Unique genotypes of Mycobacterium avium subsp. paratuberculosis strains of Type III

Veterinary Microbiology

Volumn 139, Issue 3-4, 2009, Pages 398-404

  Möbius, Petra ^a   Fritsch, Isabel ^a   Luyven, Gabriele ^b   Hotzel, Helmut ^a   Köhler, Heike ^a  

^a FEDERAL RESEARCH INSTITUTE FOR ANIMAL HEALTH   (Germany)

^b Chemical and Veterinary Laboratories Agency Rhein Ruhr Wupper   (Germany)

Author keywords

gyrB PCR REA; Intermediate MAP sheep strains; IS900 RFLP; LSP; MIRU VNTR typing; MLSSR

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING) B; GENOMIC DNA; RESTRICTION ENDONUCLEASE;

ARTICLE; BACTERIAL GENETICS; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; BACTERIUM ISOLATION; DNA EXTRACTION; GENETIC VARIABILITY; GENOTYPE; MULTILOCUS SEQUENCE TYPING; MYCOBACTERIUM PARATUBERCULOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SHEEP; VARIABLE NUMBER OF TANDEM REPEAT;

ANIMALS; BACTERIAL TYPING TECHNIQUES; CATTLE; CATTLE DISEASES; GENOTYPE; GERMANY; MYCOBACTERIUM AVIUM; PARATUBERCULOSIS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SHEEP; SHEEP DISEASES;

BOVINAE; MYCOBACTERIUM AVIUM SUBSP. PARATUBERCULOSIS; OVIS ARIES;

EID: 70349976537     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2009.06.011     Document Type: Article

References (30)

