp. 169-178
-
-
Good, A.C.1
Oprea, T.I.2
-
23
-
-
65249089058
-
How to optimize shape-based virtual screening: Choosing the right query and including chemical information
-
Kirchmair, J.; Distinto, S.; Markt, P.; Schuster, D.; Spitzer, G. M.; Liedl, K. R.; Wolber, G. How To Optimize Shape-Based Virtual Screening: Choosing the Right Query and Including Chemical Information. J. Chem. Inf. Model. 2009, 49 (3), 678-692
-
(2009)
J. Chem. Inf. Model.
, vol.49
, Issue.3
, pp. 678-692
-
-
Kirchmair, J.1
Distinto, S.2
Markt, P.3
Schuster, D.4
Spitzer, G.M.5
Liedl, K.R.6
Wolber, G.7
-
24
-
-
44449107147
-
Support- vector-machine-based ranking significantly improves the effectiveness of similarity searching using 2D fingerprints and multiple reference compounds
-
Geppert, H.; Horvath, T.; Gartner, T.; Wrobel, S.; Bajorath, J. Support- vector-machine-based ranking significantly improves the effectiveness of similarity searching using 2D fingerprints and multiple reference compounds. J. Chem. Inf. Model. 2008, 48 (4), 742-746
-
(2008)
J. Chem. Inf. Model.
, vol.48
, Issue.4
, pp. 742-746
-
-
Geppert, H.1
Horvath, T.2
Gartner, T.3
Wrobel, S.4
Bajorath, J.5
-
25
-
-
34548150135
-
Comparison of 2D fingerprint methods for multiple template similarity searching on compound activity classes of increasing structural diversity
-
Tovar, A.; Eckert, H.; Bajorath, J. Comparison of 2D fingerprint methods for multiple template similarity searching on compound activity classes of increasing structural diversity. Chem. Med. Chem. 2007, 2 (2), 208-217
-
(2007)
Chem. Med. Chem.
, vol.2
, Issue.2
, pp. 208-217
-
-
Tovar, A.1
Eckert, H.2
Bajorath, J.3
-
26
-
-
0030191311
-
Stigmata an algorithm to determine structural commonalities in diverse datasets
-
Shemetulskis, N. E.; Weininger, D.; Blankley, C. J.; Yang, J. J.; Humblet, C. Stigmata: an algorithm to determine structural commonalities in diverse datasets. J. Chem. Inf. Comput. 1996, 36 (4), 862-871
-
(1996)
J. Chem. Inf. Comput.
, vol.36
, Issue.4
, pp. 862-871
-
-
Shemetulskis, N.E.1
Weininger, D.2
Blankley, C.J.3
Yang, J.J.4
Humblet, C.5
-
27
-
-
0038170311
-
Similarity metrics for ligands reflecting the similarity of the target proteins
-
Schuffenhauer, A.; Floersheim, P.; Acklin, P.; Jacoby, E. Similarity metrics for ligands reflecting the similarity of the target proteins. J. Chem. Inf. Comput. Sci. 2003, 43 (2), 391-405.
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, Issue.2
, pp. 391-405
-
-
Schuffenhauer, A.1
Floersheim, P.2
Acklin, P.3
Jacoby, E.4
-
28
-
-
0043201432
-
Profile scaling increases the similarity search performance of molecular fingerprints containing numerical descriptors and structural keys
-
Xue, L.; Godden, J. W.; Stahura, F. L.; Bajorath, J. Profile scaling increases the similarity search performance of molecular fingerprints containing numerical descriptors and structural keys. J. Chem. Inf. Comput. Sci. 2003, 43 (4), 1218-1225
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, Issue.4
, pp. 1218-1225
-
-
Xue, L.1
Godden, J.W.2
Stahura, F.L.3
Bajorath, J.4
-
29
-
-
2942700377
-
Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures
-
Hert, J.; Willett, P.; Wilton, D. J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures. J. Chem. Inf. Comput. Sci. 2004, 44 (3), 1177-1185
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, Issue.3
, pp. 1177-1185
-
-
Hert, J.1
Willett, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
-
30
-
-
33646249968
-
New methods for ligand-based virtual screening: Use of data fusion and machine learning to enhance the effectiveness of similarity searching
-
Hert, J.; Willett, P.; Wilton, D. J.; Acklin, P.; Azzaoui, K.; Jacoby, E.; Schuffenhauer, A. New methods for ligand-based virtual screening: use of data fusion and machine learning to enhance the effectiveness of similarity searching. J. Chem. Inf. Model. 2006, 46 (2), 462-470
-
(2006)
