메뉴 건너뛰기




Volumn 9, Issue , 2009, Pages

Pathway analysis for intracellular Porphyromonas gingivalis using a strain ATCC 33277 specific database

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; AMINO ACID TRANSFER RNA LIGASE; ASPARAGINE; ASPARTIC ACID; PROTEOME;

EID: 70349761672     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-9-185     Document Type: Article
Times cited : (29)

References (36)
  • 1
    • 20644467264 scopus 로고    scopus 로고
    • Epidemiology and risk factors of periodontal diseases
    • v-vi. 10.1016/j.cden.2005.03.003. 15978239
    • Epidemiology and risk factors of periodontal diseases. JM Albandar, Dent Clin North Am 2005 49 517 532 v-vi 10.1016/j.cden.2005.03.003 15978239
    • (2005) Dent Clin North Am , vol.49 , pp. 517-532
    • Albandar, J.M.1
  • 2
    • 0035754001 scopus 로고    scopus 로고
    • Relationship between periodontal disease and systemic health
    • 10.1034/j.1600-0757.2001.22250103.x. 11155180
    • Relationship between periodontal disease and systemic health. RI Garcia MM Henshaw EA Krall, Periodontol 2000 2001 25 21 36 10.1034/j.1600-0757.2001. 22250103.x 11155180
    • (2001) Periodontol 2000 , vol.25 , pp. 21-36
    • Garcia, R.I.1    Henshaw, M.M.2    Krall, E.A.3
  • 4
    • 0031766801 scopus 로고    scopus 로고
    • Life below the gum line: Pathogenic mechanisms of Porphyromonas gingivalis
    • 9841671
    • Life below the gum line: pathogenic mechanisms of Porphyromonas gingivalis. RJ Lamont HF Jenkinson, Microbiol Mol Biol Rev 1998 62 1244 1263 9841671
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 1244-1263
    • Lamont, R.J.1    Jenkinson, H.F.2
  • 5
    • 0030054346 scopus 로고    scopus 로고
    • Porphyromonas gingivalis FDC381 multiplies and persists within human oral epithelial cells in vitro
    • 8550223
    • Porphyromonas gingivalis FDC381 multiplies and persists within human oral epithelial cells in vitro. PN Madianos PN Papapanou U Nannmark G Dahlen J Sandros, Infect Immun 1996 64 660 664 8550223
    • (1996) Infect Immun , vol.64 , pp. 660-664
    • Madianos, P.N.1    Papapanou, P.N.2    Nannmark, U.3    Dahlen, G.4    Sandros, J.5
  • 6
    • 34247523365 scopus 로고    scopus 로고
    • Identification of intracellular oral species within human crevicular epithelial cells from subjects with chronic periodontitis by fluorescence in situ hybridization
    • 10.1111/j.1600-0765.2006.00938.x. 17451543
    • Identification of intracellular oral species within human crevicular epithelial cells from subjects with chronic periodontitis by fluorescence in situ hybridization. AV Colombo CM da Silva A Haffajee AP Colombo, J Periodontal Res 2007 42 236 243 10.1111/j.1600-0765.2006.00938.x 17451543
    • (2007) J Periodontal Res , vol.42 , pp. 236-243
    • Colombo, A.V.1    Da Silva, C.M.2    Haffajee, A.3    Colombo, A.P.4
  • 7
    • 0035081315 scopus 로고    scopus 로고
    • Intracellular Actinobacillusactinomycetemcomitans and Porphyromonas gingivalis in buccal epithelial cells collected from human subjects
    • 10.1128/IAI.69.4.2700-2707.2001. 11254637
    • Intracellular Actinobacillusactinomycetemcomitans and Porphyromonas gingivalis in buccal epithelial cells collected from human subjects. JD Rudney R Chen GJ Sedgewick, Infect Immun 2001 69 2700 2707 10.1128/IAI.69.4.2700-2707. 2001 11254637
    • (2001) Infect Immun , vol.69 , pp. 2700-2707
    • Rudney, J.D.1    Chen, R.2    Sedgewick, G.J.3
  • 8
    • 29644435936 scopus 로고    scopus 로고
    • Intercellular spreading of Porphyromonas gingivalis infection in primary gingival epithelial cells
    • 10.1128/IAI.74.1.703-710.2006. 16369027
    • Intercellular spreading of Porphyromonas gingivalis infection in primary gingival epithelial cells. O Yilmaz P Verbeke RJ Lamont DM Ojcius, Infect Immun 2006 74 703 710 10.1128/IAI.74.1.703-710.2006 16369027
    • (2006) Infect Immun , vol.74 , pp. 703-710
    • Yilmaz, O.1    Verbeke, P.2    Lamont, R.J.3    Ojcius, D.M.4
  • 9
