Distribution of potentiaily hairpin-loop structures in the genome of bovine retroviruses

Voprosy Virusologii

Volumn 54, Issue 4, 2009, Pages 27-32

  Limanskaya, O Yu ^a,b   Limansky, A P ^a  

^a The National Academy of Medical Sciences of Ukraine   (Ukraine)

^b Institute of Experimental and Clinical Veterinary Medicine   (Ukraine)

Author keywords

Atomic force microscopy; Bovine immunodeficiency virus; Bovine leukemia virus; Cruciform structure; Hairpin loop structure; Inverted repeat

Indexed keywords

BOVINAE; BOVINE IMMUNODEFICIENCY VIRUS; BOVINE LEUKEMIA VIRUS;

VIRUS DNA;

ANIMAL; ARTICLE; BOVINE IMMUNODEFICIENCY LIKE VIRUS; BOVINE LEUKEMIA VIRUS; CATTLE; CHEMISTRY; CONFORMATION; GENETICS; INVERTED REPEAT; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; VIRUS GENOME;

ANIMALS; BASE SEQUENCE; CATTLE; DNA, VIRAL; GENOME, VIRAL; IMMUNODEFICIENCY VIRUS, BOVINE; INVERTED REPEAT SEQUENCES; LEUKEMIA VIRUS, BOVINE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION;

EID: 70349785267     PISSN: 05074088     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (15)

1. Chatberg M. D., Englund P. T. The effect of template secondary structure on vaccinia DNA polymerase // J. Biol. Chem. - 1979. - Vol. 254. - P. 7820-7826. (Pubitemid 10230245)
2. Gillet N., Florins A., Boxus M. Mechanisms of leukemogenesis induced by bovine leukemia virus: prospects for novel anti-ret-roviral therapies in human // Retrovirology. - 2007. - Vol. 4, N 18. - P. 1-32.
3. Gonda M., Luther D., Fong S., Tobin J. Bovine immunodeficiency virus: molecular biology and virus-host interactions // Virus Res. - 1994. - Vol. 32, N 2. - P. 155-181. (Pubitemid 24147715)
4. Kaguni L. S., Clayton D. A. Template-directed pausing in in vitro DNA synthesis by DNA polymerase a from Drosophila met-anogaster embryos // Proc. Natl. Acad. Sci. USA. - 1982. - Vol. 79, N 4. - P. 983-987. (Pubitemid 12114048)
5. Kang S., Ohshima K., Shimizu M. et al. Pausing of DNA synthesis in vitro at specific loci in CTG and COG triplet repeats from human hereditary disease genes // J. Biol. Chem. - 1995. -Vol. 270, N 45. - P. 27014-27021.
6. Kim E., Peng H., Esparza F. et al. Cruciform-extruding regulatory element controls cell-specific activity of the tyrosine hydroxylase gene promoter // Nucl. Acids Res. - 1998. - Vol. 26, N 7. - P. 1793-1800. (Pubitemid 28291818)
7. Komissarova N., Kashlev M. Transcriptional arrest: Esclierichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded // Proc. Natl. Acad. Sci. USA. - 1997. - Vol. 94, N 5. - P. 1755-1760.
8. Palecek E. Local supercoil-stahilized DNA structures // Crit. Rev. Biochem. Mol. Biol. - 1991. - Vol. 26, N 2. - P. 151-226.
9. Panayotatos N., Fontaine A. A native cruciform DNA structure probed in bacteria by recombinant T7 endonuclease // J. Biol. Chem. - 1987. - Vol. 262, N 23. - P. 11364-11368.
10. Panyutin I., Klishko V., Lyamichev V. Kinetics of cruciform formation and stability of cruciform structure in superhelical DNA // J. Biomol. Struct. Dyn. - 1984. - Vol. 1, N 4. - P. 1311-1324. (Pubitemid 14056520)
11. pGEMEX-1 and pGEMEX-2 vectors //Techn. Bull., Promega. -2000. - N 253. - P. 1-13.
12. Santangelo T., Roberts J. Forward translocation is the natural pathway of RNA release at an intrinsic terminator // Mol. Cell. - 2004. - Vol. 14, N 1. - P. 117-126. (Pubitemid 38469914)
13. Sherman L. A., Getter M. L. Studies of the mechanism of enzymatic DNA elongation by Escherichia coli DNA polymerase II // J. Mol. Biol. - 1976. - Vol. 103. - P. 61-76.
14. Voineagu I., Narayanan V., Lobachev K., Mirkin S. Replication Stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins // Proc. Natl. Acad. Sci. USA. - 2008. - Vol. 105, N 29. - P. 9936-9941.
15. Weaver D. T., DePamphilis M. L. Specific sequences in native DNA that arrest synthesis by DNA polymerase alpha // J. Biol. Chem. - 1982. - Vol. 257, N 4. - P. 2075-2086.