Development of a generic real-time PCR assay for simultaneous detection of proviral DNA of simian Betaretrovirus serotypes 1, 2, 3, 4 and 5 and secondary uniplex assays for specific serotype identification

Journal of Virological Methods

Volumn 162, Issue 1-2, 2009, Pages 148-154

  White, Jessica A ^a   Todd, Patricia A ^a   Rosenthal, Ann N ^a   Yee, JoAnn L ^a   Grant, Richard ^b   Lerche, Nicholas W ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Shin Nippon Biomedical Laboratories   (United States)

Author keywords

PCR; Simian betaretrovirus; SPF; SRV

Indexed keywords

ONCOSTATIN M; VIRUS DNA;

ARTICLE; ASSAY; CONFOUNDING VARIABLE; CONTROLLED STUDY; GENE AMPLIFICATION; GENUS; IMMUNE DEFICIENCY; MACACA; MONKEY; MULTIPLEX POLYMERASE CHAIN REACTION; NATURAL HOST; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROVIRUS; REAL TIME POLYMERASE CHAIN REACTION; RETROVIRUS; RETROVIRUS INFECTION; SERODIAGNOSIS; SEROTYPE;

ANIMALS; BETARETROVIRUS; DNA PRIMERS; DNA, VIRAL; HUMANS; MACACA; MONKEY DISEASES; POLYMERASE CHAIN REACTION; PROVIRUSES; RETROVIRIDAE INFECTIONS; SEROTYPING; SPECIES SPECIFICITY; TUMOR VIRUS INFECTIONS;

ANIMALIA; BETARETROVIRUS; MACACA; SIMIAE; SIMIAN RETROVIRUS 6; TYPE D RETROVIRUSES;

EID: 70349732871     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2009.07.030     Document Type: Article

References (35)