    • 37049009528 scopus 로고    scopus 로고
    • Quantitative proteomics of intracellular Porphyromonas gingivalis
    • 10.1002/pmic.200700543. 17979175
    • Quantitative proteomics of intracellular Porphyromonas gingivalis. Q Xia T Wang F Taub Y Park CA Capestany RJ Lamont M Hackett, Proteomics 2007 7 4323 4337 10.1002/pmic.200700543 17979175
    • (2007) Proteomics , vol.7 , pp. 4323-4337
    • Xia, Q.1    Wang, T.2    Taub, F.3    Park, Y.4    Capestany, C.A.5    Lamont, R.J.6    Hackett, M.7
  • 11
    • 56149117939 scopus 로고    scopus 로고
    • Determination of the Genome Sequence of Porphyromonas gingivalis Strain ATCC 33277 and Genomic Comparison with Strain W83 Revealed Extensive Genome Rearrangements in P. gingivalis
    • 10.1093/dnares/dsn013. 18524787
    • Determination of the Genome Sequence of Porphyromonas gingivalis Strain ATCC 33277 and Genomic Comparison with Strain W83 Revealed Extensive Genome Rearrangements in P. gingivalis. M Naito H Hirakawa A Yamashita N Ohara M Shoji H Yukitake K Nakayama H Toh F Yoshimura S Kuhara M Hattori T Hayashi K Nakayama, DNA Res 2008 15 215 225 10.1093/dnares/dsn013 18524787
    • (2008) DNA Res , vol.15 , pp. 215-225
    • Naito, M.1    Hirakawa, H.2    Yamashita, A.3    Ohara, N.4    Shoji, M.5    Yukitake, H.6    Nakayama, K.7    Toh, H.8    Yoshimura, F.9    Kuhara, S.10    Hattori, M.11    Hayashi, T.12    Nakayama, K.13
  • 12
    • 55849114881 scopus 로고    scopus 로고
    • Science, marketing and wishful thinking in quantitative proteomics
    • 10.1002/pmic.200800358. 18937255
    • Science, marketing and wishful thinking in quantitative proteomics. M Hackett, Proteomics 2008 8 4618 4623 10.1002/pmic.200800358 18937255
    • (2008) Proteomics , vol.8 , pp. 4618-4623
    • Hackett, M.1
  • 13
    • 0033873462 scopus 로고    scopus 로고
    • Metabolic pathways for cytotoxic end product formation from glutamate- and aspartate-containing peptides by Porpyromonas gingivalis
    • 10.1128/JB.182.17.4704-4710.2000. 10940008
    • Metabolic pathways for cytotoxic end product formation from glutamate- and aspartate-containing peptides by Porpyromonas gingivalis. N Takahashi T Sato T Yamada, J Bacteriol 2000 182 4704 4710 10.1128/JB.182.17.4704-4710.2000 10940008
    • (2000) J Bacteriol , vol.182 , pp. 4704-4710
    • Takahashi, N.1    Sato, T.2    Yamada, T.3
  • 14
    • 34548462446 scopus 로고    scopus 로고
    • Protein abundance ratios for global studies of prokaryotes
    • 10.1002/pmic.200700267. 17639608
    • Protein abundance ratios for global studies of prokaryotes. Q Xia EL Hendrickson T Wang RJ Lamont JA Leigh M Hackett, Proteomics 2007 7 2904 2919 10.1002/pmic.200700267 17639608
    • (2007) Proteomics , vol.7 , pp. 2904-2919
    • Xia, Q.1    Hendrickson, E.L.2    Wang, T.3    Lamont, R.J.4    Leigh, J.A.5    Hackett, M.6
  • 15
    • 33750620682 scopus 로고    scopus 로고
    • Differential quantitative proteomics of Porphyromonas gingivalis by linear ion trap mass spectrometry: Non-label methods comparison, q-values and LOWESS curve fitting
    • 10.1016/j.ijms.2006.08.004
    • Differential quantitative proteomics of Porphyromonas gingivalis by linear ion trap mass spectrometry: Non-label methods comparison, q-values and LOWESS curve fitting. Q Xia T Wang Y Park RJ Lamont M Hackett, Int J Mass Spec 2007 259 105 116 10.1016/j.ijms.2006.08.004
    • (2007) Int J Mass Spec , vol.259 , pp. 105-116
    • Xia, Q.1    Wang, T.2    Park, Y.3    Lamont, R.J.4    Hackett, M.5
  • 16
    • 0036369795 scopus 로고    scopus 로고
    • In or out: The invasiveness of oral bacteria
    • 10.1034/j.1600-0757.2002.03006.x. 12236896
    • In or out: the invasiveness of oral bacteria. RJ Lamont O Yilmaz, Periodontol 2000 2002 30 61 69 10.1034/j.1600-0757.2002.03006.x 12236896
    • (2002) Periodontol 2000 , vol.30 , pp. 61-69
    • Lamont, R.J.1    Yilmaz, O.2
  • 18
    • 58149235290 scopus 로고    scopus 로고
    • Tools for interpreting large-scale protein profiling in microbiology
