Corrigendum to "Ligand-Induced Conformational Rearrangements Promote Interaction between the Escherichia coli Enterobactin Biosynthetic Proteins EntE and EntB" [J. Mol. Biol. (2009) 393, 658-671] (DOI:10.1016/j.jmb.2009.08.036);Ligand-Induced Conformational Rearrangements Promote Interaction between the Escherichia coli Enterobactin Biosynthetic Proteins EntE and EntB

Journal of Molecular Biology

Volumn 393, Issue 3, 2009, Pages 658-671

  Khalil, Sofia ^a   Pawelek, Peter D ^a  

^a Gina Cody School of Engineering and Computer Science   (Canada)

Author keywords

enterobactin; FRET; protein protein interactions; siderophore; substrate channeling

Indexed keywords

2,3 DIHYDROXYBENZOIC ACID; ALPHA RESORCYLIC ACID; BACTERIAL ENZYME; ENTEROCHELIN; PROTEIN ENTB; PROTEIN ENTE; UNCLASSIFIED DRUG;

ARTICLE; BIOSYNTHESIS; CIRCULAR DICHROISM; COMPLEX FORMATION; CONFORMATIONAL TRANSITION; ENZYME ACTIVITY; ESCHERICHIA COLI; FLUORESCENCE RESONANCE ENERGY TRANSFER; ISOTHERMAL TITRATION CALORIMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; ULTRAVIOLET RADIATION;

ESCHERICHIA COLI;

EID: 70349787369     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2009.10.050     Document Type: Erratum

References (28)

