PhyloDet: A scalable visualization tool for mapping multiple traits to large evolutionary trees

Bioinformatics

Volumn 25, Issue 19, 2009, Pages 2611-2612

  Lee, Bongshin ^a   Nachmanson, Lev ^a   Robertson, George ^a   Carlson, Jonathan M ^a   Heckerman, David ^a  

^a MICROSOFT RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIRETROVIRUS AGENT; NUCLEOSIDE ANALOG; PROTEINASE INHIBITOR; RNA DIRECTED DNA POLYMERASE INHIBITOR;

ARTICLE; COHORT ANALYSIS; CORRELATION ANALYSIS; DATA ANALYSIS SOFTWARE; GENE MAPPING; HIGHLY ACTIVE ANTIRETROVIRAL THERAPY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MATHEMATICAL COMPUTING; NONHUMAN; PHYLOGENETIC TREE; PRIORITY JOURNAL; RISK FACTOR; VIRUS MUTATION; VIRUS RESISTANCE;

COMPUTATIONAL BIOLOGY; EVOLUTION, MOLECULAR; PHYLOGENY; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 70349885491     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp454     Document Type: Article

References (6)

1. Carlson,J.M., et al. (2008) Phylogenetic dependency networks: Inferring patterns of CTLescape and codon covariation in HIV-1 Gag. PLoS Comput. Biol., 4, e1000225.
2. Felsenstein,J. (1985) Phylogenies and the comparative method. Am. Nat., 125, 1-15.
3. Harrigan,P.R. et al. (2005) Predictors of HIV drug-resistance mutations in a large antiretroviral-naive cohort initiating triple antiretroviral therapy. J. Infect. Dis., 191, 339-347.
4. Lee,B. et al. (2008) Det. (Distance Encoded Tree): A scalable visualization tool for mapping multiple traits to large evolutionary trees. MSR Tech Report MSR-TR- 2008-97, Microsoft Research.
5. Matthews,P.C. et al. (2009) HLA footprints on HIV-1 are associated with inter-clade polymorphisms and intra-clade phylogenetic clustering. J. Virol., 83, 4605-4615.
6. Weiss,R. (2003) HIV and AIDS: Looking Ahead. Nat. Med., 9, 887-891.