Variation and phylogeny of fusarium oxysporum isolates based on nucleotide sequences of polygalacturonase genes

Microbes and Environments

Volumn 24, Issue 2, 2009, Pages 113-120

  Hirano, Yasushi ^a   Arie, Tsutomu ^b  

^a Saitama Prefectural Agriculture and Forestry Research Center   (Japan)

^b TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

Author keywords

Fusarium oxysporum; Genetic variation; Molecular evolution; Phylogenetic tree; Polygalacturonase

Indexed keywords

FUSARIUM OXYSPORUM;

EID: 70349915887     PISSN: 13426311     EISSN: 13426311     Source Type: Journal    
DOI: 10.1264/jsme2.ME08554     Document Type: Article

References (31)

1. Appel, D. J., and T. R. Gordon. 1996. Relationships among pathogenic and nonpathogenic isolates of Fusarium oxysporum based on the partial sequence of the intergenic spacer region of the ribosomal DNA. Mol. Plant-Microbe Interact. 9:125-139.
2. Arie, T., I. Kaneko, T. Yoshida, M. Noguchi, Y. Nomura, and I. Yamaguchi. 2000. Mating-type genes from asexual phytopathogenic ascomycetes Fusarium oxysporum and Alternaria alternata. Mol. Plant-Microbe Interact. 13:1330-1339.
3. Armstrong, G. M., and J. K. Armstrong. 1981. Formae speciales and races of Fusarium oxysporum causing wilt diseases, p. 391-399. In P. E. Nelson, T. A. Toussoun, and R. J. Cook (ed.), Fusarium: Diseases, Biology, and Taxonomy, The Pennsylvania State University Press, University Park. USA.
4. Baayen, R. P., K. O'Donnell, P. J. M. Bonants, E. Cigelnik, L.P.N.M. Kroon, E.J.A. Roebroeck, and C. Waalwijk. 2000. Gene genealogies and AFLP analyses in the Fusarium oxysporum complex identify monophyletic and nonmonophyletic formae speciales causing wilt and rot disease. Phytopathology 90:891-900.
5. Barns, S. M., D. J. Lane, M. L. Sogin, C. Bibeau, and W. G. Weisburg. 1991. Evolutionary relationships among pathogenic Candida species and relatives. J. Bacteriol. 173:2250-2255.
6. Correll, J. C. 1991. The relationship between formae speciales, races, and vegetative compatibility groups in Fusarium oxysporum. Phytopathology 81:l061-1064.
7. Crow, J. F. 1988. The importance of recombination, p. 56-73. In R. E. Michod, and B. R. Leven (ed.), The Evolution of Sex: An Examination of Current Ideas, Sinauer Associates, Sunderland, USA.
8. Fernandez, D., K. Assigbetse, M. Dubois, and J. P. Geiger. 1994. Molecular characterization of races and vegetative compatibility groups in Fusarium oxysporum f. sp. vasinfectum. Appl. Environ. Microbiol. 60:4039-4046.
9. Fitch, W. M. 1977. On the problem of discovering the most parsimonious tree. Am. Nat. 111:223-257.
10. Gale, L. R., T. Katan, and H. C. Kistler. 2003. The probable center of origin of Fusarium oxysporum f. sp. lycopersici VCG 0033. Plant Dis. 87:1433-1438.
11. Goodwin, S. B., and V. L. Zismann. 2001. Phylogenetic analyses of the ITS region of ribosomal DNA reveal that Septoria passerinii from barley is closely related to the wheat pathogen Mycosphaerella graminicola. Mycologia 93:934-946.
12. Hirano, Y., and T. Arie. 2006. PCR-based differentiation of Fusarium oxysporum ff. sp. lycopersici and radicis-lycopersici, and races in F. oxysporum f. sp. lycopersici. J. Gen. Plant Pathol. 72:273-283.
13. Kawabe, M., Y. Kobayashi, G. Okada, I. Yamaguchi, T. Teraoka, and T. Arie. 2005. Three evolutionary lineages of tomato wilt pathogen, Fusarium oxysporum f. sp. lycopersici, based on sequences of IGS, MAT1 and pg1 are each composed of isolates of a single mating type, and a single or closely related vegetative compatibility groups. J. Gen. Plant Pathol. 71:263-272.
14. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
15. Kimura, M., T. Tokai, N. Takahashi-Ando, S. Ohsato, and M. Fujimura. 2007. Molecular and genetic studies of Fusarium trichothecene biosynthesis: Pathways, genes, and evolution. Biosci. Biotechnol. Biochem. 71:2105-2123.
16. Kistler, H. C., E. A. Momol, and U. Benny. 1991. Repetitive genomic sequences for determining relatedness among strains of Fusarium oxysporum. Phytopathology 81:331-336.
17. Kistler, H. C. 1997. Genetic diversity in the plant-pathogenic fungus Fusarium oxysporum. Phytopathology 87:474-479.
18. Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5:150-163.
19. Leslie, J. F. 1993. Fungal vegetative compatibility. Annu. Rev. Phytopathol. 31:127-150.
20. Manicom, B. Q., and R. P. Baayen. 1993. Restriction fragment length polymorphisms in Fusarium oxysporum f. sp. dianthi and other fusaria from Dianthus species. Plant Pathol. 42:851-857.
21. Namiki, F., T. Shiomi, T. Kayamura, and T. Tsuge. 1994. Characterization of the formae speciales of Fusarium oxysporum causing wilts of cucurbits by DNA fingerprinting with nuclear repetitive DNA sequences. Appl. Environ. Microbiol. 60:2684-2691.
22. O'Donnell, K., H. C. Kistler, E. Cigelnik, and R. C. Ploetz. 1998. Multiple evolutionary origins of the fungus causing Panama disease of banana: Concordant evidence from nuclear and mitochondrial gene genealogies. Proc. Natl. Acad. Sci. USA 95:2044-2049.
23. Puhalla, J. E. 1985. Classification of strains of Fusarium oxysporum on the basis of vegetative compatibility. Can. J. Bot. 63:179-183.
24. Rzhetsky, A., and M. Nei. 1993. Theoretical foundation of the minimum-evolution method of phylogenetic inference. Mol. Biol. Evol. 10:1073-1095.
25. Saiou, N., and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic tree. Mol. Biol. Evol. 4:406-425.
26. Schilling, A. G., E. M. Möller, and H. H. Geiger. 1996. Polymerase chain reaction-base assays for species-specific detection of Fusarium culmorum, F. graminearum, and F. avenaceum. Phytopathology 86:515-522.
27. Taylor, J. W., D. J. Jacobson, and M. C. Fisher. 1999. The evolution of asexual fungi: Reproduction, speciation and classification. Annu. Rev. Phytopathol. 37:197-246.
28. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
29. van der Dose, H. C., B. Lievens, L. Claes, P. M. Houterman, B. J. C. Cornelissen, and M. Rep. 2008. The presence of a virulence locus discriminates Fusarium oxysporum isolates causing tomato wilt from other isolates. Environ. Microbiol. 10:1475-1485.
30. Verkley, G. J. M., M. Starink-Willemse, A. van Iperen, and E. C. A. Abeln. 2004. Phylogenetic analyses of Septoria species based on the ITS and LSU-D2 regions of nuclear ribosomal DNA. Mycologia 31:558-571.
31. Woo, S. L., A. Zoina, G. Del Sorbo, M. Lorito, B. Nanni, F. Scala, and C. Noviello. 1996. Characterization of Fusarium oxysporum f. sp. phaseoli by pathogenic races, VCGs, RFLPs, and RAPD. Phytopathology 86:966-973.