J. Chem. Inf. Model.
, vol.46
, Issue.2
, pp. 462-470
-
-
Hert, J.1
Willett, P.2
Wilton, D.J.3
Acklin, P.4
Azzaoui, K.5
Jacoby, E.6
Schuffenhauer, A.7
-
31
-
-
5444268169
-
Enhancing the effectiveness of virtual screening by fusing nearest neighbor lists: A comparison of similarity coefficients
-
Whittle, M.; Gillet, V. J.; Willett, P.; Alex, A.; Loesel, J. Enhancing the effectiveness of virtual screening by fusing nearest neighbor lists: a comparison of similarity coefficients. J. Chem. Inf. Comput. Sci. 2004, 44 (5), 1840-1848
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, Issue.5
, pp. 1840-1848
-
-
Whittle, M.1
Gillet, V.J.2
Willett, P.3
Alex, A.4
Loesel, J.5
-
32
-
-
3042809615
-
Towards a structural classification of phosphate binding sites in protein-nucleotide complexes: An automated all-against-all structural comparison using geometric matching
-
Brakoulias, A.; Jackson, R. M. Towards a structural classification of phosphate binding sites in protein-nucleotide complexes: an automated all-against-all structural comparison using geometric matching. Proteins 2004, 56 (2), 250-260
-
(2004)
Proteins
, vol.56
, Issue.2
, pp. 250-260
-
-
Brakoulias, A.1
Jackson, R.M.2
-
33
-
-
70350027723
-
-
Openeye Scientific Software, Inc.: Santa Fe, NM
-
ROCS, Version 2.3.1; Openeye Scientific Software, Inc.: Santa Fe, NM, 2007.
-
(2007)
ROCS, Version 2.3.1
-
-
-
35
-
-
33745359822
-
The Blue Obelisk- interoperability in chemical informatics
-
Guha, R.; Howard, M. T.; Hutchison, G. R.; Murray-Rust, P.; Rzepa, H.; Steinbeck, C.; Wegner, J.; Willighagen, E. L. The Blue Obelisk- interoperability in chemical informatics. J. Chem. Inf. Model. 2006, 46 (3), 991-998
-
(2006)
J. Chem. Inf. Model.
, vol.46
, Issue.3
, pp. 991-998
-
-
Guha, R.1
Howard, M.T.2
Hutchison, G.R.3
Murray-Rust, P.4
Rzepa, H.5
Steinbeck, C.6
Wegner, J.7
Willighagen, E.L.8
-
36
-
-
41449114598
-
Community benchmarks for virtual screening
-
Irwin, J. J. Community benchmarks for virtual screening. J. Comput.- Aided Mol. Des. 2008, 22 (3-4), 193-199
-
(2008)
J. Comput.- Aided Mol. Des.
, vol.22
, Issue.3-4
, pp. 193-199
-
-
Irwin, J.J.1
-
37
-
-
70350013300
-
-
Openeye Scientific Software, Inc.: Santa Fe, NM
-
OMEGA, Version 2.2.1; Openeye Scientific Software, Inc.: Santa Fe, NM, 2007.
-
(2007)
OMEGA, Version 2.2.1
-
-
-
38
-
-
0347296066
-
Assessing the performance of OMEGA with respect to retrieving bioactive conformations
-
Bostrom, J.; Greenwood, J. R.; Gottfries, J. Assessing the performance of OMEGA with respect to retrieving bioactive conformations. J. Mol. Graphics Modell. 2003, 21 (5), 449-462
-
(2003)
J. Mol. Graphics Modell.
, vol.21
, Issue.5
, pp. 449-462
-
-
Bostrom, J.1
Greenwood, J.R.2
Gottfries, J.3
-
39
-
-
33746921247
-
Comparative performance assessment of the conformational model generators omega and catalyst: A large-scale survey on the retrieval of protein-bound ligand conformations
-
Kirchmair, J.; Wolber, G.; Laggner, C.; Langer, T. Comparative performance assessment of the conformational model generators omega and catalyst: a large-scale survey on the retrieval of protein-bound ligand conformations. J. Chem. Inf. Model. 2006, 46 (4), 184-861.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, Issue.4
, pp. 184-861
-
-
Kirchmair, J.1
Wolber, G.2
Laggner, C.3
Langer, T.4
-
40
-
-
0033954256
-
The protein data bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. The Protein Data Bank. Nucleic Acids Res. 2000, 28 (1), 235-242
-
(2000)
Nucleic Acids Res.