    • 10.1177/154405910808701113. 18946006
    • Tools for interpreting large-scale protein profiling in microbiology. EL Hendrickson RJ Lamont M Hackett, J Dent Res 2008 87 1004 1015 10.1177/154405910808701113 18946006
    • (2008) J Dent Res , vol.87 , pp. 1004-1015
    • Hendrickson, E.L.1    Lamont, R.J.2    Hackett, M.3
  • 19
    • 0030834273 scopus 로고    scopus 로고
    • Short-chain carboxylic-acid-stimulated, PMN-mediated gingival inflammation
    • 10.1177/10454411970080030301. 9260044
    • Short-chain carboxylic-acid-stimulated, PMN-mediated gingival inflammation. R Niederman J Zhang S Kashket, Crit Rev Oral Biol Med 1997 8 269 290 10.1177/10454411970080030301 9260044
    • (1997) Crit Rev Oral Biol Med , vol.8 , pp. 269-290
    • Niederman, R.1    Zhang, J.2    Kashket, S.3
  • 20
    • 58149505597 scopus 로고    scopus 로고
    • Metabolic network model of a human oral pathogen
    • 10.1128/JB.01123-08
    • Metabolic network model of a human oral pathogen. V Mazumdar ES Snitkin S Amar D Segrè J Bacterio 2009 191 74 90 10.1128/JB.01123-08
    • (2009) J Bacterio , vol.191 , pp. 74-90
    • Mazumdar, V.1    Snitkin, E.S.2    Amar, S.3    Segrè, D.4
  • 21
    • 38149113293 scopus 로고    scopus 로고
    • Short-Chain Fatty Acid Modulation of Apoptosis in the Kato III Human Gastric Carcinoma Cell Lines
    • 17611404
    • Short-Chain Fatty Acid Modulation of Apoptosis in the Kato III Human Gastric Carcinoma Cell Lines. GM Matthews GS Howarth RN Butler, Cancer Biol Ther 2007 6 1051 1057 17611404
    • (2007) Cancer Biol Ther , vol.6 , pp. 1051-1057
    • Matthews, G.M.1    Howarth, G.S.2    Butler, R.N.3
  • 23
    • 42549084285 scopus 로고    scopus 로고
    • Application of 16O/18O reverse proteolytic labeling to determine the effect of biofilm culture on the cell envelope proteome of Porphyromonas gingivalis W50
    • 10.1002/pmic.200700557. 18409167
    • Application of 16O/18O reverse proteolytic labeling to determine the effect of biofilm culture on the cell envelope proteome of Porphyromonas gingivalis W50. C Ang PD Veith SG Dashper EC Reynolds, Proteomics 2008 8 1645 1660 10.1002/pmic.200700557 18409167
    • (2008) Proteomics , vol.8 , pp. 1645-1660
    • Ang, C.1    Veith, P.D.2    Dashper, S.G.3    Reynolds, E.C.4
  • 24
    • 0033694722 scopus 로고    scopus 로고
    • Dental plaque formation
    • 10.1016/S1286-4579(00)01316-2. 11113379
    • Dental plaque formation. B Rosan RJ Lamont, Microbes Infect 2000 2 1599 1607 10.1016/S1286-4579(00)01316-2 11113379
    • (2000) Microbes Infect , vol.2 , pp. 1599-1607
    • Rosan, B.1    Lamont, R.J.2
  • 25
    • 0034276988 scopus 로고    scopus 로고
    • Comparison of the microbiota of supra- and subgingival plaque in health and periodontitis
    • 10.1034/j.1600-051x.2000.027009648.x. 10983598
    • Comparison of the microbiota of supra- and subgingival plaque in health and periodontitis. LA Ximenez-Fyvie AD Haffajee SS Socransky, J Clin Periodontol 2000 27 648 657 10.1034/j.1600-051x.2000.027009648.x 10983598
    • (2000) J Clin Periodontol , vol.27 , pp. 648-657
    • Ximenez-Fyvie, L.A.1    Haffajee, A.D.2    Socransky, S.S.3
  • 26
    • 0033145150 scopus 로고    scopus 로고
    • Ecological considerations in the treatment of Actinobacillus actinomycetemcomitans and Porphyromonas gingivalis periodontal infections
    • 10.1111/j.1600-0757.1999.tb00165.x. 10522230
    • Ecological considerations in the treatment of Actinobacillus actinomycetemcomitans and Porphyromonas gingivalis periodontal infections. SS Socransky AD Haffajee LA Ximenez-Fyvie M Feres D Mager, Periodontol 2000 1999 20 341 362 10.1111/j.1600-0757.1999.tb00165.x 10522230
    • (1999) Periodontol 2000 , vol.20 , pp. 341-362
    • Socransky, S.S.1    Haffajee, A.D.2    Ximenez-Fyvie, L.A.3    Feres, M.4    Mager, D.5
  • 28
    • 0021155247 scopus 로고
    • Regulation of the synthesis of ribosomes and ribosomal components
    • 10.1146/annurev.bi.53.070184.000451. 6206783