1. Amonsin A., Li L.L., Zhang Q., Bannantine J.P., Motiwala A.S., Sreevatsan S., and Kapur V. Multilocus short sequence repeat sequencing approach for differentiating among Mycobacterium avium subsp. paratuberculosis strains. J. Clin. Microbiol. 42 (2004) 1694-1702
2. Bull T.J., Sidi-Boumedine K., McMinn E.J., Stevenson K., Pickup R., and Hermon-Taylor J. Mycobacterial interspersed repetitive units (MIRU) differentiate Mycobacterium avium subspecies paratuberculosis from other species of the Mycobacterium avium complex. Mol. Cell. Probes 17 (2003) 157-164
3. Castellanos E., Aranaz A., Romero B., de Juan L., Alvarez J., Bezos J., Rodríguez S., Stevenson K., Mateos A., and Domíinguez L. Polymorphisms in gyrA and gyrB genes among Mycobacterium avium subsp. paratuberculosis type I, II, and III isolates. J. Clin. Microbiol. 45 (2007) 3439-3442
4. Castellanos E., Aranaz A., Gould K.A., Linedale R., Stevenson K., Alvarez J., Domínguez L., de Juan L., Hinds J., and Bull T.J. Discovery of stable and variable differences in the Mycobacterium avium subsp. paratuberculosis type I, II, and III genomes by pan-genome microarray analysis. Appl. Environ. Microbiol. 75 (2009) 676-686
5. Collins D.M., Gabric D.M., and de Lisle G.W. Identification of two groups of Mycobacterium paratuberculosis strains by restriction endonuclease analysis and DNA hybridization. J. Clin. Microbiol. 28 (1990) 1591-1596
6. Cousins D.V., Williams S.N., Hope A., and Eamens G.J. DNA fingerprinting of Australian isolates of Mycobacterium avium subsp. paratuberculosis using IS900 RFLP. Aust. Vet. J. 78 (2000) 184-190
7. de Juan L., Mateos A., Domínguez L., Sharp J.M., and Stevenson K. Genetic diversity of Mycobacterium avium subspecies paratuberculosis isolates from goats detected by pulsed-field gel electrophoresis. Vet. Microbiol. 106 (2005) 249-257
8. de Juan L., Alvarez J., Aranaz A., Rodríguez A., Romero B., Bezos J., Mateos A., and Domínguez L. Molecular epidemiology of Types I/III strains of Mycobacterium avium subspecies paratuberculosis isolated from goats and cattle. Vet. Microbiol. 115 (2006) 102-110
9. de Lisle G.W., Collins D.M., and Huchzermeyer H.F. Characterization of ovine strains of Mycobacterium paratuberculosis by restriction endonuclease analysis and DNA hybridization. Onderstepoort J. Vet. Res. 59 (1992) 163-165
10. de Lisle G.W., Yates G.F., and Collins D.M. Paratuberculosis in farmed deer: case reports and DNA characterization of isolates of Mycobacterium paratuberculosis. J. Vet. Diagn. Invest. 5 (1993) 567-571
11. Englund S., Ballagi-Pordány A., Bölske G., and Johansson K.E. Single PCR and nested PCR with a mimic molecule for detection of Mycobacterium avium subsp. paratuberculosis. Diagn. Microbiol. Infect. Dis. 33 (1999) 163-171
12. Ghadiali A.H., Strother M., Naser S.A., Manning E.J., and Sreevatsan S. Mycobacterium avium subsp. paratuberculosis strains isolated from Crohn's disease patients and animal species exhibit similar polymorphic locus patterns. J. Clin. Microbiol. 42 (2004) 5345-5348
13. Griffiths T.A., Rioux K., and De Buck J. Sequence polymorphisms in a surface PPE protein distinguish types I, II, and III of Mycobacterium avium subsp. paratuberculosis. J. Clin. Microbiol. 46 (2008) 1207-1212
14. Kunze Z.M., Portaels V., and McFadden J.J. Biologically distinct subtypes of Mycobacterium avium differ in possession of insertion sequence IS901. J. Clin. Microbiol. 30 (1992) 2366-2372
15. Möbius P., Luyven G., Hotzel H., and Köhler H. High genetic diversity among Mycobacterium avium subsp. paratuberculosis strains from German cattle herds shown by combination of IS900 restriction fragment length polymorphism analysis and mycobacterial interspersed repetitive unit-variable-number tandem-repeat typing. J. Clin. Micobiol. 46 (2008) 972-981
16. Overduin P., Schouls L., Roholl P., van der Zanden A., Mahmmod N., Herrewegh A., and van Soolingen D. Use of multilocus variable-number tandem-repeat analysis for typing Mycobacterium avium subsp. paratuberculosis. J. Clin. Microbiol. 42 (2004) 5022-5028
17. Pavlik I., Horvathova A., Dvorska L., Bartl J., Svastova P., du Maine R., and Rychlik I. Standardisation of restriction fragment length polymorphism analysis for Mycobacterium avium subsp. paratuberculosis. J. Microbiol. Meth. 38 (1999) 155-167
18. Semret M., Turenne C.Y., de Haas P., Collins D.M., and Behr M.A. Differentiating host-associated variants of Mycobacterium avium by PCR for detection of large sequence polymorphisms. J. Clin. Microbiol. 44 (2006) 881-887
19. Sevilla I., Singh S.V., Garrido J.M., Aduriz G., Rodríguez S., Geijo M.V., Whittington R.J., Saunders V., Whitlock R.H., and Juste R.A. Molecular typing of Mycobacterium avium subspecies paratuberculosis strains from different hosts and regions. Rev. Sci. Technol. 24 (2005) 1061-1066
20. Sevilla I., Garrido J.M., Geijo M., and Juste R.A. Pulsed-field gel electrophoresis profile homogeneity of Mycobacterium avium subsp. paratuberculosis isolates from cattle and heterogeneity of those from sheep and goats. BMC Microbiol. 7 (2007) 18
21. Sevilla I., Li L., Amonsin A., Garrido J.M., Geijo M.V., Kapur V., and Juste R.A. Comparative analysis of Mycobacterium avium subsp. paratuberculosis isolates from cattle, sheep and goats by short sequence repeat and pulsed-field gel electrophoresis typing. BMC Microbiol. 8 (2008) 204
22. Stevenson K., Hughes V.M., de Juan L., Inglis N.F., Wright F., and Sharp J.M. Molecular characterization of pigmented and nonpigmented isolates of Mycobacterium avium subsp. paratuberculosis. J. Clin. Microbiol. 40 (2002) 1798-1804
23. Thibault V.C., Grayon M., Boschiroli M.L., Hubbans C., Overduin P., Stevenson K., Gutierrez M.C., Supply P., and Biet F. New variable-number tandem-repeat markers for typing Mycobacterium avium subsp. paratuberculosis and M. avium strains: comparison with IS900 RFLP and IS1245 restriction fragment length polymorphism typing. J. Clin. Microbiol. 45 (2007) 2404-2410
24. Thibault V.C., Grayon M., Boschiroli M.L., Willery E., Allix-Béquec C., Stevenson K., Biet F., and Supply P. Combined multilocus short-sequence-repeat and mycobacterial interspersed repetitive unit-variable-number tandem-repeat typing of Mycobacterium avium subsp. paratuberculosis isolates. J. Clin. Microbiol. 46 (2008) 4091-4094
25. Turenne C.Y., Wallace Jr. R., and Behr M.A. Mycobacterium avium in the postgenomic era. Clin. Microbiol. Rev. 20 (2007) 205-229
26. Turenne C.Y., Collins D.M., Alexander D.C., and Behr M.A. Mycobacterium avium subsp. parauberculosis and M. avium subsp. avium are independently evolved pathogenic clones of a much broader group of M. avium organisms. J. Bacteriol. 190 (2008) 2479-2487
27. van Soolingen D., Hermans P.W., de Haas P.E., Soll D.R., and van Embden J.D. Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J. Clin. Microbiol. 29 (1991) 2578-2586
28. Whittington R., Marsh I., Choy E., and Cousins D. Polymorphisms in IS1311, an insertion sequence common to Mycobacterium avium and M. avium subsp. paratuberculosis, can be used to distinguish between and within these species. Mol. Cell. Probes 12 (1998) 349-358
29. Whittington R., Marsh I., and Whitlock R.H. Typing of IS1311 polymorphisms confirms that bison (Bison bison) with paratuberculosis in Montana are infected with a strain of Mycobacterium avium subsp. paratuberculosis distinct from that occurring in cattle and other domesticated livestock. Mol. Cell. Probes 15 (2001) 139-145
30. Yadav D., Singh S.V., Singh A.V., Sevilla I., Juste R.A., Singh P.K., and Sohal J.S. Pathogenic 'Bison-type' Mycobacterium avium subspecies paratuberculosis genotype characterized from riverine buffalo (Bubalus bubalis) in North India. Comp. Immunol. Microbiol. Infect. Dis. 31 (2008) 373-387