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
43
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F.; Gish, W.; Miller, W.; Myers, E. W.; Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 1990, 215 (3), 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
44
-
-
0030943408
-
Selecting optimally diverse compounds from structure databases: A validation study of two-dimensional and three-dimensional molecular descriptors
-
Matter, H. Selecting optimally diverse compounds from structure databases: a validation study of two-dimensional and three-dimensional molecular descriptors. J. Med. Chem. 1997, 40 (8), 1219-1229
-
(1997)
J. Med. Chem.
, vol.40
, Issue.8
, pp. 1219-1229
-
-
Matter, H.1
-
45
-
-
5444258174
-
Comparison of 2D similarity and 3D superposition. Application to searching a conformational drug database
-
Thimm, M.; Goede, A.; Hougardy, S.; Preissner, R. Comparison of 2D similarity and 3D superposition. Application to searching a conformational drug database. J. Chem. Inf. Comput. Sci. 2004, 44 (5), 1816-22.
-
(2004)
J. Chem. Inf. Comput. Sci.
, vol.44
, Issue.5
, pp. 1816-1822
-
-
Thimm, M.1
Goede, A.2
Hougardy, S.3
Preissner, R.4
-
46
-
-
61449173017
-
The protein-small-molecule database, a non- redundant structural resource for the analysis of protein-ligand binding
-
Wallach, I.; Lilien, R. The protein-small-molecule database, a non- redundant structural resource for the analysis of protein-ligand binding. Bioinformatics 2009, 25 (5), 615-620.
-
(2009)
Bioinformatics
, vol.25
, Issue.5
, pp. 615-620
-
-
Wallach, I.1
Lilien, R.2
-
47
-
-
41349093326
-
What do we know and when do we know it
-
Nicholls, A. What do we know and when do we know it. J. Comput.-Aided Mol. Des. 2008, 22 (3-4), 239-255
-
(2008)
J. Comput.-Aided Mol. Des.
, vol.22
, Issue.3-4
, pp. 239-255
-
-
Nicholls, A.1
-
48
-
-
65249170904
-
Binding site similarity analysis for the functional classification of the protein kinase family
-
Kinnings, S. L.; Jackson, R. M. Binding site similarity analysis for the functional classification of the protein kinase family. J. Chem. Inf. Model. 2009, 49 (2), 318-329
-
(2009)
J. Chem. Inf. Model.
, vol.49
, Issue.2
, pp. 318-329
-
-
Kinnings, S.L.1
Jackson, R.M.2
-
49
-
-
18344395134
-
Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site
-
Pargellis, C.; Tong, L.; Churchill, L.; Cirillo, P. F.; Gilmore, T.; Graham, A. G.; Grob, P. M.; Hickey, E. R.; Moss, N.; Pav, S.; Regan, J. Inhibition of p38 MAP kinase by utilizing a novel allosteric binding site. Nat. Struct. Biol. 2002, 9 (4), 268-272
-
(2002)
Nat. Struct. Biol.
, vol.9
, Issue.4
, pp. 268-272
-
-
Pargellis, C.1
Tong, L.2
Churchill, L.3
Cirillo, P.F.4
Gilmore, T.5
Graham, A.G.6
Grob, P.M.7
Hickey, E.R.8
Moss, N.9
Pav, S.10
Regan, J.11
-
50
-
-
41349093325
-
Multiple protein structures and multiple ligands: Effects on the apparent goodness of virtual screening results
-
Sheridan, R. P.; McGaughey, G. B.; Cornell, W. D. Multiple protein structures and multiple ligands: effects on the apparent goodness of virtual screening results. J. Comput.-Aided Mol. Des. 2008, 22 (3-4), 257-265
-
(2008)
J. Comput.-Aided Mol. Des.
, vol.22
, Issue.3-4
, pp. 257-265
-
-
Sheridan, R.P.1
McGaughey, G.B.2
Cornell, W.D.3
|