    • Regulation of the synthesis of ribosomes and ribosomal components. M Nomura R Gourse G Gaughman, Annu Rev Biochem 1984 53 75 117 10.1146/annurev.bi. 53.070184.000451 6206783
    • (1984) Annu Rev Biochem , vol.53 , pp. 75-117
    • Nomura, M.1    Gourse, R.2    Gaughman, G.3
  • 29
    • 40449095396 scopus 로고    scopus 로고
    • Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate
    • 10.1128/JB.01805-07. 18203827
    • Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate. EL Hendrickson Yuchen Liu G Rosas-Snadoval I Porat D Söll WB Whitman JA Leigh, J Bacteriol 2008 190 2198 2205 10.1128/JB.01805-07 18203827
    • (2008) J Bacteriol , vol.190 , pp. 2198-2205
    • Hendrickson, E.L.1    Liu, Y.2    Rosas-Snadoval, G.3    Porat, I.4    Söll, D.5    Whitman, W.B.6    Leigh, J.A.7
  • 30
    • 3843110041 scopus 로고    scopus 로고
    • Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis
    • 10.1128/JB.186.16.5473-5479.2004. 15292149
    • Comparative whole-genome analysis of virulent and avirulent strains of Porphyromonas gingivalis. T Chen Y Hosogi K Nishikawa K Abbey RD Fleischmann J Walling MJ Duncan, J Bacteriol 2004 186 5473 5479 10.1128/JB.186.16.5473-5479. 2004 15292149
    • (2004) J Bacteriol , vol.186 , pp. 5473-5479
    • Chen, T.1    Hosogi, Y.2    Nishikawa, K.3    Abbey, K.4    Fleischmann, R.D.5    Walling, J.6    Duncan, M.J.7
  • 31
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • DOI 10.1038/85686
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology. MP Washburn D Wolters JR Yates 3rd, Nat Biotechnol 2001 19 242 247 10.1038/85686 11231557 (Pubitemid 32220565)
    • (2001) Nature Biotechnology , vol.19 , Issue.3 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates, J.R.3
  • 32
    • 0036535357 scopus 로고    scopus 로고
    • Analysis of quantitative proteomic data generated via multidimensional protein identification technology
    • 10.1021/ac015704l. 12043600
    • Analysis of quantitative proteomic data generated via multidimensional protein identification technology. MP Washburn R Ulaszek C Deciu DM Schieltz R 3rd Yates, Anal Chem 2002 74 1650 1657 10.1021/ac015704l 12043600
    • (2002) Anal Chem , vol.74 , pp. 1650-1657
    • Washburn, M.P.1    Ulaszek, R.2    Deciu, C.3    Schieltz, D.M.4
  • 33
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
    • 10.1016/1044-0305(94)80016-2
    • An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database. JK Eng AL McCormack JR Yates 3rd, J Am Soc Mass Spectrum 1994 5 976 989 10.1016/1044-0305(94)80016-2
    • (1994) J Am Soc Mass Spectrum , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2
  • 34
    • 0036393898 scopus 로고    scopus 로고
    • DTASelect and Contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
    • 10.1021/pr015504q. 12643522
    • DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. DL Tabb WH McDonald JR Yates 3rd, J Proteome Res 2002 1 21 26 10.1021/pr015504q 12643522
    • (2002) J Proteome Res , vol.1 , pp. 21-26
    • Tabb, D.L.1    McDonald, W.H.2
  • 35
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: The yeast proteome
    • 10.1021/pr025556v. 12643542
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J Peng JE Elias CC Thoreen LJ Licklider SP Gygi, J Proteome Res 2003 2 43 50 10.1021/pr025556v 12643542
    • (2003) J Proteome Res , vol.2 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 36
    • 0742305695 scopus 로고    scopus 로고
    • Intensity-based protein identification by machine learning from a library of tandem mass spectra
    • 10.1038/nbt930. 14730315
    • Intensity-based protein identification by machine learning from a library of tandem mass spectra. JE Elias FD Gibbons OD King FP Roth SP Gygi, Nat Biotechnol 2004 22 214 219 10.1038/nbt930 14730315
    • (2004) Nat Biotechnol , vol.22 , pp. 214-219
    • Elias, J.E.1    Gibbons, F.D.2    King, O.D.3    Roth, F.P.4    Gygi, S.P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.