1. Anderson D.E., and Torres J.V. Simian retrovirus receptor and neutralization mechanism by antibodies to the envelope glycoprotein. Viral Immunol. 12 (1999) 47-56
2. Biosystems A. Guide to performing relative quantitation of gene expression using real-time quantitative PCR. Appl. Biosyst. 2009 (2008)
3. Bruce A.G., Bakke A.M., Thouless M.E., and Rose T.M. Development of a real-time QPCR assay for the detection of RV2 lineage-specific rhadinoviruses in macaques and baboons. Virol. J. 2 (2005) 2
4. Bryant M.L., Gardner M.B., Marx P.A., Maul D.H., Lerche N.W., Osborn K.G., Lowenstine L.J., Bodgen A., Arthur L.O., and Hunter E. Immunodeficiency in rhesus monkeys associated with the original Mason-Pfizer monkey virus. J. Natl. Cancer Inst. 77 (1986) 957-965
5. Chopra H.C., and Mason M.M. A new virus in a spontaneous mammary tumor of a rhesus monkey. Cancer Res. 30 (1970) 2081-2086
6. Chung H.K., Unangst T., Treece J., Weiss D., and Markham P. Development of real-time PCR assays for quantitation of simian betaretrovirus serotype-1, -2, -3, and -5 viral DNA in Asian monkeys. J. Virol. Methods 152 (2008) 91-97
7. Hara M., Kikuchi T., Sata T., Nakajima N., Ami Y., Sato Y., Tanaka K., Narita T., Ono F., Akari H., Terao K., and Mukai R. Detection of SRV/D shedding in body fluids of cynomolgus macaques and comparison of partial gp70 sequences in SRV/D-T isolates. Virus Genes 35 (2007) 281-288
8. Hara M., Sata T., Kikuchi T., Nakajima N., Uda A., Fujimoto K., Baba T., and Mukai R. Isolation and characterization of a new simian retrovirus type D subtype from monkeys at the Tsukuba Primate Center, Japan. Microbes Infect. 7 (2005) 126-131
9. Jensen E.M., Zelljadt I., Chopra H.C., and Mason M.M. Isolation and propagation of a virus from a spontaneous mammary carcinoma of a rhesus monkey. Cancer Res. 30 (1970) 2388-2393
10. Khan I.H., Mendoza S., Yee J., Deane M., Venkateswaran K., Zhou S.S., Barry P.A., Lerche N.W., and Luciw P.A. Simultaneous detection of antibodies to six nonhuman-primate viruses by multiplex microbead immunoassay. Clin. Vaccine Immunol. 13 (2006) 45-52
11. Landis J.R., and Koch G.G. An application of hierarchical kappa-type statistics in the assessment of majority agreement among multiple observers. Biometrics 33 (1977) 363-374
12. Lerche N.W. Epidemiology and control of type D retrovirus infection in captive macaques. In: Matano T.R., Ishida S., and Goodman M. (Eds). Topics in Primatology vol. 3 (1992), University of Tokyo Press, Tokyo 439-448
13. Lerche N.W. Common Viral Infections of Laboratory Primates. In: Wolfe-Coote S. (Ed). The Laboratory Primate (2005), Elsevier Academic Press, Amsterdam; Boston p11
14. Lerche N.W., Cotterman R.F., Dobson M.D., Yee J.L., Rosenthal A.N., and Heneine W.M. Screening for simian type-D retrovirus infection in macaques, using nested polymerase chain reaction. Lab. Anim. Sci. 47 (1997) 263-268
15. Lerche N.W., Marx P.A., Osborn K.G., Maul D.H., Lowenstine L.J., Bleviss M.L., Moody P., Henrickson R.V., and Gardner M.B. Natural history of endemic type D retrovirus infection and acquired immune deficiency syndrome in group-housed rhesus monkeys. J. Natl. Cancer Inst. 79 (1987) 847-854
16. Lerche N.W., Osborn K.G., Marx P.A., Prahalada S., Maul D.H., Lowenstine L.J., Munn R.J., Bryant M.L., Henrickson R.V., Arthur L.O., et al. Inapparent carriers of simian acquired immune deficiency syndrome type D retrovirus and disease transmission with saliva. J. Natl. Cancer Inst. 77 (1986) 489-496
17. Lerche N.W., and Osborn K.G. Simian retrovirus infections: potential confounding variables in primate toxicology studies. Toxicol. Pathol. 31 Suppl. (2003) 103-110
18. Lerche N.W., Yee J.L., and Jennings M.B. Establishing specific retrovirus-free breeding colonies of macaques: an approach to primary screening and surveillance. Lab. Anim. Sci. 44 (1994) 217-221
19. Li B., Axthelm M.K., and Machida C.A. Simian retrovirus serogroup 5: partial gag-prt sequence and viral RNA distribution in an infected rhesus macaque. Virus Genes 21 (2000) 241-248
