Evolution of genome size in Hawaiian endemic genus Schiedea (Caryophyllaceae)

Tropical Plant Biology

Volumn 2, Issue 2, 2009, Pages 77-83

  Kapralov, Maxim V ^a   Stift, Marc ^b,c   Filatov, Dmitry A ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b UNIVERSITY OF AMSTERDAM   (Netherlands)

^c UNIVERSITY OF GLASGOW   (United Kingdom)

Author keywords

Adaptive radiation; Caryophyllaceae; Genome size evolution; Hawaiian Islands; Honckenya; Schiedea

Indexed keywords

ALSINOIDEAE; CARYOPHYLLACEAE; HONCKENYA; SCHIEDEA; SCHIEDEA GLOBOSA;

EID: 70349993191     PISSN: 19359756     EISSN: 19359764     Source Type: Journal    
DOI: 10.1007/s12042-009-9029-2     Document Type: Article

References (31)

1. Albach DC, Greilhuber J (2004) Genome size variation and evolution in Veronica. Ann Bot (Lond) 94:897-911. doi:10.1093/aob/mch219.
2. Beaulieu JM, Leitch IJ, Knight CA (2007) Genome size evolution in relation to leaf strategy and metabolic rates revisited. Ann Bot (Lond) 99:495-505. doi:10.1093/aob/mcl271.
3. Bennetzen JL, Ma J, Devos KM (2005) Mechanisms of recent genome size variation in flowering plants. Ann Bot (Lond) 95:127-132. doi:10.1093/aob/mci008.
4. Boşcaiu M, Vicente O, Ehrendorfer F (1999) Chromosome numbers, karyotypes and nuclear DNA contents from perennial polyploid groups of Cerastium (Caryophyllaceae). Plant Syst Evol 218:13-21. doi:10.1007/BF01087030.
5. Bottini MCJ, Greizerstein EJ, Aulicino MB et al (2000) Relationships among genome size, environmental conditions and geographical distribution in natural populations of NW Patagonian species of Berberis L. (Berberidaceae). Ann Bot (Lond) 86:565-573. doi:10.1006/anbo.2000.1218.
6. Brookfield JFY, Badge RM (1997) Population genetics models of transposable elements. Genetica 100:281-294. doi:10.1023/A:1018310418744.
7. Carr G (1985) Additional chromosome numbers of Hawaiian flowering plants. Pac Sci 39:302-306.
8. Comeron JM (2001) What controls the length of noncoding DNA? Curr Opin Genet Dev 11:652-659. doi:10.1016/S0959-437X(00)00249-5.
9. Doležel J, Sgorbati S, Lucretti S (1992) Comparison of three DNA fluorochromes for flow cytometric estimation of nuclear DNA content in plants. Physiol Plant 85:625-631. doi:10.1111/j.1399-3054.1992.tb04764.x.
10. Filatov DA (2002) PROSEQ: A software for preparation and evolutionary analysis of DNA sequence data sets. Mol Ecol Notes 2:621-624. doi:10.1046/j.1471-8286.2002.00313.x.
11. Filatov DA, Burke S (2004) DNA diversity in Hawaiian endemic plant Schiedea globosa. Heredity 92:452-458. doi:10.1038/sj.hdy.6800440.
12. Filatov DA, Charlesworth D (2002) Substitution rates in the X- and Y-Linked genes of the plants, Silene latifolia and S. dioica. Mol Biol Evol 19:898-907.
13. Hawkins JS, Kim HR, Nason JD et al (2006) Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Res 16:1252-1261. doi:10.1101/gr.5282906.
14. Hollocher H (1996) Islands hopping in Drosophila: patterns and processes. Philos Trans R Soc Lond Ser B 351:735-743. doi:10.1098/rstb.1996.0068.
15. Hultén E (1971) The circumpolar plants. II. Dicotyledons. Kungl. Svenska Vetenskapsakademiens Handlingar 13:1-463.
16. Jakob SS, Meister A, Blattner FR (2004) The considerable genome size variation of Hordeum species (Poaceae) is linked to phylogeny, life form, ecology, and speciation rates. Mol Biol Evol 21:860-869. doi:10.1093/molbev/msh092.
17. Kapralov MV, Filatov DA (2006) Molecular adaptation during adaptive radiation in the Hawaiian endemic genus Schiedea. PLoS One 1:e8. doi:10.1371/journal.pone.0000008.
18. Lukens L, Zou F, Lydiate D et al (2003) Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana. Genetics 164:359-372.
19. Malling H (1957) The chromosome number of Honckenya peploides (L.) Ehrh., with a note on its mode of sex determination. Hereditas 43:517-525.
20. Pasyukova EG, Nuzhdin SV, Filatov DA (1998) The relationship between the rate of transposition and transposable element copy number for copia and Doc retrotransposons of Drosophila melanogaster. Genet Res 72:1-11. doi:10.1017/S0016672398003358.
21. Piegu B, Guyot R, Picault N et al (2006) Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res 16:1262-1269. doi:10.1101/gr.5290206.
22. Price JP, Elliott-Fisk D (2004) Topographic history of the Maui Nui complex, Hawai'i, and its implications for biogeography. Pac Sci 58:27-45. doi:10.1353/psc.2004.0008.
23. Riley R (1965) Cytogenetics and evolution of wheat. In: Hutchinson JB (ed) Essays on crop plant evolution. University of Cambridge Press, London.
24. Rozas J, Rozas R (1999) DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175. doi:10.1093/bioinformatics/15.2.174.
25. SanMiguel P, Tikhonov A, Jin YK et al (1996) Nested retrotransposons in the intergenic regions of the maize genome. Science 274:765-768. doi:10.1126/science.274.5288.765.
26. Schluter D (2000) The ecology of adaptive radiation. Oxford University Press, Oxford.
27. Seehausen O (2004) Hybridization and adaptive radiation. Trends Ecol Evol 19:198-207. doi:10.1016/j.tree.2004.01.003.
28. Skottsberg C (1953) Chromosome numbers in Hawaiian flowering plants. Ark Bot 3:63-70.
29. Ungerer MC, Strakosh SC, Ying Z (2006) Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation. Curr Biol 16:872-873. doi:10.1016/j.cub.2006.09.020.
30. Wagner WL, Weller SG, Sakai A (2005) Monograph of Schiedea (Caryophyllaceae subfam. Alsinoideae). Syst Bot Monogr 72:1-169.
31. Wendel JF, Cronn RC, Johnston JS et al (2002) Feast and famine in plant genomes. Genetica 115:37-47. doi:10.1023/A:1016020030189.