1. Wandersman C., and Delepelaire P. Bacterial iron sources: from siderophores to hemophores. Annu. Rev. Microbiol. 58 (2004) 611-647
2. Miethke M., and Marahiel M.A. Siderophore-based iron acquisition and pathogen control. Microbiol. Mol. Biol. Rev. 71 (2007) 413-451
3. Raymond K.N., Dertz E.A., and Kim S.S. Enterobactin: an archetype for microbial iron transport. Proc. Natl Acad. Sci. USA 100 (2003) 3584-3588
4. Ma L., Kaserer W., Annamalai R., Scott D.C., Jin B., Jiang X.X., et al. Evidence of ball-and-chain transport of ferric enterobactin through FepA. J. Biol. Chem. 282 (2007) 397-406
5. Fischbach M.A., Lin H., Liu D.R., and Walsh C.T. How pathogenic bacteria evade mammalian sabotage in the battle for iron. Nat. Chem. Biol. 2 (2006) 132-138
6. Fischbach M.A., Lin H., Zhou L., Yu Y., Abergel R.J., Liu D.R., et al. The pathogen-associated iroA gene cluster mediates bacterial evasion of lipocalin 2. Proc. Natl Acad. Sci. USA 103 (2006) 16502-16507
7. Liu J., Duncan K., and Walsh C.T. Nucleotide sequence of a cluster of Escherichia coli enterobactin biosynthesis genes: identification of entA and purification of its product 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase. J. Bacteriol. 171 (1989) 791-798
8. Nahlik M.S., Fleming T.P., and McIntosh M.A. Cluster of genes controlling synthesis and activation of 2,3-dihydroxybenzoic acid in production of enterobactin in Escherichia coli. J. Bacteriol. 169 (1987) 4163-4170
9. Nahlik M.S., Brickman T.J., Ozenberger B.A., and McIntosh M.A. Nucleotide sequence and transcriptional organization of the Escherichia coli enterobactin biosynthesis cistrons entB and entA. J. Bacteriol. 171 (1989) 784-790
10. Ozenberger B.A., Brickman T.J., and McIntosh M.A. Nucleotide sequence of Escherichia coli isochorismate synthetase gene entC and evolutionary relationship of isochorismate synthetase and other chorismate-utilizing enzymes. J. Bacteriol. 171 (1989) 775-783
11. Woodrow G.C., Young I.G., and Gibson F. Mu-induced polarity in the Escherichia coli K-12 ent gene cluster: evidence for a gene (entG) involved in the biosynthesis of enterochelin. J. Bacteriol. 124 (1975) 1-6
12. Gehring A.M., Mori I., and Walsh C.T. Reconstitution and characterization of the Escherichia coli enterobactin synthetase from EntB, EntE, and EntF. Biochemistry 37 (1998) 2648-2659
13. Lambalot R.H., Gehring A.M., Flugel R.S., Zuber P., LaCelle M., Marahiel M.A., et al. A new enzyme superfamily-the phosphopantetheinyl transferases. Chem. Biol. 3 (1996) 923-936
14. Leduc D., Battesti A., and Bouveret E. The Hotdog thioesterase EntH (YbdB) plays a role in vivo in optimal enterobactin biosynthesis by interacting with the ArCP domain of EntB. J. Bacteriol. 189 (2007) 7112-7126
15. Guo Z.F., Sun Y., Zheng S., and Guo Z. Preferential hydrolysis of aberrant intermediates by the type II thioesterase in Escherichia coli nonribosomal enterobactin synthesis: substrate specificities and mutagenic studies on the active-site residues. Biochemistry 48 (2009) 1712-1722
16. Chen D., Wu R., Bryan T.L., and Dunaway-Mariano D. In vitro kinetic analysis of substrate specificity in enterobactin biosynthetic lower pathway enzymes provides insight into the biochemical function of the hot dog-fold thioesterase EntH. Biochemistry 48 (2009) 511-513
17. Rusnak F., Faraci W.S., and Walsh C.T. Subcloning, expression, and purification of the enterobactin biosynthetic enzyme 2,3-dihydroxybenzoate-AMP ligase: demonstration of enzyme-bound (2,3-dihydroxybenzoyl)adenylate product. Biochemistry 28 (1989) 6827-6835
18. Ehmann D.E., Shaw-Reid C.A., Losey H.C., and Walsh C.T. The EntF and EntE adenylation domains of Escherichia coli enterobactin synthetase: sequestration and selectivity in acyl-AMP transfers to thiolation domain cosubstrates. Proc. Natl Acad. Sci. USA 97 (2000) 2509-2514
19. Drake E.J., Nicolai D.A., and Gulick A.M. Structure of the EntB multidomain nonribosomal peptide synthetase and functional analysis of its interaction with the EntE adenylation domain. Chem. Biol. 13 (2006) 409-419
20. May J.J., Kessler N., Marahiel M.A., and Stubbs M.T. Crystal structure of DhbE, an archetype for aryl acid activating domains of modular nonribosomal peptide synthetases. Proc. Natl Acad. Sci. USA 99 (2002) 12120-12125
21. Willard L., Ranjan A., Zhang H., Monzavi H., Boyko R.F., Sykes B.D., and Wishart D.S. VADAR: a web server for quantitative evaluation of protein structure quality. Nucleic Acids Res. 31 (2003) 3316-3319
22. Callahan B.P., Lomino J.V., and Wolfenden R. Nanomolar inhibition of the enterobactin biosynthesis enzyme, EntE: synthesis, substituent effects, and additivity. Bioorg. Med. Chem. Lett. 16 (2006) 3802-3805
23. Miethke M., Bisseret P., Beckering C.L., Vignard D., Eustache J., and Marahiel M.A. Inhibition of aryl acid adenylation domains involved in bacterial siderophore synthesis. FEBS J. 273 (2006) 409-419
24. Liu J., Quinn N., Berchtold G.A., and Walsh C.T. Overexpression, purification, and characterization of isochorismate synthase (EntC), the first enzyme involved in the biosynthesis of enterobactin from chorismate. Biochemistry 29 (1990) 1417-1425
25. Jaroszewski L., Rychlewski L., Li Z., Li W., and Godzik A. FFAS03: a server for profile-profile sequence alignments. Nucleic Acids Res. 33 (2005) W284-W288
26. Sali A., and Blundell T.L. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol. 234 (1993) 779-815
27. Kleywegt G.J. Experimental assessment of differences between related protein crystal structures. Acta Crystallogr. Sect. D 55 (1999) 1878-1884
28. Kitagawa M., Ara T., Arifuzzaman M., Ioka-Nakamichi T., Inamoto E., Toyonaga H., and Mori H. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 (2005) 291-299