20. Liska V., Lerche N.W., and Ruprecht R.M. Simultaneous detection of simian retrovirus type D serotypes 1,2, and 3 by polymerase chain reaction. AIDS Res. Hum. Retroviruses 13 (1997) 433-437
21. Lowenstine L.J., Pedersen N.C., Higgins J., Pallis K.C., Uyeda A., Marx P., Lerche N.W., Munn R.J., and Gardner M.B. Seroepidemiologic survey of captive Old-World primates for antibodies to human and simian retroviruses, and isolation of a lentivirus from sooty mangabeys (Cercocebus atys). Int. J. Cancer 38 (1986) 563-574
22. Malik N., Kallestad J.C., Gunderson N.L., Austin S.D., Neubauer M.G., Ochs V., Marquardt H., Zarling J.M., Shoyab M., Wei C.M., et al. Molecular cloning, sequence analysis, and functional expression of a novel growth regulator, oncostatin M. Mol. Cell. Biol. 9 (1989) 2847-2853
23. Malley A., Werner L., Benjamini E., Leung C.Y., Torres J., Pangares N., Shiigi S., and Axthelm M. Characterization of T- and B-cell epitopes of a simian retrovirus (SRV-2) envelope protein. J. Med. Primatol. 20 (1991) 177-181
24. Marracci G.H., Kelley R.D., Pilcher K.Y., Crabtree L., Shiigi S.M., Avery N., Leo G., Webb M.C., Hallick L.M., Axthelm M.K., et al. Simian AIDS type D serogroup 2 retrovirus: isolation of an infectious molecular clone and sequence analyses of its envelope glycoprotein gene and 3′ long terminal repeat. J. Virol. 69 (1995) 2621-2628
25. Marx P.A., Bryant M.L., Osborn K.G., Maul D.H., Lerche N.W., Lowenstine L.J., Kluge J.D., Zaiss C.P., Henrickson R.V., Shiigi S.M., et al. Isolation of a new serotype of simian acquired immune deficiency syndrome type D retrovirus from Celebes black macaques (Macaca nigra) with immune deficiency and retroperitoneal fibromatosis. J. Virol. 56 (1985) 571-578
26. Marx P.A., Maul D.H., Osborn K.G., Lerche N.W., Moody P., Lowenstine L.J., Henrickson R.V., Arthur L.O., Gilden R.V., Gravell M., et al. Simian AIDS: isolation of a type D retrovirus and transmission of the disease. Science 223 (1984) 1083-1086
27. Maul D.H., Lerche N.W., Osborn K.G., Marx P.A., Zaiss C., Spinner A., Kluge J.D., MacKenzie M.R., Lowenstine L.J., Bryant M.L., et al. Pathogenesis of simian AIDS in rhesus macaques inoculated with the SRV-1 strain of type D retrovirus. Am. J. Vet. Res. 47 (1986) 863-868
28. Nandi J.S., Bhavalkar-Potdar V., Tikute S., and Raut C.G. A novel type D simian retrovirus naturally infecting the Indian Hanuman langur (Semnopithecus entellus). Virology 277 (2000) 6-13
29. Nandi J.S., Tikute S.A., Chhangani A.K., Potdar V.A., Tiwari-Mishra M., Ashtekar R.A., Kumari J., Walimbe A., and Mohnot S.M. Natural infection by simian retrovirus-6 (SRV-6) in Hanuman langurs (Semnopithecus entellus) from two different geographical regions of India. Virology 311 (2003) 192-201
30. Nandi J.S., Van Dooren S., Chhangani A.K., and Mohnot S.M. New simian beta retroviruses from rhesus monkeys (Macaca mulatta) and langurs (Semnopithecus entellus) from Rajasthan, India. Virus Genes 33 (2006) 107-116
31. Power M.D., Marx P.A., Bryant M.L., Gardner M.B., Barr P.J., and Luciw P.A. Nucleotide sequence of SRV-1, a type D simian acquired immune deficiency syndrome retrovirus. Science 231 (1986) 1567-1572
32. Sonigo P., Barker C., Hunter E., and Wain-Hobson S. Nucleotide sequence of Mason-Pfizer monkey virus: an immunosuppressive D-type retrovirus. Cell 45 (1986) 375-385
33. Torres J.V., Werner L.L., Malley A., and Benjamin E. Neutralization epitope in the envelope glycoprotein of simian retrovirus-1 (SRV-1) and identification of the virus receptor. J. Med. Primatol. 20 (1991) 218-221
34. Torres J.V., Werner L.L., Malley A., and Benjamini E. The induction of neutralizing antibodies by synthetic peptides of the envelope protein of type D simian retrovirus-1 (SRV-1). Mol. Immunol. 28 (1991) 907-913
35. Werner L.L., Torres J.V., Leung C.Y., Kwang H.S., Malley A., and Benjamini E. Immunobiological properties of a recombinant simian retrovirus-1 envelope protein and a neutralizing monoclonal antibody directed against it. Mol. Immunol. 28 (1991) 819-826